3300026747: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A3-10 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026747
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0072038 | Ga0207587
• Sample Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A3-10 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 22335385
• Sequencing Scaffolds: 12
• Novel Protein Genes: 13
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
Not Available	6
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000268	Metagenome / Metatranscriptome	1411	Y
F000569	Metagenome / Metatranscriptome	1018	Y
F003816	Metagenome / Metatranscriptome	467	Y
F004874	Metagenome / Metatranscriptome	420	Y
F007536	Metagenome / Metatranscriptome	349	Y
F016464	Metagenome / Metatranscriptome	247	Y
F017145	Metagenome / Metatranscriptome	242	Y
F017166	Metagenome / Metatranscriptome	242	Y
F019867	Metagenome	227	Y
F026421	Metagenome / Metatranscriptome	198	Y
F033346	Metagenome / Metatranscriptome	177	Y
F083399	Metagenome	113	N
F097285	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207587_100008	All Organisms → cellular organisms → Bacteria	2257
Ga0207587_100105	Not Available	1110
Ga0207587_100412	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	819
Ga0207587_101114	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	646
Ga0207587_101320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	620
Ga0207587_101723	Not Available	580
Ga0207587_101860	Not Available	570
Ga0207587_101928	Not Available	565
Ga0207587_102346	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	539
Ga0207587_102549	Not Available	527
Ga0207587_102581	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	526
Ga0207587_102771	Not Available	517

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207587_100008	Ga0207587_1000082	F007536	VRLGLESASFPLTPALSPRRGARVEELTCFVNMRLAMDMLNLHLRLIRSALGQKAGAKPMGLPHRERSQGRAAMHGHEVASLPGEMGPPLGQSHERASPFLAKFGLSASLTTGRDAAHAVSGAPMALVLPATTSCIQYVRFTDEVPRRLVPVGRVNPGYKSHTKSRGHASETGTAFPRPRLKGCQQRQSRGARLRLAEGACSERQNLRVLLGPLGFMGPVSPTNAATKWRDGTSSRQLAGLLSNSPQQPKPGQAAVRSR
Ga0207587_100105	Ga0207587_1001051	F017166	VNKIMFIVALGAMLFIGWLYLGEMSDVRSIKAAVTAAADSTAVALSQSANPERNTDADADGIFIKHIQTSSTLEDVSVKQSVEPISAGRLRQSVKVTARARTTLSEFFNMQG
Ga0207587_100412	Ga0207587_1004122	F000268	MRVVAVMLLLSAGVAAEAMSYSFSKASGRLGGPIRFEFYRDSTTRPKTDIKSFTVSTRTADDRWKAMWSILSGRGLTQPIEYGVTPPGFTTMIQPQKLIPGRVYAGFATDGHGGSSGVTFGFDKNGRMTFPDSFDR
Ga0207587_101114	Ga0207587_1011142	F016464	PPHQSDAEQDHGATHDESANNSPDQYAVLCAGWNPEMREDEHEHKNVVHAQGVLDQVAGKKIEPVMRAFHTPDDSIKRQRDDHPKNAAPRGSTHAQFAAATMERQQINANGNEHANVKRDPKPDARRHAGEGFMRKAVRQSQIARRAEGTYTSGGRICPHQWMLN
Ga0207587_101320	Ga0207587_1013202	F097285	EKEAAKEEAQGPVSHSREWLKSEEGQASLRQSARR
Ga0207587_101723	Ga0207587_1017231	F017145	SHRHWMLRDIPRTYVLVVWLAFGAALLIYSNDWHPSGWSALRQEATATKPPVSVTEQYTGSIIIVPSRGEDCRQMMLDNRTGRMWDKGVVNCYEAVSRSEKEQRGGMSSLRINAIGKAFNRRDE
Ga0207587_101860	Ga0207587_1018601	F019867	GGYSANADYVQNRPAILVADQKVSPFFNHGSGPTGFEASFKFEVRNGLGIKVDVSGYSDTFPPGPAAYCQSDGSTAGIACGTGLTFQATGRAFYVTAGPEWKIRRGKRFAPFAQALVGIAYTRSTFMMSGSDVQYTNPFTGGVLLVTSGGFPQDRSIHYADAHADAGLALAIGGGFDIRLSKRIGLRAAM
Ga0207587_101928	Ga0207587_1019281	F083399	MAEESAVSGDTRSWGFFATFVLGAIAFLAGQLAGMAALVGWYDFDLRNVPVLSQHGGAIILFIFVSAPVQVAILALAAGYKGNIADYLGYKLPRRGEVVLCLAILAAMIAVGDAMSWLAGRSVVDRFQTDIYQAANSVGQLPLLLAAVVLLIP
Ga0207587_101992	Ga0207587_1019922	F026421	ELIEAVAFELNEGVKVHICSPKAFGDSIQPGSPPPATAQLSFLFSPRGFGAAVAAGKFLDAPGRIHELLFAGEKGMTSGTNADLNIATRGASVIHRSACAHHIGLVIFWMNGCFHLLNEARNLFVTFGFCKR
Ga0207587_102346	Ga0207587_1023462	F004874	MGFNAMQPGKVKRGDLLFLIAAVIVVGALLAWAFFGS
Ga0207587_102549	Ga0207587_1025491	F000569	MDLHIKKVWLPGAASCLLFFGFYWVLIWLPFDKNRFQFLAIPYLVLPFVGALAAYGSRRMKGSVLERIVSALFPVFAFVALFAVRIVYGLFFEGQPYTLPHFLGGFSVTLVFIVVGGLLLVLGAWPFCRPHLREQLP
Ga0207587_102581	Ga0207587_1025812	F033346	YMMTCTHCGYEVMFRTEPDAKTEGVRHLRAFPTHGVKVTPSEDALIREAERLTR
Ga0207587_102771	Ga0207587_1027711	F003816	MKTTKALVAMGISVGLTLGAAAEPGKHPGEKVDLKSLSASVQKTVKEKAAGGQVVKVYREDDPDGKWNYEVSVKANGKDSLFEVDPNGNFVKQHE