3300026745: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08K1-12 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026745
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0091548 | Ga0207576
• Sample Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08K1-12 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 20487780
• Sequencing Scaffolds: 20
• Novel Protein Genes: 21
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3
Not Available	11
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	2
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001604	Metagenome / Metatranscriptome	664	Y
F003059	Metagenome / Metatranscriptome	510	Y
F017759	Metagenome	239	N
F021340	Metagenome	219	Y
F024641	Metagenome / Metatranscriptome	205	Y
F026346	Metagenome / Metatranscriptome	198	Y
F030545	Metagenome	185	Y
F034564	Metagenome / Metatranscriptome	174	Y
F034995	Metagenome	173	N
F040398	Metagenome / Metatranscriptome	162	Y
F043582	Metagenome / Metatranscriptome	156	Y
F048418	Metagenome / Metatranscriptome	148	Y
F049092	Metagenome	147	N
F054151	Metagenome / Metatranscriptome	140	N
F054841	Metagenome / Metatranscriptome	139	Y
F057709	Metagenome	136	Y
F061134	Metagenome / Metatranscriptome	132	Y
F068095	Metagenome	125	Y
F087420	Metagenome / Metatranscriptome	110	Y
F092329	Metagenome	107	N
F095664	Metagenome / Metatranscriptome	105	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207576_100070	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2096
Ga0207576_100199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1646
Ga0207576_100669	Not Available	1106
Ga0207576_100722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1064
Ga0207576_101027	All Organisms → cellular organisms → Bacteria	929
Ga0207576_101326	Not Available	835
Ga0207576_101634	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	763
Ga0207576_101734	Not Available	742
Ga0207576_101879	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	714
Ga0207576_101966	Not Available	699
Ga0207576_102121	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	674
Ga0207576_102152	All Organisms → cellular organisms → Bacteria	670
Ga0207576_102328	Not Available	644
Ga0207576_102507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	623
Ga0207576_102545	Not Available	618
Ga0207576_103154	Not Available	565
Ga0207576_103341	Not Available	552
Ga0207576_103402	Not Available	548
Ga0207576_103685	Not Available	530
Ga0207576_104149	Not Available	505

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207576_100070	Ga0207576_1000704	F054151	ADHFRALADGLSVRAVTERAPAQRAELQRLAECYAELAKQQSPADHFARGVGPR
Ga0207576_100199	Ga0207576_1001991	F061134	VVVTPQTIIAAAAPAKKEEIKAGTPMIIFGWDKQPDGSVLAKTLYIGRSVAPAM
