NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026673

3300026673: Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1116 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300026673 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0053063 | Gp0055378 | Ga0208847
Sample NameGrasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1116 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size8493578
Sequencing Scaffolds36
Novel Protein Genes38
Associated Families38

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available22
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella multipartita1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha → Actinopolymorpha alba1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Alternative Ecosystem Assignments
Environment Ontology (ENVO)grassland biomelandfertilized soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationNunn, Colorado, USA
CoordinatesLat. (o)40.81667Long. (o)-104.76667Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005831Metagenome / Metatranscriptome389Y
F005860Metagenome / Metatranscriptome388Y
F006511Metagenome / Metatranscriptome371Y
F007444Metagenome / Metatranscriptome351Y
F009235Metagenome / Metatranscriptome321Y
F009632Metagenome / Metatranscriptome315Y
F010529Metagenome / Metatranscriptome302Y
F012064Metagenome / Metatranscriptome284Y
F012394Metagenome / Metatranscriptome281Y
F013942Metagenome / Metatranscriptome267Y
F015021Metagenome / Metatranscriptome258Y
F015530Metagenome / Metatranscriptome254Y
F017450Metagenome / Metatranscriptome240Y
F020332Metagenome224Y
F021935Metagenome / Metatranscriptome216Y
F028934Metagenome / Metatranscriptome190Y
F034237Metagenome / Metatranscriptome175N
F036484Metagenome / Metatranscriptome170Y
F036585Metagenome / Metatranscriptome169Y
F036777Metagenome / Metatranscriptome169Y
F037921Metagenome167Y
F037926Metagenome / Metatranscriptome167Y
F037928Metagenome / Metatranscriptome167Y
F044139Metagenome / Metatranscriptome155Y
F049469Metagenome / Metatranscriptome146N
F052034Metagenome / Metatranscriptome143Y
F053847Metagenome140Y
F054653Metagenome139Y
F056043Metagenome / Metatranscriptome138Y
F060447Metagenome / Metatranscriptome133Y
F064074Metagenome / Metatranscriptome129Y
F067909Metagenome125Y
F078358Metagenome / Metatranscriptome116Y
F081733Metagenome114N
F082892Metagenome / Metatranscriptome113Y
F093830Metagenome / Metatranscriptome106Y
F097657Metagenome / Metatranscriptome104N
F103544Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0208847_100045Not Available2160Open in IMG/M
Ga0208847_100154All Organisms → cellular organisms → Bacteria1570Open in IMG/M
Ga0208847_100161All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1551Open in IMG/M
