NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026836

3300026836: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A2-10 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300026836 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0095510 | Gp0072033 | Ga0207612
Sample NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A2-10 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size34037093
Sequencing Scaffolds40
Novel Protein Genes41
Associated Families40

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2
All Organisms → cellular organisms → Bacteria → Proteobacteria1
Not Available22
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_2_20CM_55_101
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biomeagricultural fieldagricultural soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationWisconsin, United States
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000569Metagenome / Metatranscriptome1018Y
F001033Metagenome / Metatranscriptome799Y
F001436Metagenome / Metatranscriptome695Y
F002315Metagenome / Metatranscriptome572Y
F002839Metagenome / Metatranscriptome527Y
F003433Metagenome / Metatranscriptome487Y
F011852Metagenome / Metatranscriptome286Y
F012929Metagenome / Metatranscriptome276Y
F013250Metagenome / Metatranscriptome273Y
F014858Metagenome259Y
F015418Metagenome / Metatranscriptome255Y
F015492Metagenome / Metatranscriptome254Y
F015863Metagenome / Metatranscriptome251Y
F016544Metagenome / Metatranscriptome246N
F017145Metagenome / Metatranscriptome242Y
F017759Metagenome239N
F018416Metagenome / Metatranscriptome235Y
F019867Metagenome227Y
F022677Metagenome / Metatranscriptome213N
F022685Metagenome / Metatranscriptome213N
F022740Metagenome / Metatranscriptome213Y
F024545Metagenome / Metatranscriptome205Y
F028554Metagenome / Metatranscriptome191N
F030581Metagenome / Metatranscriptome185N
F031088Metagenome / Metatranscriptome183Y
F031115Metagenome / Metatranscriptome183Y
F038225Metagenome / Metatranscriptome166Y
F042363Metagenome / Metatranscriptome158Y
F055839Metagenome / Metatranscriptome138Y
F057488Metagenome136N
F057709Metagenome136Y
F059381Metagenome / Metatranscriptome134N
F065246Metagenome / Metatranscriptome128Y
F068000Metagenome / Metatranscriptome125N
F071100Metagenome / Metatranscriptome122Y
F085779Metagenome / Metatranscriptome111N
F086236Metagenome / Metatranscriptome111Y
F096096Metagenome105Y
F098176Metagenome104N
F099776Metagenome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207612_1000270All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1882Open in IMG/M
Ga0207612_1000386All Organisms → cellular organisms → Bacteria → Proteobacteria1656Open in IMG/M
Ga0207612_1000633Not Available1395Open in IMG/M
Ga0207612_1000805All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium1274Open in IMG/M
Ga0207612_1001065Not Available1109Open in IMG/M
Ga0207612_1001234All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis1045Open in IMG/M
