Basic Information | |
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IMG/M Taxon OID | 3300026811 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0095510 | Gp0072098 | Ga0207529 |
Sample Name | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A4w-12 (SPAdes) |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 26383494 |
Sequencing Scaffolds | 22 |
Novel Protein Genes | 23 |
Associated Families | 23 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Archaea | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 1 |
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 2 |
Not Available | 8 |
All Organisms → cellular organisms → Bacteria | 3 |
All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 2 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860 | 1 |
All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
Type | Environmental |
Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | terrestrial biome → agricultural field → agricultural soil |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
Location Information | ||||||||
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Location | Wisconsin, United States | |||||||
Coordinates | Lat. (o) | 43.3 | Long. (o) | -89.38 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000268 | Metagenome / Metatranscriptome | 1411 | Y |
F000569 | Metagenome / Metatranscriptome | 1018 | Y |
F001033 | Metagenome / Metatranscriptome | 799 | Y |
F002616 | Metagenome / Metatranscriptome | 543 | Y |
F009830 | Metagenome / Metatranscriptome | 312 | Y |
F014213 | Metagenome | 265 | Y |
F020078 | Metagenome / Metatranscriptome | 226 | Y |
F021340 | Metagenome | 219 | Y |
F023901 | Metagenome / Metatranscriptome | 208 | N |
F024545 | Metagenome / Metatranscriptome | 205 | Y |
F028554 | Metagenome / Metatranscriptome | 191 | N |
F033614 | Metagenome / Metatranscriptome | 177 | Y |
F038480 | Metagenome | 166 | Y |
F040398 | Metagenome / Metatranscriptome | 162 | Y |
F041068 | Metagenome | 160 | N |
F045189 | Metagenome | 153 | Y |
F052694 | Metagenome / Metatranscriptome | 142 | N |
F063998 | Metagenome / Metatranscriptome | 129 | Y |
F082749 | Metagenome / Metatranscriptome | 113 | Y |
F085323 | Metagenome | 111 | N |
F089000 | Metagenome | 109 | N |
F092372 | Metagenome / Metatranscriptome | 107 | N |
F097297 | Metagenome / Metatranscriptome | 104 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0207529_100048 | All Organisms → cellular organisms → Archaea | 1907 | Open in IMG/M |
Ga0207529_100483 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium | 1066 | Open in IMG/M |
Ga0207529_100602 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 1011 | Open in IMG/M |
Ga0207529_100840 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 913 | Open in IMG/M |
Ga0207529_101050 | Not Available | 859 | Open in IMG/M |
Ga0207529_101107 | All Organisms → cellular organisms → Bacteria | 845 | Open in IMG/M |
Ga0207529_101232 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 816 | Open in IMG/M |
Ga0207529_101334 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 795 | Open in IMG/M |
Ga0207529_101813 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae | 722 | Open in IMG/M |
Ga0207529_102032 | Not Available | 697 | Open in IMG/M |
Ga0207529_102186 | Not Available | 681 | Open in IMG/M |
Ga0207529_102503 | Not Available | 651 | Open in IMG/M |
Ga0207529_102916 | Not Available | 621 | Open in IMG/M |
Ga0207529_102974 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 617 | Open in IMG/M |
Ga0207529_103009 | Not Available | 614 | Open in IMG/M |
Ga0207529_103028 | All Organisms → cellular organisms → Bacteria | 613 | Open in IMG/M |
Ga0207529_104405 | All Organisms → cellular organisms → Bacteria | 541 | Open in IMG/M |
Ga0207529_104899 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860 | 521 | Open in IMG/M |
Ga0207529_105076 | All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium | 515 | Open in IMG/M |
Ga0207529_105115 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 513 | Open in IMG/M |