Ga0208847_100187Not Available1499Open in IMG/M
Ga0208847_100192All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1489Open in IMG/M
Ga0208847_100290All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis1296Open in IMG/M
Ga0208847_100366All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales1190Open in IMG/M
Ga0208847_100369All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1186Open in IMG/M
Ga0208847_100601Not Available989Open in IMG/M
Ga0208847_100631Not Available971Open in IMG/M
Ga0208847_100844Not Available865Open in IMG/M
Ga0208847_100988All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella multipartita818Open in IMG/M
Ga0208847_101022All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium804Open in IMG/M
Ga0208847_101125All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia775Open in IMG/M
Ga0208847_101151Not Available768Open in IMG/M
Ga0208847_101172Not Available762Open in IMG/M
Ga0208847_101238All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria743Open in IMG/M
Ga0208847_101374Not Available705Open in IMG/M
Ga0208847_101661Not Available640Open in IMG/M
Ga0208847_101748Not Available623Open in IMG/M
Ga0208847_101752All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria623Open in IMG/M
Ga0208847_101810Not Available615Open in IMG/M
Ga0208847_102082Not Available578Open in IMG/M
Ga0208847_102157All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium568Open in IMG/M
Ga0208847_102182Not Available564Open in IMG/M
Ga0208847_102196Not Available562Open in IMG/M
Ga0208847_102321Not Available547Open in IMG/M
Ga0208847_102465Not Available533Open in IMG/M
Ga0208847_102544Not Available524Open in IMG/M
Ga0208847_102551Not Available522Open in IMG/M
Ga0208847_102558Not Available522Open in IMG/M
Ga0208847_102576Not Available520Open in IMG/M
Ga0208847_102634All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria514Open in IMG/M
Ga0208847_102740Not Available506Open in IMG/M
Ga0208847_102804Not Available501Open in IMG/M
Ga0208847_102817All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha → Actinopolymorpha alba500Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0208847_100045Ga0208847_1000451F052034VAIKGKSKRSQGRPVRRPATGPRIQTVERRLPWYRAPAFPVTLAVIALLGTLVAAQNRVQEGWTRDDVRRFTADLRAQTDQLPSVIGTGTRELPGFPSAQELTTGKLEPKKLAVRASGWSAKLGQIQSRVQEITVGEPPAEAGTDGEPSNAVGGRDPMLTSVRDSYAAAIGVYFEAANIFQKAGEAPAGSPSARALVEQGMATTSAAG
Ga0208847_100154Ga0208847_1001541F020332TAVGAGVHASVAEAVAAFVDYQPDEHVPDPERHQLYSSAYHRYREVYYALKPVFEKVET
Ga0208847_100161Ga0208847_1001613F049469AEGELRLLAGDRPEEYGVDVLVAHRAGERRRSYRDAAHSGGQRATIAILLLLATMGTAEAADLLIMDEHIAHLDSTNIDHVAALMHALADRVQFVLATPTNAESLRLSWCDLQLAFLPRDPGRAYSPPIRLLSRLGVGDLEDRGVG