Ga0207612_1001448All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales974Open in IMG/M
Ga0207612_1001507Not Available956Open in IMG/M
Ga0207612_1001649All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria918Open in IMG/M
Ga0207612_1001800Not Available878Open in IMG/M
Ga0207612_1001825Not Available873Open in IMG/M
Ga0207612_1001847Not Available869Open in IMG/M
Ga0207612_1001886Not Available861Open in IMG/M
Ga0207612_1002060All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium826Open in IMG/M
Ga0207612_1002063All Organisms → cellular organisms → Bacteria825Open in IMG/M
Ga0207612_1002100Not Available820Open in IMG/M
Ga0207612_1002220All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria798Open in IMG/M
Ga0207612_1002288Not Available788Open in IMG/M
Ga0207612_1002549Not Available750Open in IMG/M
Ga0207612_1002641All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera738Open in IMG/M
Ga0207612_1003027Not Available696Open in IMG/M
Ga0207612_1003108All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae688Open in IMG/M
Ga0207612_1003279All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_2_20CM_55_10672Open in IMG/M
Ga0207612_1003482All Organisms → cellular organisms → Bacteria655Open in IMG/M
Ga0207612_1003538Not Available651Open in IMG/M
Ga0207612_1003632All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium644Open in IMG/M
Ga0207612_1003947All Organisms → cellular organisms → Bacteria622Open in IMG/M
Ga0207612_1004125Not Available613Open in IMG/M
Ga0207612_1004728All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium583Open in IMG/M
Ga0207612_1005135Not Available564Open in IMG/M
Ga0207612_1005255All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium559Open in IMG/M
Ga0207612_1005410Not Available553Open in IMG/M
Ga0207612_1005514Not Available549Open in IMG/M
Ga0207612_1005573Not Available547Open in IMG/M
Ga0207612_1006014Not Available532Open in IMG/M
Ga0207612_1006324All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia522Open in IMG/M
Ga0207612_1006462Not Available519Open in IMG/M
Ga0207612_1006747Not Available510Open in IMG/M
Ga0207612_1006842Not Available508Open in IMG/M
Ga0207612_1007110Not Available502Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207612_1000270Ga0207612_10002702F012929VSRDRIIRFAAVLVGAAVLFGLEQQFGVKLYLAIPAAIAVYFATLIVLTLAFGSGNQTK
Ga0207612_1000386Ga0207612_10003864F011852MRMPLVSYFVVMGATLTLALIFISNRIEPLGSPVPTSQIVGIAKPFKPEPERSPYIITGSNFAAAYRPASARAAAEPKPTRRTASLQQQQPATDTEARRVPRWKQIAQNPIAALMSIH
Ga0207612_1000633Ga0207612_10006332F022740YTPADLLIMARALKRLGAENTVIFVDKAAGAGSRNVGFYHRRRAQILAARSNELGGLVSFISVGGQPVNTTRNGTIVAAFTFDDIVWTDIQQKTFAAATAQIRQIRPGSTPVLAATGTITPLADTEIRKLGWKIVQLKPDR
Ga0207612_1000805Ga0207612_10008052F015492MAMRHQIWVFAAAMLALICAGLQSEARAQVFDFGQIEEFESLGSGTQKGGSPPKTIIDDGARHTVLFTILESNTEAKIYWKSKDGSQTTIMRGQGLRAFQTIGEFRIEAAGDDSRSFRYGYVLFRLKSEKSAQEDKI