Ga0207529_105154 | Not Available | 512 | Open in IMG/M |
Ga0207529_105277 | Not Available | 507 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0207529_100047 | Ga0207529_1000471 | F082749 | FAANATGEGRLAPAFARRGGMDGESVDAAGKLGRKRLINHAMTLDAGLSLKGVRHDIDPVVSLPARPVPGMAFMLVRFINYFEALWRESLDQFFCDEIGGSHIARLGERGLPVNGHKQVLNASPAKAHNVRS |
Ga0207529_100048 | Ga0207529_1000482 | F023901 | MRSTHNEQGQTCEGGVPLDPKKFGGYEFAINTKGWDAKREPTHNCHDQHKSGLIPTNLENDKAVRLRQTVKDESGKVHQIGEIDYMDGNGFHKVMDIFDSSPNPWMVDRNLYETKSYFWIRNNGSGYITVMDVSLEILS |
Ga0207529_100483 | Ga0207529_1004832 | F097297 | AYGLAVRMADAIGDASAATQDVINEKEFKKGAAHESAAVVIVDNPAPQTVVHENRNAAVAEITPDEEAAVLATVAAVLAKIDPQPPTADDNVTRPEPVREDAELSAAKRAIIHEWESWSALHSDELGDPKVAEYFFRHLQANKPKLLIFSSQDKQGIVRSALGHLR |
Ga0207529_100602 | Ga0207529_1006022 | F040398 | YKSLVAGITDAAVVSNEFEAVMPSNIKVLAKGSSAVPNFLRLCVATSGKVLSERRDDLVKFVAAEMDAYKFALANRAETIKVSQEMTHAKPDDKRAEFITDEAIKDKQIDPTLSIPLDRLDWMQNLFLKAGVIKQTVPIESIVDKSVNADAAKIAGK |
Ga0207529_100840 | Ga0207529_1008402 | F001033 | MCGHFLITRLTIAVFVFLILGVASVIHAERPDSTAGTSNAGTRKLFIDPSSTSVALRGKASLIVSPLTHRDGNYVGDYQLKVRPYFFKSEKGSLLLAASDDAVRKLQTGTAISFTGKAVTHKDGRTHIVLGRATPSSGNRGGVTFSIITDDAKIVFNTSYHFGT |
Ga0207529_101050 | Ga0207529_1010503 | F024545 | CSAMQRTKKPKVQIKRQKGVARLGYRIYIDGTYMGTGSTRASARDGAQRMLVIYAT |
Ga0207529_101107 | Ga0207529_1011073 | F045189 | LGVGVVLPANVPALVLSDAWRTSAPMPIAPVPKHVLLSVFLV |
Ga0207529_101232 | Ga0207529_1012322 | F085323 | VPVWLQIIVVVVCATAMVIAADAEDHCGDTTAKCIVAIGKG |
Ga0207529_101334 | Ga0207529_1013342 | F009830 | PITSKGLIEMLDKRLEQEQARRVDERLARVVRIIVEQYDGDVKAFVDSIRYRTEVNRKAEAASDHGDEVPLRKCPSTTKIIGRISSAHYS |
Ga0207529_101813 | Ga0207529_1018132 | F028554 | AGEGRRAIIVMAALTGLFFLAAFVTAGSLLSTDPRPMSSLSKVTQLPPTEGGEAASRVASIVVETDKKGRCEERRFDNRTGKMVSANYVNCDARLEPERDTTPSENINRERIRAILGAFK |
Ga0207529_102032 | Ga0207529_1020321 | F089000 | MGEPTPATPASKYFAATVAMIAGAFVFAIGAGLLPIPGGPSNLHGPLWLLLCVGLAFFLAGLAILIQMLSHANDSGDLPA |
Ga0207529_102186 | Ga0207529_1021862 | F063998 | VEEDQTVVLTVVPGETEAEVLCGLLRANGIECGYRDTDAIDSPLEDFMTSGPREILVHEADLE |
Ga0207529_102503 | Ga0207529_1025031 | F002616 | TPRMQDTPMPNSFPNWTSRIVIAGRIAEYRRPENWNESTMPGDYHLPFGRVEAQAKAARWLWQSYII |
Ga0207529_102916 | Ga0207529_1029161 | F020078 | MHSATRFCWQSGVIALATIIFAFLVPGIALCKVVSLTSIASAIAITTLVAGFGLYLAGQLIEKRTPQSERVDHYLQASILVTAAGLLWGHVVLQTGPWRDRSIEPGVAFAIVAGCGVA |
Ga0207529_102974 | Ga0207529_1029742 | F014213 | RVDPQLTPHDHVVAAQAIIRGKRGVINAAMVWSRDGRGQTFATGNYTFLRMGRGVTYKLLDNVWRRLVG |
Ga0207529_103009 | Ga0207529_1030091 | F052694 | TVEPYYLVEHSFEERSMSKSSKFVSLTLVVATLIVGTSTAWSGPLAKGTNAHVVDDGTVSWTLPAGQCPAAPDGLTGSGERQRVTITKVNADGSTTIIINDVVRGTAWDATGTYKFVYENHSIDQVPAGGGVHQISMEDNFILNGNGSVGHLAVGFNWAWTYTDPNGPFDVLPLANLVERTTRGEPLLCDPI |
Ga0207529_103028 | Ga0207529_1030281 | F021340 | WHVAIVTLFFVIVLGASLFLGTVMVIGTFHGVDPSNELTANGRAGRIARTLRDGTLCHYMIFDNKTAQTVEDRIGRCDENKPKPKQERPATFTWGK |
Ga0207529_104405 | Ga0207529_1044051 | F000268 | MLMRVVAVMLLLSAGIAAEAMSYSFVCKASGRLGGPIRFEFYHDSTTRPKTDIESFTVSMRTADDRWKAMWSILSGRGLTQPIEYGVTPPGFTTMIQPQKLIPGRVYAGFATDGHGGSSGVTFGFDKNGRMTFPDSFDR |
Ga0207529_104899 | Ga0207529_1048991 | F092372 | MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIIGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTITGRFDRTRESTRVATTGAARSDGGSDVFVH |
Ga0207529_105076 | Ga0207529_1050761 | F033614 | AGFYRTWNANSTALKLMNGQGISYWLEFNPSTFRVGDGSARPSLHPLSFAWTWEWSAVDPDIIYFLNGNQLAKYNKVTTLVTNLGGPPNGDTVTMHVAVVGQDSWVCSTAGAGTQNSYTKIYCLNPNNPSQTKFIDVLNKTINGIVQSDPKWPTSAAGQTIGIHSMYGSAA |
Ga0207529_105115 | Ga0207529_1051152 | F041068 | MTTAATGDEPGENATMVGQEMSGWLRGVEGFEGMLMLYRPGTTIGLTFWEGREVAERALPLRMQFLERIASVADVQIDRVEAFDVVVARPVARQD |
Ga0207529_105154 | Ga0207529_1051541 | F038480 | PNMEGACRVVADRGSSQMKLGRKSGKIVRRDTMKAILVSIVLYFAATAAHSMPISVLNANGLSATIPISDQCGDRCGSSRSYVRDRRTVMAGYSGGYVLVRDPLIQRRPYCPFGSYVACIMSGTYCIDLCH |
Ga0207529_105277 | Ga0207529_1052771 | F000569 | DIKKVWLPGAASCLLFFGFYWVLIWLPFDKTRFQFLAIPYLVLPFVGALAAYWSRRMKGSVLERIVSALFPVFAFVALFAVRIVYGLFFEGVPYTLPHFLAGFSVTLAFIVVGGLLLVLGAWPFCRPHLREQLP |
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