Ga0208847_100187Ga0208847_1001873F009632MRWRRAATIGLTAFALLALAQPASAVTYVGIDDLTCDGATTMGTGMPERTRLDVALVDPASDRTLSRGRITTTAAGTFEWQAKVSLSGMRAVRAVVRTPGKATPMAWVEHSLARSCPLAYTGPNRTLPLVGVGLSSFTLGVLVLIAFAYQG
Ga0208847_100192Ga0208847_1001921F060447MAAGDADPGPRLDAELLAAEVAESLDEFLDHMSVAEGIGAKLNRQLLGFLKTEVLPQANRAAEMGVDPTPLFAMVVRVLRTYADALQRPPSADGETTAWS
Ga0208847_100290Ga0208847_1002901F037928PDVVTYRLPPVPGQPSSPPLLDGRLSYRPGTWLSVVDLQGLAPVAGDERYLVFLRNWAGWTLAGAARPGADGAVQVRSAAEPRPPTIYEVAVTRAVDDATSVPHGQPVLHWFDASLAPPRARQFDFARGA
Ga0208847_100366Ga0208847_1003662F012394VGETSAATAREVEETRKQMEDKVAKLSERAPEEARKLMKRVAFGVLSAVMVLLARKLVDKLWERATGELPPTKVERE
Ga0208847_100369Ga0208847_1003692F005831MTGSMHVADHQGDTIHTWDTADPTTVREIEEIFREAQATGRLVYRQTRDGTGEQVRLATWNPEEHTELFVAPRLAGG
Ga0208847_100601Ga0208847_1006013F093830VSGYSRQEVARRAGVDPGYVDRLVELGILTPAAGDAFSPGDVLRARWLQSLEQ
Ga0208847_100631Ga0208847_1006312F036585VQKELTLEEFYASDPQRAAIPEVLYGRLWREFAPVPTYRLAWVPTTGELYATELSEPDEAKDPVEVLGVLWSRPQVEACLAGWSERCGGQRSLLWARDQIASWRPLVEEAQVTLASPKPSRSPP
Ga0208847_100844Ga0208847_1008441F036484VVLFTSAIVVGALLLLGAALHALLAKSLYSQQSSEAVVQVRSLTDQTQLDDVSSSDIRQVQRRLQDKLITGQGGPPTFKALVLRGRDGTESHSDPNLRFEHVPPGLAQRVEKDNELAYVYIRSPVGSGRLLVVGAPFPIAQSDVGIQQAYFFYPLNFQEETLAKLSNFLLIVGAGLLAAV
Ga0208847_100988Ga0208847_1009881F017450MPTEKDPTEELQTQVLDGIRKSQEAVIDGMRTWAETIQQLVPGTTQAAVPRTDLPTPAEVVDSVFDFAAQLLNAQRELAHSVLGATTAIGESVQKETEKAAGTVKKSTKR
Ga0208847_101022Ga0208847_1010222F028934LIIRLIIQTIGLYPSGAVWTESASNVSRLDPSGADQTDANHPTRNRK
Ga0208847_101125Ga0208847_1011252F036777PSGDRLVLLSLEIWSDWFDLRFAVAYATPEPEGDLPRPWVVGRCEVSDRAGTEYRSWVSSSPAYGMVRVHQHTFVPAPPPGTEVLELRFLPPSDSSAELRPLVVSTVVL
Ga0208847_101151Ga0208847_1011512F021935MPTSHGDLLTPTEREAAQLLVTLAWRLDGGQLVSTDQLLARLCGIPTNDVAMASIVLLRQVAHSVAPALQRPPIEILDHLRA
Ga0208847_101172Ga0208847_1011721F053847LEGPPPEDRAVPKARPGAYWAGLVALAVGLAVTVVTLATRVTSIVQTILLAVPLVFIGIGLERVGRGTSRGSLRAVGAVLVAVAVVGPLVLSLSSPEGAVIDNFSQPVPSGAARAELRVSMGGGQLRVAPEAAGLYEAELRSPGLPSTQVTTAKDLAVLDLRSPAQRGMLARNRGNDWRIRLNTSLAWQVDVSAGAVTADLDLRQLNVRGVTVQSGVSRLAVRLGDPAAEVPVDLQLSTGLVDLYLPRTATVEV
Ga0208847_101238Ga0208847_1012382F015021VATRFPDDDDLPREPDPPARATDVDKQDPATPDEIPEPEASEVESARLLANQARPQLGAEGFSDQRIDELASEFIASDIGEGLEEFLGWARAEGQLPQGSGEIF
Ga0208847_101374Ga0208847_1013742F009235MAEQRTFRALGGVDQGSLPPAGEVADALRAEFDRVFALKASLRGEAEAGVSPTGRRTTAQDEAKLRTLVASVEGASRFAIRLRLLSPAQVRALWAEAMARGLYDGWDAGQSAYDRQSEGATSAPPDPPEPSPTGEA
Ga0208847_101486Ga0208847_1014861F067909EQVDVQGRGVLNAYGRMSIRATAWLAKSSIERQRDMLRLSLFDALVGPGAAQSVGGWRARNADPLEAATKAALLGLIAWGVIRRPAWRNLTVAALLLIVATVTITRPYSTVSAATRPGVVVPNAMLTMVTRIAPDGAAGDQGDAVPTQRRLLTGYWRSFVAHPLSRMQTGTTVLAEAEPGKKASVLDALRRNVSAVNDWAVGHRGPERAFIATSALGYVLPFAVGL
Ga0208847_101661Ga0208847_1016611F064074ATSRAPATTPPPPATVIKTETSVPQTCEDTAELADEVISRLTRNIRDNRLAEMLRDYTIASQACRREASP