Ga0207612_1001065Ga0207612_10010651F057488RGMRALLLGTLLAIGLIPGATAQLAVGPVPIMSSINGIPITVSVTSWITVNSVGDETTVDARIFADLIDLQKKFSDVVDSFKRSARNCNRSADGQNPVVSFKSGSLWPRNDQLIMFVRGDIDIWSCSVGPPQSAIRWEKTKVSFLTLKLPVRRTWRNVKRNMDGTQPFHGTLLVSLAEKDGANVALRNTEPNLRLDGEPTFATNANLSLAKTDMNDKVSKTLRSAIDLTKLKDVLPKELQKFNMTVNSARFRDRGGHAIAEINLVGKASSTTTTSLLQQIDAGL
Ga0207612_1001234Ga0207612_10012342F065246VDRSRNQKIFDERCFAIRPTPVVQQSADAAGDRLGCKADNRVPKNANVRILAQSGAWSGVDVDEDGYADGQVRTADLTSDLATMPPWGSS
Ga0207612_1001448Ga0207612_10014481F031088MKLNVLAVALAASAIGAFSANAQVVIEERRDPAVVIEHDRPNTSVTVEKRDGFLGTEKKTITKETTGSGDCSSKTVHKEDITGSKTVQ
Ga0207612_1001507Ga0207612_10015071F024545RTKKPKVQIKRQKGVARLGYRIYIDGTYMGTGSTRASARDGAQRMLVIYAT
Ga0207612_1001649Ga0207612_10016491F002315MAMLTVAFAADKKTYRYNCKGGAFTVTAAVEASGRWSKAEPVVLQIDSEPPQTLIADPDVPDADSFTNKDYEFYALKTFITLTRKSHGVVVKTYNACRVE
Ga0207612_1001800Ga0207612_10018001F016544MAKSSFLACLALLAISVLPSCATAAAGEYHWARGILRASSASAITLQLKDGSLTLRVDQATEVISPTPIDASTGRGLIPNLGSLVQVHFSESRGERVAALVVAESAQLPLTPVKDLEQSVMGEAKRFKSRTVVVGIDGHTRDVSLNDDTQLVDRNGSVRAVGTKAIKAALVAGTKVLVTWKPFWVTDGSGAVTGYYRDAETIRMITVSPLDEKDALTVR
Ga0207612_1001825Ga0207612_10018252F057709MSEFDLKVALIIFVTKFIDPFAAVPALVAGYFCRTW
Ga0207612_1001847Ga0207612_10018471F022685PFRTERRMTLMKAILGLALGIALMSALQTVGVWSLQEHIKSQSNAGLPIGNTPVVGNFDADALKNGILPKYGPIDTREGQRLAIEGAARRIDLQNRAVQKYLPR
Ga0207612_1001847Ga0207612_10018472F015863TPRACLISLPMRRFIPLLILLGLIFGASYASALINRVMGPWSSTAIHQDGSLSHMQFGVDLPRPEWVPVYPGAWVVGGSKITSVEHPAGFHGLDLGTRASLDEVRRFYTEQLTAEGFEVSDLGLMGLNPPTAALLGIDGMLSAKRPSTDDTIDVQIRTPDGIIPSRLLQIHWRKISATPG
Ga0207612_1001886Ga0207612_10018862F055839KHLVLASALILAGSTAAKPSDINFGETRTRFQIQNELTAWERLHPWDVDWRHTTLWQHGRALRTEFAPPGCTITRLVTTRSGTRLEELFIC
Ga0207612_1002060Ga0207612_10020601F017145IYSNDWHPSGWSALRQEATATKPPVSVTEQYTGSIIIVPSRGEDCRQMMLDNRTGRMWDKGLVNCYEAVSRSEKEQRGGMSSLRINAIGKAFNRRDE
Ga0207612_1002063Ga0207612_10020632F000569MDLHIKKVWLPGAASCLLFFGFYWVLIWLPFDKNRFQFLAIPYLVLPFVGALAAYGSRRMKGSVLERILSALFPVFAFVALFAVRIVYGLFFEGKPYTLPHFLAGFFVTLVFIVVGGLLLVLGAWPFCRPRLREQL
Ga0207612_1002100Ga0207612_10021002F019867VHVTPFSAATILVFAIASPLHAQGIEVFGGYSVNADYVQNRPAIFVVDHKASPFFSHGSGPTGFEASFKHDVRNGLGIKVDVSGYSDTFPPGPAAYCQPDSSTAGIACGTGLTFQATGRALYVTAGPEWKIRRGKRFAPFAQTLVGIVYTRSTFMMNGSDVQYTNPFTGGVLLFTSAGFPPDRSI
Ga0207612_1002220Ga0207612_10022202F022677MYGLANIDFSNQFGVVISELPDEIDDQHQTPDAKQQTVLSLEMAVFGAA
Ga0207612_1002288Ga0207612_10022881F014858PVSQPQTGHSRLSLIGRHTGLLAVAIFGTLLSAKIWVPVAFFIVDTFPVNPALAGAALFIACVVFFLCIFGVGMRSRVIGLVSRVILLFLSVVAAIASMEAISFGLISVTVTASREGFVWVSIAIVLVACAALGLKTALDWPLSYWIVFPAVFATLIFATFGLSIFSLM
Ga0207612_1002549Ga0207612_10025491F015863MRRFIPLLILLGLVFGASYASALINRVMGPWSSTAIHQDGSLSHMQFGVDLPRPEWVPVYPGAWVVGGSKITSVEHPAGFHGLDLGTRASLDEVKRFYTEQLTAAGFEVSDLGLMGLNPMTAAYLGVDGMLSAKRHATDDAIDVQIR
Ga0207612_1002641Ga0207612_10026411F002839MEQRRFFEAKGEESGEWLVLDGKRHPPRVICKCVGWNAPKNAALIAAALQAYSAELYSKFPFDDSDQLDEQSVVKASAEAESAPATRGTKGKARAKHRG
Ga0207612_1003027Ga0207612_10030272F099776RLCLSTTYGLPQQFDVIIDGKRRSVRPVWMTYTEMGVMFAEASQKSADLVECERDIASLIELLKMAEEKWPSSESYEISETEMLCRDQALLDMWPEACRRIGFSKREFPIDVIKLWQKQMGWPN
