3300026801: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A2a-12 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026801
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0072081 | Ga0207551
• Sample Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A2a-12 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 26665488
• Sequencing Scaffolds: 16
• Novel Protein Genes: 18
• Associated Families: 18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 35-63-5	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	2
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001033	Metagenome / Metatranscriptome	799	Y
F006027	Metagenome / Metatranscriptome	383	Y
F007875	Metagenome / Metatranscriptome	343	Y
F013811	Metagenome	268	Y
F016464	Metagenome / Metatranscriptome	247	Y
F018801	Metagenome / Metatranscriptome	233	Y
F025757	Metagenome	200	N
F032294	Metagenome / Metatranscriptome	180	Y
F034564	Metagenome / Metatranscriptome	174	Y
F038225	Metagenome / Metatranscriptome	166	Y
F038786	Metagenome / Metatranscriptome	165	Y
F040707	Metagenome	161	Y
F056978	Metagenome / Metatranscriptome	137	N
F074054	Metagenome / Metatranscriptome	120	N
F079182	Metagenome / Metatranscriptome	116	Y
F079346	Metagenome / Metatranscriptome	116	Y
F095650	Metagenome	105	Y
F105318	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207551_100224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1318
Ga0207551_100311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 35-63-5	1209
Ga0207551_100374	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1143
Ga0207551_100778	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	934
Ga0207551_101185	Not Available	819
Ga0207551_101263	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	807
Ga0207551_101321	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	796
Ga0207551_101934	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	716
Ga0207551_101960	All Organisms → cellular organisms → Bacteria → Acidobacteria	714
Ga0207551_102192	All Organisms → cellular organisms → Bacteria → Acidobacteria	690
Ga0207551_103365	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	605
Ga0207551_103623	All Organisms → cellular organisms → Bacteria	592
Ga0207551_104837	Not Available	542
Ga0207551_105554	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	520
Ga0207551_105603	Not Available	518
Ga0207551_105973	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	509

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207551_100224	Ga0207551_1002241	F025757	MRSRPAMWVALGIVAHCAMWLAMHDEEILIRLVASTLVYLGLLKFSPNAARVWLCAGGALAGAFLLGTTALSLLMSFPGRWSGFGLSIGATLVFLASGLLIGFWVVHRWTEPAQRRESQPGQKA
Ga0207551_100311	Ga0207551_1003112	F034564	MNRSGRLLRYWYGAICIAGLGFGLLGERRPFGQSILAHPFIVYAFVAAAGLVVIRVVRQQPVPELIPERALGLGCAAGVALFLAGNFIAAHLVGR
