3300026699: Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN574 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026699
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053063 | Gp0054406 | Ga0208707
• Sample Name: Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN574 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 14015963
• Sequencing Scaffolds: 29
• Novel Protein Genes: 31
• Associated Families: 31

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3
All Organisms → cellular organisms → Bacteria	6
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	13
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): grassland biome → land → fertilized soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Manhattan, Kansas, USA
• Coordinates
  • Lat. (^o): 39.070856
  • Long. (^o): -96.582821
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000120	Metagenome / Metatranscriptome	2081	Y
F000268	Metagenome / Metatranscriptome	1411	Y
F000402	Metagenome / Metatranscriptome	1180	Y
F001757	Metagenome / Metatranscriptome	641	N
F002517	Metagenome	552	Y
F002553	Metagenome / Metatranscriptome	549	Y
F003416	Metagenome / Metatranscriptome	488	Y
F007810	Metagenome	344	Y
F018064	Metagenome	237	Y
F019044	Metagenome	232	Y
F020056	Metagenome	226	Y
F024391	Metagenome / Metatranscriptome	206	Y
F025339	Metagenome / Metatranscriptome	202	Y
F027930	Metagenome / Metatranscriptome	193	N
F027956	Metagenome / Metatranscriptome	193	Y
F033747	Metagenome	176	Y
F034864	Metagenome / Metatranscriptome	173	Y
F035025	Metagenome / Metatranscriptome	173	Y
F037827	Metagenome / Metatranscriptome	167	Y
F038375	Metagenome	166	N
F038845	Metagenome / Metatranscriptome	165	Y
F048130	Metagenome / Metatranscriptome	148	Y
F052034	Metagenome / Metatranscriptome	143	Y
F056934	Metagenome / Metatranscriptome	137	N
F058773	Metagenome / Metatranscriptome	134	Y
F063524	Metagenome	129	Y
F067224	Metagenome	126	Y
F069922	Metagenome	123	Y
F077144	Metagenome / Metatranscriptome	117	Y
F085324	Metagenome / Metatranscriptome	111	Y
F100780	Metagenome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208707_100006	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3138
Ga0208707_100022	All Organisms → cellular organisms → Bacteria	1980
Ga0208707_100026	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1773
Ga0208707_100031	All Organisms → cellular organisms → Bacteria → Proteobacteria	1686
Ga0208707_100111	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1265
Ga0208707_100246	All Organisms → cellular organisms → Bacteria	1041
Ga0208707_100270	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1012
Ga0208707_100459	Not Available	883
Ga0208707_100477	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	875
Ga0208707_100584	Not Available	825
Ga0208707_100629	All Organisms → cellular organisms → Bacteria	808
Ga0208707_100639	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	805
Ga0208707_100720	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	776
Ga0208707_100859	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	740
