Basic Information | |
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IMG/M Taxon OID | 3300026841 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0095510 | Gp0072035 | Ga0207490 |
Sample Name | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A3a-10 (SPAdes) |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 39726773 |
Sequencing Scaffolds | 37 |
Novel Protein Genes | 39 |
Associated Families | 39 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces noursei | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 1 |
Not Available | 14 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium | 1 |
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 3 |
All Organisms → cellular organisms → Bacteria | 5 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis | 1 |
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria | 2 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → unclassified Beijerinckia → Beijerinckia sp. L45 | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1 |
All Organisms → cellular organisms → Archaea | 3 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
Type | Environmental |
Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | terrestrial biome → agricultural field → agricultural soil |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
Location Information | ||||||||
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Location | Wisconsin, United States | |||||||
Coordinates | Lat. (o) | 43.3 | Long. (o) | -89.38 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000268 | Metagenome / Metatranscriptome | 1411 | Y |
F000288 | Metagenome / Metatranscriptome | 1369 | Y |
F000569 | Metagenome / Metatranscriptome | 1018 | Y |
F001033 | Metagenome / Metatranscriptome | 799 | Y |
F001436 | Metagenome / Metatranscriptome | 695 | Y |
F003059 | Metagenome / Metatranscriptome | 510 | Y |
F005316 | Metagenome / Metatranscriptome | 405 | Y |
F006477 | Metagenome / Metatranscriptome | 372 | Y |
F007674 | Metagenome / Metatranscriptome | 347 | Y |
F011518 | Metagenome / Metatranscriptome | 290 | Y |
F015418 | Metagenome / Metatranscriptome | 255 | Y |
F015492 | Metagenome / Metatranscriptome | 254 | Y |
F016544 | Metagenome / Metatranscriptome | 246 | N |
F017759 | Metagenome | 239 | N |
F018256 | Metagenome / Metatranscriptome | 236 | Y |
F019387 | Metagenome / Metatranscriptome | 230 | Y |
F019867 | Metagenome | 227 | Y |
F020731 | Metagenome / Metatranscriptome | 222 | Y |
F022731 | Metagenome / Metatranscriptome | 213 | Y |
F025757 | Metagenome | 200 | N |
F028610 | Metagenome / Metatranscriptome | 191 | Y |
F032670 | Metagenome / Metatranscriptome | 179 | N |
F034221 | Metagenome | 175 | Y |
F034995 | Metagenome | 173 | N |
F035133 | Metagenome | 173 | Y |
F049092 | Metagenome | 147 | N |
F050525 | Metagenome / Metatranscriptome | 145 | N |
F057709 | Metagenome | 136 | Y |
F059295 | Metagenome | 134 | Y |
F064703 | Metagenome / Metatranscriptome | 128 | Y |
F065229 | Metagenome / Metatranscriptome | 128 | Y |
F067960 | Metagenome | 125 | Y |
F071512 | Metagenome / Metatranscriptome | 122 | Y |
F075211 | Metagenome | 119 | Y |
F078898 | Metagenome | 116 | N |
F079346 | Metagenome / Metatranscriptome | 116 | Y |
