Basic Information | |
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IMG/M Taxon OID | 3300026673 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0053063 | Gp0055378 | Ga0208847 |
Sample Name | Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1116 (SPAdes) |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 8493578 |
Sequencing Scaffolds | 36 |
Novel Protein Genes | 38 |
Associated Families | 38 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
Not Available | 22 |
All Organisms → cellular organisms → Bacteria | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 5 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 2 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella multipartita | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha → Actinopolymorpha alba | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized |
Type | Environmental |
Taxonomy | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | grassland biome → land → fertilized soil |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
Location Information | ||||||||
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Location | Nunn, Colorado, USA | |||||||
Coordinates | Lat. (o) | 40.81667 | Long. (o) | -104.76667 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F005831 | Metagenome / Metatranscriptome | 389 | Y |
F005860 | Metagenome / Metatranscriptome | 388 | Y |
F006511 | Metagenome / Metatranscriptome | 371 | Y |
F007444 | Metagenome / Metatranscriptome | 351 | Y |
F009235 | Metagenome / Metatranscriptome | 321 | Y |
F009632 | Metagenome / Metatranscriptome | 315 | Y |
F010529 | Metagenome / Metatranscriptome | 302 | Y |
F012064 | Metagenome / Metatranscriptome | 284 | Y |
F012394 | Metagenome / Metatranscriptome | 281 | Y |
F013942 | Metagenome / Metatranscriptome | 267 | Y |
F015021 | Metagenome / Metatranscriptome | 258 | Y |
F015530 | Metagenome / Metatranscriptome | 254 | Y |
F017450 | Metagenome / Metatranscriptome | 240 | Y |
F020332 | Metagenome | 224 | Y |
F021935 | Metagenome / Metatranscriptome | 216 | Y |
F028934 | Metagenome / Metatranscriptome | 190 | Y |
F034237 | Metagenome / Metatranscriptome | 175 | N |
F036484 | Metagenome / Metatranscriptome | 170 | Y |
F036585 | Metagenome / Metatranscriptome | 169 | Y |
F036777 | Metagenome / Metatranscriptome | 169 | Y |
F037921 | Metagenome | 167 | Y |
F037926 | Metagenome / Metatranscriptome | 167 | Y |
F037928 | Metagenome / Metatranscriptome | 167 | Y |
F044139 | Metagenome / Metatranscriptome | 155 | Y |
F049469 | Metagenome / Metatranscriptome | 146 | N |
F052034 | Metagenome / Metatranscriptome | 143 | Y |
F053847 | Metagenome | 140 | Y |
F054653 | Metagenome | 139 | Y |
F056043 | Metagenome / Metatranscriptome | 138 | Y |
F060447 | Metagenome / Metatranscriptome | 133 | Y |
F064074 | Metagenome / Metatranscriptome | 129 | Y |
F067909 | Metagenome | 125 | Y |
F078358 | Metagenome / Metatranscriptome | 116 | Y |
F081733 | Metagenome | 114 | N |
F082892 | Metagenome / Metatranscriptome | 113 | Y |
F093830 | Metagenome / Metatranscriptome | 106 | Y |
