NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026841

3300026841: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A3a-10 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300026841 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0095510 | Gp0072035 | Ga0207490
Sample NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A3a-10 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size39726773
Sequencing Scaffolds37
Novel Protein Genes39
Associated Families39

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces noursei1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1
Not Available14
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium3
All Organisms → cellular organisms → Bacteria5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → unclassified Beijerinckia → Beijerinckia sp. L451
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1
All Organisms → cellular organisms → Archaea3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biomeagricultural fieldagricultural soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationWisconsin, United States
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000268Metagenome / Metatranscriptome1411Y
F000288Metagenome / Metatranscriptome1369Y
F000569Metagenome / Metatranscriptome1018Y
F001033Metagenome / Metatranscriptome799Y
F001436Metagenome / Metatranscriptome695Y
F003059Metagenome / Metatranscriptome510Y
F005316Metagenome / Metatranscriptome405Y
F006477Metagenome / Metatranscriptome372Y
F007674Metagenome / Metatranscriptome347Y
F011518Metagenome / Metatranscriptome290Y
F015418Metagenome / Metatranscriptome255Y
F015492Metagenome / Metatranscriptome254Y
F016544Metagenome / Metatranscriptome246N
F017759Metagenome239N
F018256Metagenome / Metatranscriptome236Y
F019387Metagenome / Metatranscriptome230Y
F019867Metagenome227Y
F020731Metagenome / Metatranscriptome222Y
F022731Metagenome / Metatranscriptome213Y
F025757Metagenome200N
F028610Metagenome / Metatranscriptome191Y
F032670Metagenome / Metatranscriptome179N
F034221Metagenome175Y
F034995Metagenome173N
F035133Metagenome173Y
F049092Metagenome147N
F050525Metagenome / Metatranscriptome145N
F057709Metagenome136Y
F059295Metagenome134Y
F064703Metagenome / Metatranscriptome128Y
F065229Metagenome / Metatranscriptome128Y
F067960Metagenome125Y
F071512Metagenome / Metatranscriptome122Y
F075211Metagenome119Y
F078898Metagenome116N
F079346Metagenome / Metatranscriptome116Y
F090038Metagenome108N
F097297Metagenome / Metatranscriptome104Y
F100589Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207490_1000198All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces noursei1744Open in IMG/M
Ga0207490_1000368All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1484Open in IMG/M
Ga0207490_1000594All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1298Open in IMG/M
