3300026787: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09K5-12 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026787
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0091558 | Ga0207633
• Sample Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09K5-12 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 25809101
• Sequencing Scaffolds: 19
• Novel Protein Genes: 20
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	8
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006430	Metagenome / Metatranscriptome	373	Y
F006533	Metagenome / Metatranscriptome	371	Y
F008921	Metagenome / Metatranscriptome	326	Y
F011785	Metagenome / Metatranscriptome	287	Y
F016228	Metagenome / Metatranscriptome	249	Y
F016806	Metagenome / Metatranscriptome	244	Y
F022408	Metagenome / Metatranscriptome	214	Y
F025757	Metagenome	200	N
F040358	Metagenome / Metatranscriptome	162	N
F040716	Metagenome	161	Y
F051273	Metagenome / Metatranscriptome	144	N
F055072	Metagenome / Metatranscriptome	139	N
F063749	Metagenome / Metatranscriptome	129	Y
F064703	Metagenome / Metatranscriptome	128	Y
F070078	Metagenome / Metatranscriptome	123	Y
F073526	Metagenome / Metatranscriptome	120	Y
F083399	Metagenome	113	N
F090480	Metagenome / Metatranscriptome	108	Y
F096141	Metagenome / Metatranscriptome	105	Y
F097649	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207633_100414	Not Available	942
Ga0207633_100436	All Organisms → cellular organisms → Bacteria	929
Ga0207633_101082	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	750
Ga0207633_101290	All Organisms → cellular organisms → Bacteria	719
Ga0207633_101322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	716
Ga0207633_101472	Not Available	695
Ga0207633_102097	Not Available	633
Ga0207633_102241	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	623
Ga0207633_102290	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	619
Ga0207633_102333	All Organisms → cellular organisms → Bacteria	616
Ga0207633_102718	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	592
Ga0207633_102874	Not Available	583
Ga0207633_103228	Not Available	565
Ga0207633_103392	Not Available	557
Ga0207633_103538	Not Available	551
Ga0207633_103855	Not Available	537
Ga0207633_103987	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	532
Ga0207633_104126	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	527
Ga0207633_104876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	501

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207633_100414	Ga0207633_1004142	F025757	MSYSTSISLFWLEMAVLIGCVVLSIRMRSRAAMWVALAIVAHCAVWLAIHDEEILIRLVASALVYLGLLKFSPNAARVWLCAGGALAGAFLLGTMALSLLMSFPGRWSVFGLSMGATLLFLTSGLLIGFWV