F090038 | Metagenome | 108 | N |
F097297 | Metagenome / Metatranscriptome | 104 | Y |
F100589 | Metagenome / Metatranscriptome | 102 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0207490_1000198 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces noursei | 1744 | Open in IMG/M |
Ga0207490_1000368 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 1484 | Open in IMG/M |
Ga0207490_1000594 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 1298 | Open in IMG/M |
Ga0207490_1000640 | Not Available | 1271 | Open in IMG/M |
Ga0207490_1001139 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium | 1054 | Open in IMG/M |
Ga0207490_1001199 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 1036 | Open in IMG/M |
Ga0207490_1001561 | Not Available | 954 | Open in IMG/M |
Ga0207490_1001572 | Not Available | 951 | Open in IMG/M |
Ga0207490_1001622 | All Organisms → cellular organisms → Bacteria | 941 | Open in IMG/M |
Ga0207490_1001831 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 908 | Open in IMG/M |
Ga0207490_1001868 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis | 903 | Open in IMG/M |
Ga0207490_1001983 | Not Available | 883 | Open in IMG/M |
Ga0207490_1002049 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 874 | Open in IMG/M |
Ga0207490_1002060 | Not Available | 872 | Open in IMG/M |
Ga0207490_1002197 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 853 | Open in IMG/M |
Ga0207490_1002378 | All Organisms → cellular organisms → Bacteria | 830 | Open in IMG/M |
Ga0207490_1002635 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → unclassified Beijerinckia → Beijerinckia sp. L45 | 799 | Open in IMG/M |
Ga0207490_1002837 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 780 | Open in IMG/M |
Ga0207490_1003086 | Not Available | 760 | Open in IMG/M |
Ga0207490_1003460 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 734 | Open in IMG/M |
Ga0207490_1003715 | Not Available | 717 | Open in IMG/M |
Ga0207490_1003895 | All Organisms → cellular organisms → Bacteria | 705 | Open in IMG/M |
Ga0207490_1004289 | Not Available | 682 | Open in IMG/M |
Ga0207490_1004492 | Not Available | 672 | Open in IMG/M |
Ga0207490_1004843 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 655 | Open in IMG/M |
Ga0207490_1005109 | Not Available | 643 | Open in IMG/M |
Ga0207490_1006085 | Not Available | 608 | Open in IMG/M |
Ga0207490_1006111 | All Organisms → cellular organisms → Archaea | 607 | Open in IMG/M |
Ga0207490_1006254 | All Organisms → cellular organisms → Bacteria | 602 | Open in IMG/M |
Ga0207490_1006499 | All Organisms → cellular organisms → Archaea | 593 | Open in IMG/M |
Ga0207490_1007131 | Not Available | 576 | Open in IMG/M |
Ga0207490_1007991 | Not Available | 553 | Open in IMG/M |
Ga0207490_1008275 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 546 | Open in IMG/M |
Ga0207490_1008502 | Not Available | 541 | Open in IMG/M |
Ga0207490_1008547 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium | 540 | Open in IMG/M |
Ga0207490_1009348 | All Organisms → cellular organisms → Bacteria | 524 | Open in IMG/M |