Ga0207490_1000640Not Available1271Open in IMG/M
Ga0207490_1001139All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1054Open in IMG/M
Ga0207490_1001199All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1036Open in IMG/M
Ga0207490_1001561Not Available954Open in IMG/M
Ga0207490_1001572Not Available951Open in IMG/M
Ga0207490_1001622All Organisms → cellular organisms → Bacteria941Open in IMG/M
Ga0207490_1001831All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium908Open in IMG/M
Ga0207490_1001868All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis903Open in IMG/M
Ga0207490_1001983Not Available883Open in IMG/M
Ga0207490_1002049All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium874Open in IMG/M
Ga0207490_1002060Not Available872Open in IMG/M
Ga0207490_1002197All Organisms → cellular organisms → Bacteria → Proteobacteria853Open in IMG/M
Ga0207490_1002378All Organisms → cellular organisms → Bacteria830Open in IMG/M
Ga0207490_1002635All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → unclassified Beijerinckia → Beijerinckia sp. L45799Open in IMG/M
Ga0207490_1002837All Organisms → cellular organisms → Bacteria → Proteobacteria780Open in IMG/M
Ga0207490_1003086Not Available760Open in IMG/M
Ga0207490_1003460All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria734Open in IMG/M
Ga0207490_1003715Not Available717Open in IMG/M
Ga0207490_1003895All Organisms → cellular organisms → Bacteria705Open in IMG/M
Ga0207490_1004289Not Available682Open in IMG/M
Ga0207490_1004492Not Available672Open in IMG/M
Ga0207490_1004843All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium655Open in IMG/M
Ga0207490_1005109Not Available643Open in IMG/M
Ga0207490_1006085Not Available608Open in IMG/M
Ga0207490_1006111All Organisms → cellular organisms → Archaea607Open in IMG/M
Ga0207490_1006254All Organisms → cellular organisms → Bacteria602Open in IMG/M
Ga0207490_1006499All Organisms → cellular organisms → Archaea593Open in IMG/M
Ga0207490_1007131Not Available576Open in IMG/M
Ga0207490_1007991Not Available553Open in IMG/M
Ga0207490_1008275All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium546Open in IMG/M
Ga0207490_1008502Not Available541Open in IMG/M
Ga0207490_1008547All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium540Open in IMG/M
Ga0207490_1009348All Organisms → cellular organisms → Bacteria524Open in IMG/M
Ga0207490_1010695All Organisms → cellular organisms → Archaea500Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207490_1000198Ga0207490_10001983F020731MPVLAFFAVAGLALIALLFVADAALEKDGSPVIVTSQRSGLPESSHRPDKIPVLTMAPAPDPDMTSKIVRDAQPKPVAQDPMKIHPAARAARAEAMPQTPGVTQPMNDRPPMNYHYRRSQEFDRFSIKGL
Ga0207490_1000368Ga0207490_10003682F025757VRVGLALSATRAPMSYSTSISLFWLEMAVLIGCVVLSIRMRSRAAMWVALAIVAHCAVWLAIHDEEILIRLVASALVYLGLLKFSPNAARVWLCAGGALAGAFLLGTMALSLLMSFPGRWSVFGLSMGATLLFLTSGLLIGFWVVYRWTDPTQLGDTQPRQEA
