Sample 3300026656

Basic Information
IMG/M Taxon OID	3300026656 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0053063 \| Gp0054782 \| Ga0208578
Sample Name	Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN577 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300026656 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0053063 | Gp0054782 | Ga0208578

Sample Name

Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN577 (SPAdes)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	6643647
Sequencing Scaffolds	25
Novel Protein Genes	28
Associated Families	28

Dataset Contents

Total Genome Size

6643647

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	11
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	5
Not Available	4
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia

Not Available

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Ecosystem Assignment (GOLD)

Name

Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	grassland biome → land → fertilized soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

grassland biome → land → fertilized soil

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Manhattan, Kansas, USA
Coordinates	Lat. (^o)	39.070856	Long. (^o)	-96.582821	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Manhattan, Kansas, USA

Coordinates

Lat. (^o)

39.070856

Long. (^o)

-96.582821

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F000303	Metagenome / Metatranscriptome	1337	Y
F001584	Metagenome / Metatranscriptome	668	Y
F001757	Metagenome / Metatranscriptome	641	N
F001947	Metagenome / Metatranscriptome	613	Y
F002517	Metagenome	552	Y
F004992	Metagenome / Metatranscriptome	416	Y
F006477	Metagenome / Metatranscriptome	372	Y
F007444	Metagenome / Metatranscriptome	351	Y
F012145	Metagenome	283	Y
F012252	Metagenome / Metatranscriptome	282	Y

Scaffold	Taxonomy	Length	IMG/M Link
Ga0208578_100043	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1540	Open in IMG/M
Ga0208578_100079	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1312	Open in IMG/M
Ga0208578_100104	All Organisms → cellular organisms → Bacteria	1236	Open in IMG/M
Ga0208578_100241	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1028	Open in IMG/M
Ga0208578_100342	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	925	Open in IMG/M
Ga0208578_100378	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	899	Open in IMG/M
Ga0208578_100501	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	835	Open in IMG/M
Ga0208578_100532	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	817	Open in IMG/M
Ga0208578_100648	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	770	Open in IMG/M
Ga0208578_100703	Not Available	750	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0208578_100043