Ga0207576_100669	Ga0207576_1006692	F017759	MLSGAVIVHGCNPLLLFGVVVGLLNSECPQQDRAYESKYGADSQHIELQGKVHGSASLVDARRLARNQRRPKVPAIGPVLFAGEIAYRICAMDNRLIVRLKKSEDPKILTVQNSRGTEFFMANLRQ
Ga0207576_100722	Ga0207576_1007222	F003059	AMVRAGIAAGMLAGAAIVMAAMPAAAQVRDAVYRGTLICDKLPFSAGKGREAIEVTIAGGTVRYSHVVRLRDAAEPVSEQGKGSLNGQDIELQGSWKAGNRQYEAKYSGAFVRRHADLKGTQTWTDGGKSFTRACTGTIKRPFRVFLPGEKK
Ga0207576_101027	Ga0207576_1010273	F024641	MKHVAPKESQSLAPNLCGCCGSLMRLVGSEPHPVEAKADLLTYACTACDELLVLQI
Ga0207576_101326	Ga0207576_1013261	F057709	MSEFDLKVALIIFVTKFIDPFAAVPALVAGYFCRTWWQVVIAAAAVGIFV
Ga0207576_101634	Ga0207576_1016342	F021340	WHVTIVTMFFVVVLGASLFLGTVMVIGTFHGVDPSNELTANGRAGRIARTLQDGTLCHYMIFDNKTAQTVEDRIGRCDENKPKPKQEKPATFTWGK
Ga0207576_101734	Ga0207576_1017341	F087420	GGAIVLVLCALPHAPASAAKPPYAGCVVVTKQEYDSAKKQHMLRTRYTEYVRTGLPGRRQYWYCR
Ga0207576_101778	Ga0207576_1017781	F095664	MPFDRRHVLAQWGGTLPGGEIWSNSLRLASTDTGPDADVPDHDAMVEWLTTYAKDAVAAWHGSFDLKCSNQAKLAYLKMNVVDIAGRYIEQNTLEYLYSPVVPGGSASNIHPTQIALAVSLTTEFSRGHAHRGRFYVPMPVHVVDATTGLISVSDAIQVATAAKTFIEALADEPGSPPVVLVTHHVEEIPRRFTHGALMRDGR
Ga0207576_101879	Ga0207576_1018792	F048418	AGTEFAGEKDREGDATSGDVRMPIHLPPKARVKAVPARRQAAINSIDWLGLWALSLGFCAIVLAGIAYFTIGDNIGASSILMGAAAIIAVIVRFGADRDQARDGN
Ga0207576_101966	Ga0207576_1019661	F001604	MTDILDNARVSDEEPKLIVRKASHAPIWSVWAVLEGTPSEEIFEGSSEEDASSWINSGGR
Ga0207576_102121	Ga0207576_1021212	F026346	SIVMETDKKGRCEERQLDNRTGKMVSANYVNCDARLEPERDSTPSENINRERIRAILGAFKK
Ga0207576_102152	Ga0207576_1021521	F043582	QREKKMPLLFYFPLIIWMGVLEAMQDEMRVAATAKARR
Ga0207576_102328	Ga0207576_1023281	F034995	MTKILALIAGIFLIGFPAWMLKEMSVPLPQYRKGRYADYVLLAYELLAVYGSVLLGIAVHVGRAKWSGQSLFPFGLFKAGMWGVLVAASAYFVAGGVYGLISYGAFDKVIGGTLWGLLAIFWGVFGALVSAGLALLFYAWRGSAGYQPPGSAGLGTPRS
Ga0207576_102507	Ga0207576_1025071	F040398	SAVPNFLRLCVATSGKVLSERRDDLVKFVAAEMDAYKFALANRAETIKVSQEMTHAKPDDKRAEFITDEAIKDKQIDPTLSIPLDRLDWMQNLFLKAGVIKQTVPIESIVDKSVNADAAKIAGK
Ga0207576_102545	Ga0207576_1025451	F049092	MKFIEPVFETGGDLWRTLSNVPDADARALNEKLARQSAELNRRLTEILELHNVHQRQANELQDAHDEIDRLSQTVSALQEAVTQYQAGAAAAEDEIVLLESEKAALQAQLDGAFEESKTLADRVLAAEAAAKRREENIASSLKQIDFLNAELMAASSER
Ga0207576_103154	Ga0207576_1031542	F068095	MRDWLFLLAPPALIFYFIAYPDKFYEFVFWAKRLI
Ga0207576_103341	Ga0207576_1033412	F030545	AGLLLMAKDALGLRLWDLLPADIPILARGIAIGLTGIGLVSLAAYGIVRGIGWAIDKSV
Ga0207576_103402	Ga0207576_1034021	F034564	WYCAVCIAGLGFGLLGERRPFGQGILAHPFIVYAFVVAAGLLVIRVVRQQPVPELIPERALGLGCAAGVALFLAGNFIAAHLIGR
Ga0207576_103685	Ga0207576_1036851	F092329	MGMDLTKRLPDHARRCYGLPPGAPCPAHDDGTWPEGCDCYGQGGGGMKYSGSLTWAVVIAVMLAIAIALISIGLVVNALGADNLTPCLSKAEARVKYPKQIIYWHTINHCWDNVPVRVAHPRKTDRLPTVDANSNVAPRRATAVASVRPSLPTVFYPSLMSG
Ga0207576_104149	Ga0207576_1041491	F054841	VQVTSIRRRSNGTVDMDVYRRKAFLLRRETTNQILRRLGHSVLARLIGAIAILVSYVLFLPRNPLPQGAGSTFAPAKVSVLPSSLRTPKSNHRSQ