Ga0208847_101661Ga0208847_1016612F007444MRSKPLAKLLLVLAGLLLVVAPAARAAETLVLTCTVCTKLVVTGKDLPANSEVRVGVVDVKTGQETTGQFTVATDANGAFVKTIPMDLGEHPALESTVWKKDGSVLVVAAHTRFTAPCKPEDTLAFTGSHTPLLGGLGLALL
Ga0208847_101748Ga0208847_1017481F054653MTTSHPAPSPTAPVSGSVLDGDPRVLIPLPEVAERLGISRWQAYKLARSGRLPTTRLGARDLHVPAAVLRRIEHEGLPPAPEGGEVA
Ga0208847_101752Ga0208847_1017521F013942WLQFLLYLAAFACFLLAAFGARSRWAGRVNLIGLGLACWVFIPLVAALRRVS
Ga0208847_101810Ga0208847_1018101F012064MRLRRIVAVLGLAAALSLPAAASAESKRHVGLHDMTCTSIMAMGKGLAPDAAVQLTLTDRDNGTTLAGQTVRTSAKGEFMAKLPARLNKVLSIRLTVSRPDGSKVAFADHVMAKGAPMCDLPFTGPSGGVALLLTGTTAIALGLVLLASAARYERVLALV
Ga0208847_102082Ga0208847_1020822F015530MAESKAAWDKVGEDFRVLGRQIKQHYDQRPRPGTEMEEAPEGQQSQAGQGPPASDRRKVDDALEKLRDSLDQAFSALGDAVRDPQVGEQTKKAAGSLSDALNATFAEASERFRRR
Ga0208847_102157Ga0208847_1021572F037926VLFPLGLMGMLAAGEWLERRTLAAEEVLPRRLRRMDSEPPEAVEAMVLEETAQVVAEYWSATGRQPPPAPQPSRNGNGRGRHLRRPAPGRAGRHERRR
Ga0208847_102182Ga0208847_1021821F005860MPVEPPGPSTEQLAAWQALIERIRQGDRAEVLAWDEGAAAGPGATYQVLVTQQARQRLRGAPPLLAGSVAGIIAVLRVDPTEASMIFRRRRLGDAGWVVTFGAAGGLLTYWVLPAEELVVLLDLTWSG
Ga0208847_102196Ga0208847_1021961F006511MVIHYPPARLRRNSDQPTAITDVLVATSGSSSPIGDIPLGTPTCSARSRQGIWALYPNGDQVVVVWPGGALAGPPAEVNRELDRMDDGQDDLDRGAVWAIRQFLTDPAAADVAPWSATRARTWSSPAEGYWLSGPTNQPGYPTPPPA
Ga0208847_102321Ga0208847_1023212F044139VGFNATRRYRDKKTVDIALLVAAIVIVLALLAWVFAAGGN
Ga0208847_102465Ga0208847_1024652F037921MLVSTQEASVHPLLLDELAAARIDELRRQASRERRDLPLLRPSPVARAARRSLQAFGFLLVGAGLRLATTGERQGPTGRGLM
Ga0208847_102544Ga0208847_1025441F010529HHRIKCLICGRPVDHRVVFMTNDARVLHAGCIPDHVKVPTPVLLQAIRRLERMVERSRTNDRYDPDPEQPGPAATALEPDPQDPGPA
Ga0208847_102551Ga0208847_1025511F078358MAKHTAGSYHRTTIYLTDEQWRWLSRLAAQARLDDLPLSASDVIRLAVARLHDQLSETELRKALVAHVRSEAERYPGRARRGLPEG
Ga0208847_102558Ga0208847_1025581F103544PPTPYRWVNPPPEQAANNKPPASTRFTVELTAQGSRLGAFSTSDGQINLVLSEGAIPARPGQTGVEVAVDPIDPATLGPAPSGLIVAGNAYRIQASYRPSGRKVETLGGQSSVGLVYPLLATAVADPGGHVVLSSAEGQAWEQLQSTDTPGTHQVSAGLNRTGYVEVGVAPAS
Ga0208847_102576Ga0208847_1025761F034237MSIQPLDIERWPTTGVDLETRRRRILATLTALGRPREVEQFQRALAAATRAAADSQDYAGLEGVVQGWYLHVLALRTVPGWADRWEALRREPPALVPGDAKSLEDVLADLDL
Ga0208847_102634Ga0208847_1026342F097657LRRLLDRRQLAEAFPGALVVTVQVESEADGQAAQLAAQPVTSLADEWDRYLASVPIEGYDRDRLAGMGRAFLQQVEEEAR
Ga0208847_102740Ga0208847_1027401F082892IAIILALLTVNGLPGTNRAATTTTSVDQRAIADGEQALADWGEFAVTNDLGQVKDTFWANGPQYKELAREAKARKKPIGPPPYTVTMSGVQVLKPRPDQRVLRGKVQMTRPGERPQTFNWDILMQVDQAAGGQWRLWTVRNTA
Ga0208847_102804Ga0208847_1028041F056043EPAPKAEQPATRTKAKPEARRPAAGRAQSPLLKKAQVGDVDRKGRVYERPMLLHPRIALYIYFIVLGVGLISLLRRDPTLQAVGYGAFAVGMLVIADSKTTWLRALPFIILAAALAAGAVILAVSVG
Ga0208847_102817Ga0208847_1028171F081733ALRYDTEAAARRDRDRPELAAWQASAERHLTGPGRWYECPVVHTMKDGDAGEAGFVRVVQGRLADPVRLAAMRDEVERTLRARAPHVLGVTVAEHADGIGFTELTYLTSERETRAADRQMPVEMAVQLGTVRSYVEALEEVELRRPLLASPAPVVVA

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