Ga0207551_100374	Ga0207551_1003742	F001033	MNFVSHTKSVAVPHQILGASTNEKRELLVCGRSLIARLTIAVFVFQMLGVTSVVHAERPDSTAGTSSAGTRKLFINPSSTSVALGKASLIVSPLTHRDGNYVGDYQLKVRPYFFKSEKGSLLLAASDDAVRKLQAGTAINFTGQAVTHKDGRTHIVLGRATPSSRDRGSVTFSIVTDDARIVFNTSYHFPAPRP
Ga0207551_100778	Ga0207551_1007781	F074054	GCRSSSGCGTNGHFPMSTRSAHRSTPIAGARGDCSGAFRCRIFNMSQVPDRAPDGMLLRLSVPAGGDLRVVAVDIAKRISEYLREGVPDTQGLRVAIEGVVSKVAPAAVDAEITFDFREVNGELQIEAHCGSRSSEVRCPLPA
Ga0207551_101185	Ga0207551_1011851	F013811	ILAFAIASPLHAQGIEVFGGYSVNADYVQNRPAILVADQKVSPFFSHGSGPTGFEASFKHDVRNGLGIKVDVSGYSDTFPPGPAAYCQPDGSTAGSACGTGLTFQATGRALYVTAGPEWKIRRGKRFAPFAQTLVGIVYTRSTFMMNGSDVQYANPFTGGVLLFTSAGFPPDRSIDYADAHADAGLALAIGGGFDIRLSRRIGLRAAMDTIRRFWYVGCFPTSRPTPKGESSFGPRRTSDSGRIMFA
Ga0207551_101263	Ga0207551_1012631	F006027	MNRQNLFSDEWDGENEQDRTRHRIFWRPDDARMGATLYELAPDAPGMRMHMHFGAEEMFFVLSGRPVLRNHDGEEKLGTL
Ga0207551_101321	Ga0207551_1013212	F018801	LGVFLKPYALENSRCIGFAGLGPYCFEQASSMPEVIKYGSVAVGFAFLYGGRLQIKRRRNGR
Ga0207551_101840	Ga0207551_1018403	F105318	ARSWVMPMEEFIHQQNLERYRKMLSEKTHEPQRQTIVRLLADEENRDDPLSKLDS
Ga0207551_101934	Ga0207551_1019342	F016464	SDAEQDHGATHDESANNSPDQYAVLCAGWNPEMREDEHEHKNVVHAQGVLDQVAGKKIEPVMRPFHTPDDSVKRQRNDHPKDAAPRRCGHAQFAAAPTKRQQIDPNGNEYANVKRDPKPDARRHAGEGFMRKAVRQSQIARRADGTYTSQGRICPHKWMLN
Ga0207551_101960	Ga0207551_1019601	F032294	GRGGGGQAVEMNVYINPRGGVEEDYPLHAHTRDFLDKLKAKDRKTNAPMEVGYNSALPALLALEAMKDNKVLGWDPVARKTKAL
Ga0207551_102192	Ga0207551_1021922	F079182	RRIVALSYDLWEERFAVTTVEKRAQSASHLALAAAEAWCVDQVAIPLNALGAFGRDLPFWVRLEYRVLDGDTPADSTESGYTLQGLIDALSRRRKTDSSTHALEAGPFRLPARTSSRLR
Ga0207551_103365	Ga0207551_1033651	F056978	MRRTLKRTKSKKHQGRVRDLKPVKGSGKIEHAVEHHETAVTEDAKELKKLREEVTQIKSDIANILEALQTLEAWVPMSRAEIPQYAWAYRKFVDISTRLRQEARSH
Ga0207551_103623	Ga0207551_1036232	F038786	MSAKSTESEVLAQELDTLGNKLRGLESRLAEVEKIIERLETAALTTARALEEVSTHWD
Ga0207551_103832	Ga0207551_1038321	F095650	LGSATWPAFGPDPFSPPFCCGHGWTMIPLEEMLHLISEQVYAVRHYAGSHPHGAPAGRLGFSWQPTNNFNLPPAEWLAARQALAARIASAIHYAYREGGASAEGACSPSESGIDWCAGGDVPGATFDPRWAMFESWN
Ga0207551_104837	Ga0207551_1048372	F040707	MADIAPLLERITALLKNRSADPGKPLVTEMEDTLTDGYARALQLESERLRLERRIGELAHSFDGLEDADELKSLAGRLRDVDAELDGLRSQLDALQKHLAQVRAAA
Ga0207551_105554	Ga0207551_1055541	F079346	ATQRTPGSTGVPPSGQGTPISHIVGVGGMVGSMSTFGATARWWHDKHLGVQVGFTRDAMSSDTAAGRVTSMQIEPGVVYALFDRVPGYVWIRPYVGSALSFRHQTWKDTAPVPMEPDSDNGVGYRVFGGSEFTFASVTQFGLSAEVGYRHVPTAFTGFEPDRMSVAVIGHWY
Ga0207551_105603	Ga0207551_1056031	F038225	MKRFSLALLGTVGAFFILTPAQAADYRVVQYNDTKICQVVDMAGPFKPIRSNYAVLTKKSIPTFDAAMKARADVSKKAKCTFL
Ga0207551_105973	Ga0207551_1059731	F007875	EGGNLVFLQANPFYRQVRIDRERNAVVMTDYDAREGRSDFAIAGVGYDGCCFPKVRAVPYVATAGRDYQRVRWLFRGTGIGPGDAFGVAASESDRVDPQLTPHDHVVAAQAIIRGKRGVINAAMVWSRDGRGQTFATGNYTFLRMGRGVTYKLLDNVWRRLVG