Ga0207490_1010695 | All Organisms → cellular organisms → Archaea | 500 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0207490_1000198 | Ga0207490_10001983 | F020731 | MPVLAFFAVAGLALIALLFVADAALEKDGSPVIVTSQRSGLPESSHRPDKIPVLTMAPAPDPDMTSKIVRDAQPKPVAQDPMKIHPAARAARAEAMPQTPGVTQPMNDRPPMNYHYRRSQEFDRFSIKGL |
Ga0207490_1000368 | Ga0207490_10003682 | F025757 | VRVGLALSATRAPMSYSTSISLFWLEMAVLIGCVVLSIRMRSRAAMWVALAIVAHCAVWLAIHDEEILIRLVASALVYLGLLKFSPNAARVWLCAGGALAGAFLLGTMALSLLMSFPGRWSVFGLSMGATLLFLTSGLLIGFWVVYRWTDPTQLGDTQPRQEA |
Ga0207490_1000594 | Ga0207490_10005941 | F065229 | FNGFGLSAIILSDAIPAMLLIRFAISVFALMLLGLAVSLSVAQSEDETNAAQAATFIHQ |
Ga0207490_1000640 | Ga0207490_10006403 | F057709 | MSEFDLKVALIIFVTKFIDPFAALPALVAGYFCRTWWQVVIAAAAVGIFV |
Ga0207490_1001139 | Ga0207490_10011391 | F050525 | MSRVRNWHFTDIGATAANETLMPGVVALGVILMRGFAGLLAYLAGVSAIFGIGIVGLMALHSPTGRTPSSPPVAAAEPLAKPAKRPLDDKKTAHRNQTHKKVHVTRKQHEAPSIDAGRNAYGYAEEPRRIDPNRFLFFGR |
Ga0207490_1001199 | Ga0207490_10011991 | F001033 | MKFVSRTKSMAVPHQILGTSTNEKRELLMCGHSLIARLTIAVFVFQMLGVTSVVHAEGPDSTAGTSSADTRKLVIGPSSASVALWKASLIVSPLTHRDGNYVGDYQLKVRPYFFKSEKGSLLLAASDDAVRKLQAGTAINFTGQAVTHKDGRTHIVLGRATPSSRDRGSVTFSIVTDDARIVFNTSYHFPAPRP |
Ga0207490_1001561 | Ga0207490_10015612 | F059295 | GPLAVERLYLVAAMGAVVYAAFFAALIAMPIYGGGAYDKNGYQPFNAPVPIFAKKWDANITAFSIQLLILVAGLLTVSGAFAG |
Ga0207490_1001572 | Ga0207490_10015723 | F034995 | LALIAGIFLIGFPAWMMKEMSVPLPEYRKGGYADYVLLAYELLAVYGSVLLGIAVHVGRAKWSGQSLFPFGLFKAGMWGVLVAASAYFVAGGVYGLISYGAFDKVIGGTLWGLLAIFWGVFGALVSAGLALLFYAWRGSAGYRPPGSAGLGTPRS |
Ga0207490_1001622 | Ga0207490_10016221 | F071512 | YHHVEASLLGRIDEAKESLANTLALQPDFSTDHVAYNTVFAHASDRSRFLRGLQKAGLRN |
Ga0207490_1001831 | Ga0207490_10018312 | F011518 | MILTAAIVVQIGLAGYGAFYAANKLDAEGATIDDDTFMDGFGLHAGFGYLVILLGLIFMIIGLAAGIGKWRLGRHGLLFLLLFIQLWLAWIGFELPFPIGFLHPINAMLILALSSWISWDEWQRRKAGTGTTAPPPEPAAA |
Ga0207490_1001868 | Ga0207490_10018681 | F003059 | AVYRGTLVCDKLPFSAGKGREAIEVTIAGGTVRYSHVVRLRDAAEPVSEQGKGSLNGQDIELQGSWKAGNRQYEAKYSGAFVRRHADLKGTQTWTDGGKSFTRACTGTIKRPFRVFLPGEKK |
Ga0207490_1001983 | Ga0207490_10019832 | F001436 | MKRDKDIVALIELLKLAAEQWPHANCEISQTDLFHRNQSLLEMWPEACRRAGVGGRDFPSGVIKLWKQGA |
Ga0207490_1002049 | Ga0207490_10020491 | F079346 | SASPSSSAPAAVPLATQRTPGSTGVPPSGQGTPISHIVGVGGMVGSMSTFGATARWWHDKHLGVQVGFTRDAMSSDTAAGRVTSMQIEPGVVYALFDRVPGYVWIRPYVGSALSFRHQTWKDTAPVPMEPDSDNGVGYRVFGGSEFTFASVTQFGLSAEVGYRHVPTAFTGFEPDRMSVAVIGHWYFK |
Ga0207490_1002060 | Ga0207490_10020601 | F097297 | MLVTERMRSLGDHAKSSRQPPLKERKLTKSDASAATQDVINEKEFKKGAAHESAAVVIVDNPAPQTVVHENRNAAVAEITPDEEAAVLATVAAVLAKIDPQPPTADDNVTRPEPVREDAELSAAKRAIIHEWESWSALHSDELGDPKVAEYFFRHLQTKKPQLLNFGF |
Ga0207490_1002197 | Ga0207490_10021971 | F017759 | VVVGLLNSECPQQYGAYESKYGAHGQHIELQGKVHGSASLVDARRLARNQRRPKVPAIGPVLFAGEIAYRICAMDNRLIVRLKKSEEPKILTVQNSRGTEFFMANLRQIPSILRGNDSAPSPRKKIYPSIKRMMTSVARRICRTAKNARTAATSHP |
Ga0207490_1002378 | Ga0207490_10023781 | F034221 | LAAVRDHVVREWENERRQRARNDAYTKMRAEYQVSIEAELTTERR |
Ga0207490_1002635 | Ga0207490_10026352 | F028610 | WIQEQMVKAGKLKAPLDLKVVTAPEYRERALKVLGH |
Ga0207490_1002837 | Ga0207490_10028372 | F078898 | MDLSKRQLLQDALARAEAHHAFIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE |
Ga0207490_1003086 | Ga0207490_10030861 | F019867 | MHVIPLSAATILAFASPLHAQGIEVFGGYSVNADYVQNRPAILVADQKVSPFFSHGSGPTGFEASFKHDVRNGLGIKVDVSGYSDTFPPGPAAYCQPDSSTAGIMCGTGLTFHATGRALYVTAGPEWKIRRD |