Ga0207633_100436	Ga0207633_1004361	F011785	ILTTFTAVAALVGGISIAQAQGTMGQTGSGMQAPQATGTGAFCIATSPGGSLNCKYASLAACEKDAKPQNLNCSPNPKKSTTGSKQ
Ga0207633_100801	Ga0207633_1008011	F040716	MRHFPMAAAAILALSVLAVTGHSGLAATPKCNAELRKCNSHCNLVYESGRANRTCRNRCK
Ga0207633_101082	Ga0207633_1010823	F083399	MAEESAVSGDTRSWGFFATFVLGAIAFLAGQLAGMAALVGWYGFDLRNVPVLSQHGGAIIVFIFVSAPVQVAILALAAGYKGNIADYLGYKLPRRGEVVLCL
Ga0207633_101290	Ga0207633_1012902	F055072	MNMKHQWPNARSGKTHSATFLIWLISGLYLLGMVWFLLSTVGDYSAQDTPPWLVSAVGACTVSYGILMVMFWPFENVSPEGRP
Ga0207633_101322	Ga0207633_1013221	F063749	RPMKSLLVLVLALAATTAAAKPSPFEPARSANPIALARTSAEFNTGPAGATLERNYFRVPEADADSGVFLCRFEPSMFAKVRLTQSCR
Ga0207633_101472	Ga0207633_1014722	F064703	RIVLMRKSLTVLIVALLGVFAVKSIIGPGKMNLGESVKYPVPTYDLHVAQPVDMKNFPSDVIPLP
Ga0207633_102097	Ga0207633_1020973	F096141	TAVSLVTPYNEQIFAASPDAAEGPEKTVPQGKDPPGNDNEDHSNPTTEHKGVIKPPQTGDEGIYTQAPNPNAGTEEEVIPPPGTPESQQPKVEPR
Ga0207633_102241	Ga0207633_1022412	F016806	MRIGMIGAALCVAAGLCMIAGLAVDLDSTEAKVLMVAAAVLFVPGALVTYA
Ga0207633_102290	Ga0207633_1022901	F073526	VSVDHPELAAASERLRAEQTVPALLGALARAYVDVVGARSCTISRVIGDLLVDLIQYQQEGEPRRLGHGYLISDYPLTRAVIEEQEPRTVF
Ga0207633_102333	Ga0207633_1023331	F040358	MRIAIFALAILAGSGAAEARQVEVVSTSPRHIEIAAWCTAGSNCQQEASDVAQGYCHGPDYPRRALYVRSGLVERGFFSERVIFVYKCNR
Ga0207633_102718	Ga0207633_1027181	F006430	TPMNSVATTFSSPRFQRYLLWFGVAVLAVGAAALVFTLVGGSDKTRVNPDKNFHPTLPAKATPLRNEQGVLIKTYAQLDSQIRSAVSTFIGTAVAREHVDQSWNVVAPSLKSGFTEAQWKKADSLPVVPYPGVDMKHVQYYLDYASTKEILVEVGLAGKKGVSTRPVTFQLGLVPAGKGHWLVDYWMPRWTPPVPQG
Ga0207633_102874	Ga0207633_1028741	F097649	MVDAEAMNPAAGKKRRRRSILTKDVMAGIPVLVQQGLTAEAIAARLGCTVGTLKVRCSQAQISLRVPKEVKVVPLVPLAPVPTTPKSSQSKRCFAFAVPTTLQLSRVAMSRLRQRANAMGVTEA
Ga0207633_103228	Ga0207633_1032281	F022408	RVRVAIPITVRCECGETHKANLGDVVECSCGRRFDTSKIAGSNFPQVREHQAKARLYVRIGAVFIVAAGLIAYFVWDFWAAAVTVPLAAMLWFWYIRRWFMRRFVPSPGELPTLDLEASN
Ga0207633_103392	Ga0207633_1033921	F051273	MRRFIPLLILLGLVFGASYASALINRVMGPWSSTAIHQDGSLSHMQFGVDLPRPEWVPVYPGAWVVGGSKITSVEHPAGF
Ga0207633_103538	Ga0207633_1035381	F008921	MSNGSQAAQLLRDDHHSTLHAFFLAAKESGYTDFELQLVTSPKGRIEFCISPREHSEMSAKFEVRGNTVRAAAGEASVVPVEDADVRLEYGGTRSGEEPVRVSPGARSSHPRRPATVTDRDPQK
Ga0207633_103855	Ga0207633_1038551	F090480	NKIFACIVFTATSGFSFAVATAMPLVPMGTEQARLTIPVADGCGFNRYRDARGICRKKYVITRHQGRQPVYTGCGGLNSHRVCNLYGHCWMVCD
Ga0207633_103987	Ga0207633_1039871	F070078	MSDTPEHQGAETEKGFGTGLRAQLQRRREGEGEQAESQGSTNVELRLELTARPGNGETIEAIVGPDVDGLR
Ga0207633_104126	Ga0207633_1041261	F016228	AVLLVVVGALSALGFARHEQRIREQDQLASIASDLAGRKVAVRCPSFLAGLVDVHGEAGRVQFDDSGRPADHTDLSPETCKALRHLDRVDFGCLERGDCGLSQFSAGWAAHTLAHEAFHLRGFQDEGVTECYALQNTAYVAERLGVPTRQAEVIQAWLYKRGYPNEPAEYQSSQC
Ga0207633_104876	Ga0207633_1048762	F006533	SPSSCYAESVLSHLEKVQKLPLEVQTDIAKRVDTYLSVARAANNEAIVATVASSAMQEQAKAIGQGGTMDPRWAAPAIVEAWCYATMSLSKGYLDQLHAQAIIGAIEAFTLSRLTR