F097657 | Metagenome / Metatranscriptome | 104 | N |
F103544 | Metagenome | 101 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0208847_100045 | Not Available | 2160 | Open in IMG/M |
Ga0208847_100154 | All Organisms → cellular organisms → Bacteria | 1570 | Open in IMG/M |
Ga0208847_100161 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 1551 | Open in IMG/M |
Ga0208847_100187 | Not Available | 1499 | Open in IMG/M |
Ga0208847_100192 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 1489 | Open in IMG/M |
Ga0208847_100290 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis | 1296 | Open in IMG/M |
Ga0208847_100366 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales | 1190 | Open in IMG/M |
Ga0208847_100369 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 1186 | Open in IMG/M |
Ga0208847_100601 | Not Available | 989 | Open in IMG/M |
Ga0208847_100631 | Not Available | 971 | Open in IMG/M |
Ga0208847_100844 | Not Available | 865 | Open in IMG/M |
Ga0208847_100988 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella multipartita | 818 | Open in IMG/M |
Ga0208847_101022 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 804 | Open in IMG/M |
Ga0208847_101125 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 775 | Open in IMG/M |
Ga0208847_101151 | Not Available | 768 | Open in IMG/M |
Ga0208847_101172 | Not Available | 762 | Open in IMG/M |
Ga0208847_101238 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 743 | Open in IMG/M |
Ga0208847_101374 | Not Available | 705 | Open in IMG/M |
Ga0208847_101661 | Not Available | 640 | Open in IMG/M |
Ga0208847_101748 | Not Available | 623 | Open in IMG/M |
Ga0208847_101752 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 623 | Open in IMG/M |
Ga0208847_101810 | Not Available | 615 | Open in IMG/M |
Ga0208847_102082 | Not Available | 578 | Open in IMG/M |
Ga0208847_102157 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 568 | Open in IMG/M |
Ga0208847_102182 | Not Available | 564 | Open in IMG/M |
Ga0208847_102196 | Not Available | 562 | Open in IMG/M |
Ga0208847_102321 | Not Available | 547 | Open in IMG/M |
Ga0208847_102465 | Not Available | 533 | Open in IMG/M |
Ga0208847_102544 | Not Available | 524 | Open in IMG/M |
Ga0208847_102551 | Not Available | 522 | Open in IMG/M |
Ga0208847_102558 | Not Available | 522 | Open in IMG/M |
Ga0208847_102576 | Not Available | 520 | Open in IMG/M |
Ga0208847_102634 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 514 | Open in IMG/M |
Ga0208847_102740 | Not Available | 506 | Open in IMG/M |
Ga0208847_102804 | Not Available | 501 | Open in IMG/M |
Ga0208847_102817 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha → Actinopolymorpha alba | 500 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0208847_100045 | Ga0208847_1000451 | F052034 | VAIKGKSKRSQGRPVRRPATGPRIQTVERRLPWYRAPAFPVTLAVIALLGTLVAAQNRVQEGWTRDDVRRFTADLRAQTDQLPSVIGTGTRELPGFPSAQELTTGKLEPKKLAVRASGWSAKLGQIQSRVQEITVGEPPAEAGTDGEPSNAVGGRDPMLTSVRDSYAAAIGVYFEAANIFQKAGEAPAGSPSARALVEQGMATTSAAG |
Ga0208847_100154 | Ga0208847_1001541 | F020332 | TAVGAGVHASVAEAVAAFVDYQPDEHVPDPERHQLYSSAYHRYREVYYALKPVFEKVET |