Ga0207490_1003460 | Ga0207490_10034602 | F022731 | MGTDAIDRVKKELLRAFDNTRAELDRIEILAAGLAAFNAPIPGYEPMFRHLPQLNRNAHELAADEPRA |
Ga0207490_1003715 | Ga0207490_10037152 | F000569 | MDLHIKKVWLPGAASCLLFFGFYWVLIWLPFDKNRFQFLAIPYLVLPFVGALAAYWSRRMKGSVLERIVSALFPVFAFVALFAVRIVYGLFFEGKPYTLPHFLAGFSVTLVFIVVGGLLLVLGAWPFCRPHLREQLP |
Ga0207490_1003895 | Ga0207490_10038952 | F019387 | KVAPVCILIFLVASLLTGCTSVTNDTMSDPSSSQSGAAVPGEKMSDDQRYAPGPMGSGNVKW |
Ga0207490_1004289 | Ga0207490_10042891 | F016544 | MAKSSFLACLALLAISVLPTRATAAAGEYHWARGILRASSASAITLQLKDGSLTLRVDQATEVISPTPIDASTGRGLIPNLGSLVQVHFSESRGERVAALVVAEGAHLPLTPVKDLEQSVLGEAKRFKSRTVVVEIDGHTRDVALNDDTQLVDRNGSVRAVGTKAIKAALVAGTKVLVTWKPFWVPDGSGAVTGY |
Ga0207490_1004492 | Ga0207490_10044921 | F018256 | QMPSFEGLLEWLTGPTWKFAALVLGSVGASYLILAHRLWWAYAVIMLAQVVYFFSAGSAELAVMRASVLFAYGVITLPPMRPLAPLATDIAVMVICFCYIMIVLCLYSAAWVASGGRVPQGAYGRRPTPLEPLRPSRLLDTFLPGHRSQDVTLWEGAVFALSSLLFVAASMAPFYGIRRVQNAFQSTFATQVQQVCPAQPPEAMIACWAQFYPWSRVAIDLGA |
Ga0207490_1004843 | Ga0207490_10048431 | F007674 | LARLEKERGDAAFADELGQLQKLIGKRCKRLRRDALELGRRFYAEPSKAFAKRISIFAGKRT |
Ga0207490_1005109 | Ga0207490_10051092 | F064703 | IVAVLGVFAVKSVIGPGKMSLSEAVKYPVPTYDLHVAQPVDMKNFPSDVIPLP |
Ga0207490_1006085 | Ga0207490_10060851 | F015492 | MAMRHQIWVFAAAMLALICAGLQSEARAQVFDFGQIEEFESLGSGTQKGGSPPKTIIDDGARHTVLFTILESNTEAKIHWKSKDGSQTTIMRGQGLRAFQTVGEFRIEATGDDSRSFRYGYVLFRLKSEKSAQEDKI |
Ga0207490_1006111 | Ga0207490_10061111 | F032670 | TLPLPNLFMKCGICKEEIIKEKRREHLRYHKLDDTLVEWIIETDDDLISSYEKH |
Ga0207490_1006254 | Ga0207490_10062541 | F075211 | RRMKRTLSAVAAAVLVSMMALMFLGGLLKKAARIVDDLRDPPPRPPL |
Ga0207490_1006499 | Ga0207490_10064991 | F090038 | AFLSKKLSQELLNLDIDEGIRIESNKNIKCKMYINKRTSGYFVLEIEDTNSTNIKEFRFYRDIKPIHRLIDKIFGKQYSITIY |
Ga0207490_1006999 | Ga0207490_10069991 | F000288 | MALARVVTFDGVSSDRVAQMQRDMQDEEQPEGLNATEIVVLHDPDAERSLVILFFGNEDDYRAGDEILNAMPAGDTPGRRSDV |
Ga0207490_1007131 | Ga0207490_10071311 | F035133 | MAKVFTHWTSRTAIDARIAEERRNPVESWNELTAAREDNDLSFDKVEYEIKPAKWPWLVHII |
Ga0207490_1007991 | Ga0207490_10079911 | F015418 | MSIVSRRTFTKGLLASTLVPPGHSAIGQPNDPASIAIIDTPNNAAKVASKLAAQNVKVVVRFFARKPQPGLREKVMASDGNMIDGVREPTILIR |
Ga0207490_1008275 | Ga0207490_10082752 | F006477 | MTVLNLLIVIVASGLAFVAYKHPNAYRVMFIFAVPVLVMGGLIVLAIKIGDLNGSIKSIYHELPNIRKYALSDQLPYQIRRLYEVGQFLKVFLIYYISGFAYLVFLLVLGGFLDLARDRHLSLRDMERK |
Ga0207490_1008502 | Ga0207490_10085021 | F049092 | MKFIEPVFETGGDLWRTLSNVPDADARALNEKLARQSAELNRRLTEILELHNVHQRQANELQDAHDEIDRLSQTVSALQEAVTQYQAGAAAAEDEIVLLESEKAALQAQLDGAFEESKTLADRVLAAEAAAKRREENIASSLKQID |
Ga0207490_1008547 | Ga0207490_10085471 | F005316 | MPTIYISDSGDDKNDGLSPQTAIYSLKRAKKLHGGRNDYSWHFGPRAWKRIQKELSEKKKKSD |
Ga0207490_1009348 | Ga0207490_10093481 | F000268 | MLMRVVAVMLLLSAGIAAEAMSYSFVSKASGRLGGPIRFEFYRDSTTRPKTDIKSFTVSMRTADDRWKAMWSILSGRGLTQPIEYGVTPPGFTTMIQPQKLIPGRVYAGFATDGHGGTSGVTFGFDKNGRMTFPDSFDQ |
Ga0207490_1009670 | Ga0207490_10096702 | F067960 | PVEDGTCGGCHQAQYQQTLESKHFVGRQMRVLNDDRAARVALRREGLTAATPRGRRFVGDSSAAALGGRLCAACHYDEHRLGLGSVHTVDFCSGCHTGRADHYPDVTPNVPNRCIECHVRAGETVAGQRVNRHQFAVPGAEGAGR |
Ga0207490_1010695 | Ga0207490_10106951 | F100589 | WKLGEISPVEARKYLVNRKQDECRVSYDHNNVEYILRVMALMFMSWSVTNLKRKTQNGHCQNIDHPHGDTNPRLCKEGTIFHQDLYNECVKTFKDLLIHSDAQHH |
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