Ga0208707_101070	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	691
Ga0208707_101114	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	684
Ga0208707_101351	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	649
Ga0208707_101671	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	613
Ga0208707_101718	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	607
Ga0208707_102026	All Organisms → cellular organisms → Bacteria	574
Ga0208707_102027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	574
Ga0208707_102198	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	558
Ga0208707_102327	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	546
Ga0208707_102391	All Organisms → cellular organisms → Bacteria	542
Ga0208707_102447	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	539
Ga0208707_102544	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	531
Ga0208707_102620	All Organisms → cellular organisms → Bacteria	525
Ga0208707_102641	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	524
Ga0208707_102647	Not Available	524

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208707_100006	Ga0208707_1000064	F003416	SYHDFIRTTVAELFHLFVIMDPLTFVSSQRQESDSAAQRRWENEGGNPGQLQQSLCDDRKENATTGLARDTLKVATKVNGTCI
Ga0208707_100022	Ga0208707_1000222	F000268	MLMRVVAVMLLLSAGIAAEAMSYSFVSKASGRLGGPIRFEFYRDSTTRPKTDIKSFTVSMRTADDRWKAMWSILSGRGLTQPIEYGVTPPGFTTMIQPQKLIPGRVYTGFATDGHGGSSRVTFGFDKNGRMTFPDSFED
Ga0208707_100026	Ga0208707_1000264	F100780	MKDHEIDQLLRSAAQAGDEAPAEMPFGFDTRVVAL
Ga0208707_100031	Ga0208707_1000311	F024391	MQSGFQNTWHFTAKCGFTLLLFQWCGCAHLASVKERPARLPAGLPVEEPLESAKKYLTAAEHEQPLPALGHDLLAAKISYEVLERHPKNESARSIYNFAVAR
Ga0208707_100111	Ga0208707_1001112	F002553	MHGIQLREIIRDAEVAHAIRPVVLKYLLNVEDTIKALMTCGVPRATNVAQIATSKLWNQ
Ga0208707_100246	Ga0208707_1002461	F038845	FYERDLPQIAAAETARRVRADVVVLLLDNGDGLMEVSGGVGLTPAERRLSVEYGRDVMRELFRAGVGLVEDTDRVRGALAGIPGSRAETLVMVPLVHERLGFGVLMAGRNRSQTGVPTEVFSDAEVEALMGFADAAAASLRTAVLLRHLKGQLKALEEDDS
Ga0208707_100270	Ga0208707_1002701	F037827	MRSFLTYLSERCKWASKGTGAVCGWVSLIVGATVAVLLWFYPRWFHDHISDRMNACVLVIVPLLAGGGLFLIRWFVSPYPIYMQIRRELDTLTDAKQDERAKAVEGCFERSAAVLKQHGSVLLPFHALSRAEGHRLESNE
Ga0208707_100459	Ga0208707_1004592	F052034	VAIKGKSKRSQGRPVRRPATGPRIHTVERRLPWYRATAFPVTLAVIALIGTLVAAQNRVQEGWTRDDVRRFTADLRAQTDQLPAVIGAGTKDLPGFPSAQELTTGKITPKRMAVRASGWSAKLGEIQQRVQAITVG
Ga0208707_100477	Ga0208707_1004773	F027956	LEYARAYAETFYGMPNPDWGEAQVAWQHYLELSTDRNFAYLHLARVSVKRHKKAEALSFLDKVSGSPYSEVKENLRKQAEAL
Ga0208707_100584	Ga0208707_1005841	F048130	MIALIDPAGRPALTIAGIFFLIINLLAGAYILRHRRRLFGPDARVDGDRNATRYLQVVVITIPWLFLTFRLVAEIVGFWTD
Ga0208707_100629	Ga0208707_1006292	F033747	MKRFILAFIAAYIFIFIWGWLLNGVLLKDIYAQTPNLWRSQDEMMSLFHWIIIGQALIVFAFIMIYASGFAGGGVIAGIQLGVLLEIAAIGMRMGFYAVQPIPGKLILYGSVSGI
Ga0208707_100639	Ga0208707_1006392	F001757	MMRVLERLQDKATSGAGKKLVLPEPRRVRFLIRGEGPVSAGAVTIECCPESTKAGKFWMELATIPVPADYGLAQYYTEEASGLFRARISQPVSNGTVTVTPLVSRGRPNRPDRTK
Ga0208707_100720	Ga0208707_1007201	F025339	MQLGGYFDPALLLAAQRAFISSESFLRPAGVSVPFFLAGAVFLPAALLLAAQRAFINCDSFLRPAGVSWPFFLAEVAVVPPPLSLAQRALAAAASFARVEGEK