Ga0208847_100161 | Ga0208847_1001613 | F049469 | AEGELRLLAGDRPEEYGVDVLVAHRAGERRRSYRDAAHSGGQRATIAILLLLATMGTAEAADLLIMDEHIAHLDSTNIDHVAALMHALADRVQFVLATPTNAESLRLSWCDLQLAFLPRDPGRAYSPPIRLLSRLGVGDLEDRGVG |
Ga0208847_100187 | Ga0208847_1001873 | F009632 | MRWRRAATIGLTAFALLALAQPASAVTYVGIDDLTCDGATTMGTGMPERTRLDVALVDPASDRTLSRGRITTTAAGTFEWQAKVSLSGMRAVRAVVRTPGKATPMAWVEHSLARSCPLAYTGPNRTLPLVGVGLSSFTLGVLVLIAFAYQG |
Ga0208847_100192 | Ga0208847_1001921 | F060447 | MAAGDADPGPRLDAELLAAEVAESLDEFLDHMSVAEGIGAKLNRQLLGFLKTEVLPQANRAAEMGVDPTPLFAMVVRVLRTYADALQRPPSADGETTAWS |
Ga0208847_100290 | Ga0208847_1002901 | F037928 | PDVVTYRLPPVPGQPSSPPLLDGRLSYRPGTWLSVVDLQGLAPVAGDERYLVFLRNWAGWTLAGAARPGADGAVQVRSAAEPRPPTIYEVAVTRAVDDATSVPHGQPVLHWFDASLAPPRARQFDFARGA |
Ga0208847_100366 | Ga0208847_1003662 | F012394 | VGETSAATAREVEETRKQMEDKVAKLSERAPEEARKLMKRVAFGVLSAVMVLLARKLVDKLWERATGELPPTKVERE |
Ga0208847_100369 | Ga0208847_1003692 | F005831 | MTGSMHVADHQGDTIHTWDTADPTTVREIEEIFREAQATGRLVYRQTRDGTGEQVRLATWNPEEHTELFVAPRLAGG |
Ga0208847_100601 | Ga0208847_1006013 | F093830 | VSGYSRQEVARRAGVDPGYVDRLVELGILTPAAGDAFSPGDVLRARWLQSLEQ |
Ga0208847_100631 | Ga0208847_1006312 | F036585 | VQKELTLEEFYASDPQRAAIPEVLYGRLWREFAPVPTYRLAWVPTTGELYATELSEPDEAKDPVEVLGVLWSRPQVEACLAGWSERCGGQRSLLWARDQIASWRPLVEEAQVTLASPKPSRSPP |
Ga0208847_100844 | Ga0208847_1008441 | F036484 | VVLFTSAIVVGALLLLGAALHALLAKSLYSQQSSEAVVQVRSLTDQTQLDDVSSSDIRQVQRRLQDKLITGQGGPPTFKALVLRGRDGTESHSDPNLRFEHVPPGLAQRVEKDNELAYVYIRSPVGSGRLLVVGAPFPIAQSDVGIQQAYFFYPLNFQEETLAKLSNFLLIVGAGLLAAV |
Ga0208847_100988 | Ga0208847_1009881 | F017450 | MPTEKDPTEELQTQVLDGIRKSQEAVIDGMRTWAETIQQLVPGTTQAAVPRTDLPTPAEVVDSVFDFAAQLLNAQRELAHSVLGATTAIGESVQKETEKAAGTVKKSTKR |
Ga0208847_101022 | Ga0208847_1010222 | F028934 | LIIRLIIQTIGLYPSGAVWTESASNVSRLDPSGADQTDANHPTRNRK |
Ga0208847_101125 | Ga0208847_1011252 | F036777 | PSGDRLVLLSLEIWSDWFDLRFAVAYATPEPEGDLPRPWVVGRCEVSDRAGTEYRSWVSSSPAYGMVRVHQHTFVPAPPPGTEVLELRFLPPSDSSAELRPLVVSTVVL |
Ga0208847_101151 | Ga0208847_1011512 | F021935 | MPTSHGDLLTPTEREAAQLLVTLAWRLDGGQLVSTDQLLARLCGIPTNDVAMASIVLLRQVAHSVAPALQRPPIEILDHLRA |
Ga0208847_101172 | Ga0208847_1011721 | F053847 | LEGPPPEDRAVPKARPGAYWAGLVALAVGLAVTVVTLATRVTSIVQTILLAVPLVFIGIGLERVGRGTSRGSLRAVGAVLVAVAVVGPLVLSLSSPEGAVIDNFSQPVPSGAARAELRVSMGGGQLRVAPEAAGLYEAELRSPGLPSTQVTTAKDLAVLDLRSPAQRGMLARNRGNDWRIRLNTSLAWQVDVSAGAVTADLDLRQLNVRGVTVQSGVSRLAVRLGDPAAEVPVDLQLSTGLVDLYLPRTATVEV |
Ga0208847_101238 | Ga0208847_1012382 | F015021 | VATRFPDDDDLPREPDPPARATDVDKQDPATPDEIPEPEASEVESARLLANQARPQLGAEGFSDQRIDELASEFIASDIGEGLEEFLGWARAEGQLPQGSGEIF |
Ga0208847_101374 | Ga0208847_1013742 | F009235 | MAEQRTFRALGGVDQGSLPPAGEVADALRAEFDRVFALKASLRGEAEAGVSPTGRRTTAQDEAKLRTLVASVEGASRFAIRLRLLSPAQVRALWAEAMARGLYDGWDAGQSAYDRQSEGATSAPPDPPEPSPTGEA |
Ga0208847_101486 | Ga0208847_1014861 | F067909 | EQVDVQGRGVLNAYGRMSIRATAWLAKSSIERQRDMLRLSLFDALVGPGAAQSVGGWRARNADPLEAATKAALLGLIAWGVIRRPAWRNLTVAALLLIVATVTITRPYSTVSAATRPGVVVPNAMLTMVTRIAPDGAAGDQGDAVPTQRRLLTGYWRSFVAHPLSRMQTGTTVLAEAEPGKKASVLDALRRNVSAVNDWAVGHRGPERAFIATSALGYVLPFAVGL |