Ga0207490_1000594Ga0207490_10005941F065229FNGFGLSAIILSDAIPAMLLIRFAISVFALMLLGLAVSLSVAQSEDETNAAQAATFIHQ
Ga0207490_1000640Ga0207490_10006403F057709MSEFDLKVALIIFVTKFIDPFAALPALVAGYFCRTWWQVVIAAAAVGIFV
Ga0207490_1001139Ga0207490_10011391F050525MSRVRNWHFTDIGATAANETLMPGVVALGVILMRGFAGLLAYLAGVSAIFGIGIVGLMALHSPTGRTPSSPPVAAAEPLAKPAKRPLDDKKTAHRNQTHKKVHVTRKQHEAPSIDAGRNAYGYAEEPRRIDPNRFLFFGR
Ga0207490_1001199Ga0207490_10011991F001033MKFVSRTKSMAVPHQILGTSTNEKRELLMCGHSLIARLTIAVFVFQMLGVTSVVHAEGPDSTAGTSSADTRKLVIGPSSASVALWKASLIVSPLTHRDGNYVGDYQLKVRPYFFKSEKGSLLLAASDDAVRKLQAGTAINFTGQAVTHKDGRTHIVLGRATPSSRDRGSVTFSIVTDDARIVFNTSYHFPAPRP
Ga0207490_1001561Ga0207490_10015612F059295GPLAVERLYLVAAMGAVVYAAFFAALIAMPIYGGGAYDKNGYQPFNAPVPIFAKKWDANITAFSIQLLILVAGLLTVSGAFAG
Ga0207490_1001572Ga0207490_10015723F034995LALIAGIFLIGFPAWMMKEMSVPLPEYRKGGYADYVLLAYELLAVYGSVLLGIAVHVGRAKWSGQSLFPFGLFKAGMWGVLVAASAYFVAGGVYGLISYGAFDKVIGGTLWGLLAIFWGVFGALVSAGLALLFYAWRGSAGYRPPGSAGLGTPRS
Ga0207490_1001622Ga0207490_10016221F071512YHHVEASLLGRIDEAKESLANTLALQPDFSTDHVAYNTVFAHASDRSRFLRGLQKAGLRN
Ga0207490_1001831Ga0207490_10018312F011518MILTAAIVVQIGLAGYGAFYAANKLDAEGATIDDDTFMDGFGLHAGFGYLVILLGLIFMIIGLAAGIGKWRLGRHGLLFLLLFIQLWLAWIGFELPFPIGFLHPINAMLILALSSWISWDEWQRRKAGTGTTAPPPEPAAA
Ga0207490_1001868Ga0207490_10018681F003059AVYRGTLVCDKLPFSAGKGREAIEVTIAGGTVRYSHVVRLRDAAEPVSEQGKGSLNGQDIELQGSWKAGNRQYEAKYSGAFVRRHADLKGTQTWTDGGKSFTRACTGTIKRPFRVFLPGEKK
Ga0207490_1001983Ga0207490_10019832F001436MKRDKDIVALIELLKLAAEQWPHANCEISQTDLFHRNQSLLEMWPEACRRAGVGGRDFPSGVIKLWKQGA
Ga0207490_1002049Ga0207490_10020491F079346SASPSSSAPAAVPLATQRTPGSTGVPPSGQGTPISHIVGVGGMVGSMSTFGATARWWHDKHLGVQVGFTRDAMSSDTAAGRVTSMQIEPGVVYALFDRVPGYVWIRPYVGSALSFRHQTWKDTAPVPMEPDSDNGVGYRVFGGSEFTFASVTQFGLSAEVGYRHVPTAFTGFEPDRMSVAVIGHWYFK
Ga0207490_1002060Ga0207490_10020601F097297MLVTERMRSLGDHAKSSRQPPLKERKLTKSDASAATQDVINEKEFKKGAAHESAAVVIVDNPAPQTVVHENRNAAVAEITPDEEAAVLATVAAVLAKIDPQPPTADDNVTRPEPVREDAELSAAKRAIIHEWESWSALHSDELGDPKVAEYFFRHLQTKKPQLLNFGF
Ga0207490_1002197Ga0207490_10021971F017759VVVGLLNSECPQQYGAYESKYGAHGQHIELQGKVHGSASLVDARRLARNQRRPKVPAIGPVLFAGEIAYRICAMDNRLIVRLKKSEEPKILTVQNSRGTEFFMANLRQIPSILRGNDSAPSPRKKIYPSIKRMMTSVARRICRTAKNARTAATSHP
Ga0207490_1002378Ga0207490_10023781F034221LAAVRDHVVREWENERRQRARNDAYTKMRAEYQVSIEAELTTERR
Ga0207490_1002635Ga0207490_10026352F028610WIQEQMVKAGKLKAPLDLKVVTAPEYRERALKVLGH
Ga0207490_1002837Ga0207490_10028372F078898MDLSKRQLLQDALARAEAHHAFIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE
Ga0207490_1003086Ga0207490_10030861F019867MHVIPLSAATILAFASPLHAQGIEVFGGYSVNADYVQNRPAILVADQKVSPFFSHGSGPTGFEASFKHDVRNGLGIKVDVSGYSDTFPPGPAAYCQPDSSTAGIMCGTGLTFHATGRALYVTAGPEWKIRRD
Ga0207490_1003460Ga0207490_10034602F022731MGTDAIDRVKKELLRAFDNTRAELDRIEILAAGLAAFNAPIPGYEPMFRHLPQLNRNAHELAADEPRA