Ga0208707_100859	Ga0208707_1008591	F002517	ISEALRKLSQLPTLGPPRLVTLRYSDIGGSEEDAREKKSGVRDPSYAHGIVVKMGGQEHFSFFDHFEELLFDRIGTPPRNSAANVEQIRQTTNDRIDHTVFEMNKFVVDKNPMVGLAWRDISDAVQAKFRDVPEPARQKQIEDLTKQTYYVYIFLDLYARMDDLRSRGIMSPNDEMIVEWKHDWLPNLMGSEIGRWMLDKNLVEYYSDSMIKDLREAAAASGKSRTPPVDTH
Ga0208707_101070	Ga0208707_1010701	F056934	VVQLKDAIEKFRDGPEGLEELVEALTAKFTPKNAILLREVIAKQKSLQEVKTAADNYLKRRKNVAQWPTKQLEPELVRALVDYRSRLHKEDDWLLSRTGMREVASDFNLIHDYASQTKDLDAQLEVYGSLFLTQAQSAEFKSKSDEE
Ga0208707_101114	Ga0208707_1011141	F035025	PKTSTLPHPSRHTKFREKKRHKTTVILIETDVAGQAKTKEVKKSTDDPAEARNWLIDRLSEIHAGKYLAGIIDQKTVEAMMPSRTERLAFWRDEYALDSFTVLQRLLAFMLSQSQQGPQMRSWLTVSATVLYARPFKQWPEVRLAEDDVPIKYREVHKEVLKYRDKVIAHRDPDAHKREVWGNELPIVSEGNNIFIPTTNPAMEDDIAGSLLELVEILIPMLKARSSS
Ga0208707_101351	Ga0208707_1013512	F034864	MHVYGLLLAIAVAPAYIPGGTGSFWKLIGLLLPIVGFLIALWLIWVGLRWIIEKIAATFRRK
Ga0208707_101433	Ga0208707_1014331	F000120	MKKYNSIILILSLACAGMMLISCTTGPGAATAQPPNSGHVLIYRVANFGSDLSLVVSVDGKDVGSFTEGRNYSGYLPAGQHVITARVDPNQTGAQPGRKTLIVKAGQTYSYTAGWSGGNVVLVRNQGQTVPTY
Ga0208707_101671	Ga0208707_1016711	F069922	GQPYNAGAAWEAYLGAVAFAVFGVSVISLKSCILVLSLLCLFLFYWMCLALYDQRTALLAAIVFALTPSLLKWHFQVRGYSWYFLSIPILTMLFTSVASDRAPKQTMSFLFGLASGVSIWCLELAIPIVAAFWMLLILRRKLSLKNAAVVFGGCVVGYLPVVACNLMHHFNNWRYLLVESPGGGFQSLFHFSTYGRILFDEMP
Ga0208707_101718	Ga0208707_1017181	F063524	MADRSNFWKVVDRTKPSELRTFAETELRACQDYFLEIQSDSTLPPDEIITASERLTLIRSEIDLRHGDAKHRQTQRLARWAIGVGMVSIAVAIISGVAQCLA
Ga0208707_101888	Ga0208707_1018881	F077144	VARQRPIDRILVSENTLSLKECAFLIDLYDRYSGLTRCRDYNSRPLLDYYTLRDVDRKSANWVYRVTFRCKENIEAHF
Ga0208707_102026	Ga0208707_1020262	F067224	VAKSARTVWLLDDDPSVLKATSRLLTGWIQTVGDWIGKRPADVPTAAARKEKFEAKEVLREAERKDAIKVLKTELQRLTQENQELRTTVERLTWENKQAEVSISLLEQELHVSGGS
Ga0208707_102027	Ga0208707_1020271	F085324	RRARERGGGMSMFRKVVLGAALVGLVAVLRKSMPDLARYLKIRSM
Ga0208707_102198	Ga0208707_1021981	F018064	RQSTQERIQDTIFEMNKFVVDKNPMVGLAWRDISDAVQAKFKDVPEPARTKQIEDLTRQTYYVYIFLSLYARMDDLRSRGILSPNDEMILGWKRSWLPNLMTSELGRWMLENNLMEYYSEPMIKDLREAAGAIGSSPTPPASTP
Ga0208707_102327	Ga0208707_1023272	F058773	VSLVRPKDEGEHWVKLVLVTMAIWVLMFVTMAVIPSFWLYFADGTLKWTGKFTVPYGLGELVLPMQAVRDVIVVLWYGVVLTGFGLAVRAYNRRNPKTLPAGEEKREATGGYK
Ga0208707_102391	Ga0208707_1023911	F019044	MKSRVFLFILLSIANAFASDLDFTLVNQTARSFEGVYITDSNNK
Ga0208707_102447	Ga0208707_1024471	F000402	MEEHGDCTSGVCPGASANGETVSLYVPYNHPLLQLKRALPWEALAEVMTRHWRQAGKNVDGHPGLTWDVALYVPLMVLMVVKNLHARALEAYVAENVVARVFIGRQNAPRPQIRDHSNIARAYAALGKD
Ga0208707_102544	Ga0208707_1025441	F007810	ERWAASQSRIGISAATRRPTAALTMSDLSSDNRAITIALLTALIFVSLSLTQTMRGNDAREQVTRIVAQIQRADYEGEQAVMQRGYDDLKPFLEDKEFASRIRYWRAFAQWRRAINSFNDAVDPKELEQNLKLALDEFNIAMEKDPAFVDAKVGMISCLGYLAFMNRQDQARAKELV
Ga0208707_102620	Ga0208707_1026202	F020056	FSDESSDSTSTEEIIELAERLFKSRISSQEGPGRPEGRILPSEIFTVTRVTGKK
Ga0208707_102641	Ga0208707_1026411	F038375	KGIVILAAALVIALSDQAFARLGQTEDQVNALFGKPVDPGKPDSDGITTNMYKNPTGDYLAMVQFLKGHSVTESYARVDRHKLSQKELSIFLQGNSAGKEWKKDPRKLAWERSDHHATAWCETVAGRPTLLIRAK
Ga0208707_102647	Ga0208707_1026471	F027930	KIITTVVLALAATSAAHGAIGDNPFQLAARFQTKPIVIEQMTSRRIRVVYVEDGWISVVNLLDGISKAELMARADNGFVGYEDIKAQVTHYGGKFEMWKQDKPRNEDFFAWVRPDGRLFLAVGKTTLPDGKKYNWLFIFETPAWWAGRAEEVARGLNESKTHLWK