Ga0208847_101661 | Ga0208847_1016611 | F064074 | ATSRAPATTPPPPATVIKTETSVPQTCEDTAELADEVISRLTRNIRDNRLAEMLRDYTIASQACRREASP |
Ga0208847_101661 | Ga0208847_1016612 | F007444 | MRSKPLAKLLLVLAGLLLVVAPAARAAETLVLTCTVCTKLVVTGKDLPANSEVRVGVVDVKTGQETTGQFTVATDANGAFVKTIPMDLGEHPALESTVWKKDGSVLVVAAHTRFTAPCKPEDTLAFTGSHTPLLGGLGLALL |
Ga0208847_101748 | Ga0208847_1017481 | F054653 | MTTSHPAPSPTAPVSGSVLDGDPRVLIPLPEVAERLGISRWQAYKLARSGRLPTTRLGARDLHVPAAVLRRIEHEGLPPAPEGGEVA |
Ga0208847_101752 | Ga0208847_1017521 | F013942 | WLQFLLYLAAFACFLLAAFGARSRWAGRVNLIGLGLACWVFIPLVAALRRVS |
Ga0208847_101810 | Ga0208847_1018101 | F012064 | MRLRRIVAVLGLAAALSLPAAASAESKRHVGLHDMTCTSIMAMGKGLAPDAAVQLTLTDRDNGTTLAGQTVRTSAKGEFMAKLPARLNKVLSIRLTVSRPDGSKVAFADHVMAKGAPMCDLPFTGPSGGVALLLTGTTAIALGLVLLASAARYERVLALV |
Ga0208847_102082 | Ga0208847_1020822 | F015530 | MAESKAAWDKVGEDFRVLGRQIKQHYDQRPRPGTEMEEAPEGQQSQAGQGPPASDRRKVDDALEKLRDSLDQAFSALGDAVRDPQVGEQTKKAAGSLSDALNATFAEASERFRRR |
Ga0208847_102157 | Ga0208847_1021572 | F037926 | VLFPLGLMGMLAAGEWLERRTLAAEEVLPRRLRRMDSEPPEAVEAMVLEETAQVVAEYWSATGRQPPPAPQPSRNGNGRGRHLRRPAPGRAGRHERRR |
Ga0208847_102182 | Ga0208847_1021821 | F005860 | MPVEPPGPSTEQLAAWQALIERIRQGDRAEVLAWDEGAAAGPGATYQVLVTQQARQRLRGAPPLLAGSVAGIIAVLRVDPTEASMIFRRRRLGDAGWVVTFGAAGGLLTYWVLPAEELVVLLDLTWSG |
Ga0208847_102196 | Ga0208847_1021961 | F006511 | MVIHYPPARLRRNSDQPTAITDVLVATSGSSSPIGDIPLGTPTCSARSRQGIWALYPNGDQVVVVWPGGALAGPPAEVNRELDRMDDGQDDLDRGAVWAIRQFLTDPAAADVAPWSATRARTWSSPAEGYWLSGPTNQPGYPTPPPA |
Ga0208847_102321 | Ga0208847_1023212 | F044139 | VGFNATRRYRDKKTVDIALLVAAIVIVLALLAWVFAAGGN |
Ga0208847_102465 | Ga0208847_1024652 | F037921 | MLVSTQEASVHPLLLDELAAARIDELRRQASRERRDLPLLRPSPVARAARRSLQAFGFLLVGAGLRLATTGERQGPTGRGLM |
Ga0208847_102544 | Ga0208847_1025441 | F010529 | HHRIKCLICGRPVDHRVVFMTNDARVLHAGCIPDHVKVPTPVLLQAIRRLERMVERSRTNDRYDPDPEQPGPAATALEPDPQDPGPA |
Ga0208847_102551 | Ga0208847_1025511 | F078358 | MAKHTAGSYHRTTIYLTDEQWRWLSRLAAQARLDDLPLSASDVIRLAVARLHDQLSETELRKALVAHVRSEAERYPGRARRGLPEG |
Ga0208847_102558 | Ga0208847_1025581 | F103544 | PPTPYRWVNPPPEQAANNKPPASTRFTVELTAQGSRLGAFSTSDGQINLVLSEGAIPARPGQTGVEVAVDPIDPATLGPAPSGLIVAGNAYRIQASYRPSGRKVETLGGQSSVGLVYPLLATAVADPGGHVVLSSAEGQAWEQLQSTDTPGTHQVSAGLNRTGYVEVGVAPAS |
Ga0208847_102576 | Ga0208847_1025761 | F034237 | MSIQPLDIERWPTTGVDLETRRRRILATLTALGRPREVEQFQRALAAATRAAADSQDYAGLEGVVQGWYLHVLALRTVPGWADRWEALRREPPALVPGDAKSLEDVLADLDL |
Ga0208847_102634 | Ga0208847_1026342 | F097657 | LRRLLDRRQLAEAFPGALVVTVQVESEADGQAAQLAAQPVTSLADEWDRYLASVPIEGYDRDRLAGMGRAFLQQVEEEAR |
Ga0208847_102740 | Ga0208847_1027401 | F082892 | IAIILALLTVNGLPGTNRAATTTTSVDQRAIADGEQALADWGEFAVTNDLGQVKDTFWANGPQYKELAREAKARKKPIGPPPYTVTMSGVQVLKPRPDQRVLRGKVQMTRPGERPQTFNWDILMQVDQAAGGQWRLWTVRNTA |
Ga0208847_102804 | Ga0208847_1028041 | F056043 | EPAPKAEQPATRTKAKPEARRPAAGRAQSPLLKKAQVGDVDRKGRVYERPMLLHPRIALYIYFIVLGVGLISLLRRDPTLQAVGYGAFAVGMLVIADSKTTWLRALPFIILAAALAAGAVILAVSVG |
Ga0208847_102817 | Ga0208847_1028171 | F081733 | ALRYDTEAAARRDRDRPELAAWQASAERHLTGPGRWYECPVVHTMKDGDAGEAGFVRVVQGRLADPVRLAAMRDEVERTLRARAPHVLGVTVAEHADGIGFTELTYLTSERETRAADRQMPVEMAVQLGTVRSYVEALEEVELRRPLLASPAPVVVA |
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