Ga0207490_1003715Ga0207490_10037152F000569MDLHIKKVWLPGAASCLLFFGFYWVLIWLPFDKNRFQFLAIPYLVLPFVGALAAYWSRRMKGSVLERIVSALFPVFAFVALFAVRIVYGLFFEGKPYTLPHFLAGFSVTLVFIVVGGLLLVLGAWPFCRPHLREQLP
Ga0207490_1003895Ga0207490_10038952F019387KVAPVCILIFLVASLLTGCTSVTNDTMSDPSSSQSGAAVPGEKMSDDQRYAPGPMGSGNVKW
Ga0207490_1004289Ga0207490_10042891F016544MAKSSFLACLALLAISVLPTRATAAAGEYHWARGILRASSASAITLQLKDGSLTLRVDQATEVISPTPIDASTGRGLIPNLGSLVQVHFSESRGERVAALVVAEGAHLPLTPVKDLEQSVLGEAKRFKSRTVVVEIDGHTRDVALNDDTQLVDRNGSVRAVGTKAIKAALVAGTKVLVTWKPFWVPDGSGAVTGY
Ga0207490_1004492Ga0207490_10044921F018256QMPSFEGLLEWLTGPTWKFAALVLGSVGASYLILAHRLWWAYAVIMLAQVVYFFSAGSAELAVMRASVLFAYGVITLPPMRPLAPLATDIAVMVICFCYIMIVLCLYSAAWVASGGRVPQGAYGRRPTPLEPLRPSRLLDTFLPGHRSQDVTLWEGAVFALSSLLFVAASMAPFYGIRRVQNAFQSTFATQVQQVCPAQPPEAMIACWAQFYPWSRVAIDLGA
Ga0207490_1004843Ga0207490_10048431F007674LARLEKERGDAAFADELGQLQKLIGKRCKRLRRDALELGRRFYAEPSKAFAKRISIFAGKRT
Ga0207490_1005109Ga0207490_10051092F064703IVAVLGVFAVKSVIGPGKMSLSEAVKYPVPTYDLHVAQPVDMKNFPSDVIPLP
Ga0207490_1006085Ga0207490_10060851F015492MAMRHQIWVFAAAMLALICAGLQSEARAQVFDFGQIEEFESLGSGTQKGGSPPKTIIDDGARHTVLFTILESNTEAKIHWKSKDGSQTTIMRGQGLRAFQTVGEFRIEATGDDSRSFRYGYVLFRLKSEKSAQEDKI
Ga0207490_1006111Ga0207490_10061111F032670TLPLPNLFMKCGICKEEIIKEKRREHLRYHKLDDTLVEWIIETDDDLISSYEKH
Ga0207490_1006254Ga0207490_10062541F075211RRMKRTLSAVAAAVLVSMMALMFLGGLLKKAARIVDDLRDPPPRPPL
Ga0207490_1006499Ga0207490_10064991F090038AFLSKKLSQELLNLDIDEGIRIESNKNIKCKMYINKRTSGYFVLEIEDTNSTNIKEFRFYRDIKPIHRLIDKIFGKQYSITIY
Ga0207490_1006999Ga0207490_10069991F000288MALARVVTFDGVSSDRVAQMQRDMQDEEQPEGLNATEIVVLHDPDAERSLVILFFGNEDDYRAGDEILNAMPAGDTPGRRSDV
Ga0207490_1007131Ga0207490_10071311F035133MAKVFTHWTSRTAIDARIAEERRNPVESWNELTAAREDNDLSFDKVEYEIKPAKWPWLVHII
Ga0207490_1007991Ga0207490_10079911F015418MSIVSRRTFTKGLLASTLVPPGHSAIGQPNDPASIAIIDTPNNAAKVASKLAAQNVKVVVRFFARKPQPGLREKVMASDGNMIDGVREPTILIR
Ga0207490_1008275Ga0207490_10082752F006477MTVLNLLIVIVASGLAFVAYKHPNAYRVMFIFAVPVLVMGGLIVLAIKIGDLNGSIKSIYHELPNIRKYALSDQLPYQIRRLYEVGQFLKVFLIYYISGFAYLVFLLVLGGFLDLARDRHLSLRDMERK
Ga0207490_1008502Ga0207490_10085021F049092MKFIEPVFETGGDLWRTLSNVPDADARALNEKLARQSAELNRRLTEILELHNVHQRQANELQDAHDEIDRLSQTVSALQEAVTQYQAGAAAAEDEIVLLESEKAALQAQLDGAFEESKTLADRVLAAEAAAKRREENIASSLKQID
Ga0207490_1008547Ga0207490_10085471F005316MPTIYISDSGDDKNDGLSPQTAIYSLKRAKKLHGGRNDYSWHFGPRAWKRIQKELSEKKKKSD
Ga0207490_1009348Ga0207490_10093481F000268MLMRVVAVMLLLSAGIAAEAMSYSFVSKASGRLGGPIRFEFYRDSTTRPKTDIKSFTVSMRTADDRWKAMWSILSGRGLTQPIEYGVTPPGFTTMIQPQKLIPGRVYAGFATDGHGGTSGVTFGFDKNGRMTFPDSFDQ
Ga0207490_1009670Ga0207490_10096702F067960PVEDGTCGGCHQAQYQQTLESKHFVGRQMRVLNDDRAARVALRREGLTAATPRGRRFVGDSSAAALGGRLCAACHYDEHRLGLGSVHTVDFCSGCHTGRADHYPDVTPNVPNRCIECHVRAGETVAGQRVNRHQFAVPGAEGAGR
Ga0207490_1010695Ga0207490_10106951F100589WKLGEISPVEARKYLVNRKQDECRVSYDHNNVEYILRVMALMFMSWSVTNLKRKTQNGHCQNIDHPHGDTNPRLCKEGTIFHQDLYNECVKTFKDLLIHSDAQHH

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