Ga0207612_1003108Ga0207612_10031081F028554LKDQMRKAKQVRNRALSAGEGRRAIIVMAALTGLFFLAAFVTAGSLLSTDPRPMSSLSKVTQLPPTEGGEAASRVASIVVETDKKGRCEERRFDNRTGKMVSANYVNCDARLEPERDTTPSENINRERIRAILGAFKK
Ga0207612_1003279Ga0207612_10032791F086236RSECVRHHRPRTGGLSLRVEVRSRVPVHTPWQLSRNAMVSRHSRIAEIQLSHVCGTSETTERSSGMETIFGTQTTCAMEIIYETQTISEMEIIICGVTGKNMLPVTAQEIGIATGTATAIIGGMDTNAPSLMDRG
Ga0207612_1003482Ga0207612_10034823F042363SIFASNAFAVLRSPYPSKPSPPDHIITIIIIGQDKHDLVRTTHRESK
Ga0207612_1003538Ga0207612_10035381F015418MSIVSRRTFTKGLLASALVPGTSAFGQPNDPASIAIIDTPQNAAKVAAKLAAQNVKVVVRFFARKPQPGLREKVMASDGNMIDGVREPTILIRNGLS
Ga0207612_1003632Ga0207612_10036322F071100MKKTNVTVACCALIAPLAFCASAFAADSTKNVVRPAQPQRVMKTAKKMCYTFTTTSGIPMPCGRVGSIPTTASPMTIYRNATAK
Ga0207612_1003947Ga0207612_10039471F001436WGMKRDKDIVALIELLKLAAEQWPHANCEISQTDLFHRNQSLLEMWPEACRRAGVGGRDFPSGVIKLWKQGAGRVN
Ga0207612_1004125Ga0207612_10041251F098176QIHHEDENIALSTAAQLPPQCALVASYRNTSETLVPRGRKRNRMYLGLLRADLLENDGTIIAGDATAVRAAMNELNTALEGITDADPIFAPQGLAIVSPTAGECYEVNEVGCGEAVDTHRSRRQKEPENMIWQASS
Ga0207612_1004728Ga0207612_10047282F001033LMCRSSLILRLTVAAFVFLILGVTSVIHAERPDSTAGTSRAGTRKLFIDPSSTSVDLRGKASLIVSPLTHRDGNYVGDYQLKVRPYFFKSEKGSLLLAASDDAVRKLQAGTAINFTGQAVTHKDGRTHIVLGRATPSSRDRGSVTFSIVTDDARIVFNTSYHFPAPRP
Ga0207612_1005135Ga0207612_10051351F038225RNFKETTMKRFSLALLGTVGAFFILTPAQAADYRVVQYNDTKICQVVDMAGPFKPISSNYTVLTKKSIPTFDAAMKARADVSKKAKCTFL
Ga0207612_1005255Ga0207612_10052551F031115TEIRQRLAREDPDYDPVAVYAQYAWASGDEFLASMRFLVDFVNVLPTFTRTFSTRYGLPARLELRRFHPVDANRYFLFLRDSNIRALRNIFSGARFIGTAPIYVNEKVTWKAMNYPGPWVRETDGATADLGRTTSFDMAEETEDNVAALRRRIVRHDALGGGLEAARIVDGDGRLVLETDVVVVG
Ga0207612_1005410Ga0207612_10054101F017759MLSGAVIVHGCKPLLLFGVVVGLLNSECPQQYGAYESKYGAHGQHIELQGKVHGSASLVDALRLARNDPAPKAPVTRPAFPAGGIAYRTCAIDNRLIERLKKSEGPKILIVQNS
Ga0207612_1005514Ga0207612_10055141F013250MNTVAENNVLPPESYVVEIDGKIRSVYGIFIEALKAGMELKQKFPHSHIKVHNA
Ga0207612_1005573Ga0207612_10055732F018416RRHLALDNNGVVVSPTSSLAVKRCGLGAVIAAAYQLTHNADAAYQVGYQVLRPRYGSATLIHINDVRGHAAVLALFDEVLAAG
Ga0207612_1006014Ga0207612_10060141F059381MPGDPKRCREHAKRCWALASEITNPVLKESLLDAAQRWAVLAAELETIHYLLEEPEKKAG
Ga0207612_1006324Ga0207612_10063241F096096MKKLLTTMSIAAVSAVSCVAIAQQAPDAAEVDTSLRLEARLQPVIPVDASGQARLDIDAGTANDRFTAEVEIAKADFANLGITRGNGFRDEVVQLRVLRGGAQIFANRLQFSRNLVHDITFETDIRG
Ga0207612_1006462Ga0207612_10064621F030581MKTQRESRRTVGRFTKMVAKFLHIPDGAAVYVIWAAWIAVVIIIGIIVMLWR
Ga0207612_1006747Ga0207612_10067472F003433HYSFGAAGTRGVTIAKGKAGTLMSNPAGVIVRLSTTQKGVNVNATGGGVDMEIKR
Ga0207612_1006842Ga0207612_10068421F085779MKNSHCLLGTSGVAAAVLLYSLGAAVFAQDEPRRPLNPGLVPNTGQINTGAAPQPWSKSAEVDNIPAPAEAWAALVQPISRQPSAGGGATTTGTGGQQPPASGTINASSEPPPSGPIGSFGQTIPAKYSKRNDILDHLPTMAIPLPLTQEQRKQIYDAVMAEKSQ
Ga0207612_1007110Ga0207612_10071101F068000YDPRKSLESIASDWALLQISSDPKPETRPVSVAREVNLPFELPLMTAGYSKRTPHKMTGDQECRIVGRSSDEAVIFDNCHSPDGFSGGPILAVAPDGRSYLVLGIHVASQVWKGKSIAIAVSAASIWREIGPCVEEHKCNFQHVARARDPTAAEIFAGLPNLGLQKV

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