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

1540

Open in IMG/M

Ga0208578_100079

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

1312

Open in IMG/M

Ga0208578_100104

All Organisms → cellular organisms → Bacteria

1236

Open in IMG/M

Ga0208578_100241

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia

1028

Open in IMG/M

Ga0208578_100342

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia

925

Open in IMG/M

Ga0208578_100378

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

899

Open in IMG/M

Ga0208578_100501

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

835

Open in IMG/M

Ga0208578_100532

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

817

Open in IMG/M

Ga0208578_100648

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

770

Open in IMG/M

Ga0208578_100703

Not Available

750

Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208578_100043	Ga0208578_1000431	F085295	MNGLSAQGLADLAGVTEAEIRRLVDLGILVARDGAGPFLETDVQKVRLATACEQAGLPMDGIAAAVQQGRLSFAFLEAAPYRRWAVRSARTYRQVSQEAGVPLELLGSFLEAIGFARMAPDEPIREDELEVVPLLQLGLSSGILDQVWSTRLGRGYAE
Ga0208578_100079	Ga0208578_1000791	F024523	RLESNEEVAEVCNLIHGAGYDHPFQGISPGYVPEKDWLSFLKYVKHGPNIDPEQGRDYIDAADRWRQDHGYPLPPDDAGYVSLVERTLLR
Ga0208578_100104	Ga0208578_1001041	F077953	MRTLIHAGLYAFGGAAWTFLALRIQEHFFWPENLTPRQKQRLDSAKWWLTLMGAIAGLLVSA
Ga0208578_100241	Ga0208578_1002413	F019013	QDESVEKRLSDLEKRVTALEKASPLSSPLSAASPTPASATKSPLELVAWDARRVRGEDSYDKYEISLTLKNNSDKDIKFIDATVQFADLLGSHIYDITFNPDHLIPAEQSITDTGQYPINQLMPEQARLAQMKKEDVKATLVVSKLVFTDNSIGQYAP
Ga0208578_100342	Ga0208578_1003422	F063914	RGIEFILEIGILLFGTVLYLKRNSAIARKIGIIIFVAALVLIQTSNTFVRRPPTSDNAFAITALVFYTVFAIIAFLLEKRRAISS
Ga0208578_100378	Ga0208578_1003781	F012145	MANSLEKPSSTAVRQIRPPPLSQHMRELASRPGAWLVVARNMIPVVGIYAFGWSAAVSVFNYWFDGLTALAAIVAALIPRALRETQSKKDHATLV
Ga0208578_100501	Ga0208578_1005011	F002517	VGPNGEKIVSETVRMLSQLPTLGAPRLVTLRYSDIGGKEEDARERKSGLRNPAYVHGIVVKMGAQQDFSFFDRFEELLFDRIGTPPRNSAANVEQIRQSTQERIQDTIFEMNKFVVDKNPMVGLAWKDISDAVQAKFKDVPEPARTKQIEDLTRQTYYVYIFLSLYARMDDLRSRGILSPNDEMILGWKRSWLPNLMTSELGRWMLENNLMEYYSEPMIKDLREAAGATGSSPTPPANTR
Ga0208578_100532	Ga0208578_1005321	F049535	MRRHTADSRASTKSIHKSARSLRRLASLLSTFAVVAGVQRQTSRSIKPRERDLRCLRLFFGPVFNEANEPSSTCRLRFQR
Ga0208578_100648	Ga0208578_1006482	F001757	MMRVLKRLQDKATTGAGKKLVLPEPRRVRFLIRGEGPVSAGAVTIECCPESTKAGKFWMELATIAVPADYGLAQYYTEEASGLFRARISRPVSNGTVTVTPLVSRGRPDRPDRTKVV
Ga0208578_100703	Ga0208578_1007031	F018755	MTIYPGAGYGEHRRADAQTSCDSVGLSDPGDHRTEPLLITGNKTRDAALGEPRIRAGEIIGWRVWNLCNGLLCSVFVAYTWHPGVFERSSSKRCGYHNPGYHAFRDIEQAERQVSTFAAYKAWPCVIGSVAMWGEVIEHQHGWRSEYAAVRSITKITGDRDFSTKQQLLLDLREKYGCALVTEL
Ga0208578_100749	Ga0208578_1007492	F036823	MKMKSLKILSAITIALFVLGTTLYAQGTDSRIGSIARERVEHGATQATAITKAEAEKKYPPPANG
Ga0208578_100990	Ga0208578_1009901	F092006	VKITSTRAAFARPGPGVIPFPDVVAPMQPSDSLPPSATTPVPLAAAYLDADACSVPREADDTCARLRAVRRRRVTGSPQDRDVSRKGEGLPGYGAVLFIRAMVEHPAGYGPLLAHHTEKPLLPSGKSGPWASGKDIGFGAACPMARTFACLRIAEAISGPVARLATGSGGLTLSRAGFAPAGRQTTFHGGIVSSSPN
Ga0208578_101185	Ga0208578_1011851	F001584	MWSILSGRGLTQPIEYGVTPPGFTTMIQPQKLIPGRVYTGFATDGHGGSSRVTFGFDKNGRMTFPDSFDE
Ga0208578_101326	Ga0208578_1013261	F012252	MKTYSYNSRRGLVLMTACLLFFSTYAAGQAMSSDAQSRRAGAGGFTVVRPVEGAARLIIRRDPALGNYLIAHLRVDGVTVAAIGYGRTYEGFLRPGRHVLSLLPTPNPNWRNAPGMILDVRSGETYNFTAIGDSGYLILLPPEVAQERPRGR
Ga0208578_101327	Ga0208578_1013271	F064074	DCLEAAQLADEVISRLNRNNRDNRLALALRDYTIASQACRREASP
Ga0208578_101327	Ga0208578_1013272	F007444	MRSKPLAKLLLVLAGLLLVVAPAARAAETLVLTCTVCTKLVVTGKDLPANSEVRVGVVDVKTGQETTGQFTVATDANGAFVKTIPMDLGEHPALESTVWKKDGSVLVVAAHTRFTAPCKPEDTLAFTGSHTPLLGGLGLALLAAGGLLVRGSRRRAYHPAH
Ga0208578_101344	Ga0208578_1013441	F019873	TKRFQSNSKRTLRIFRRSRRRHDPMLVLNMALFNFTDGWNRVLSRDQYARFSV
Ga0208578_101349	Ga0208578_1013491	F016035	MKQLIGLVHLSALTALYVALYGAHRQTQATEATHNRYPKKPDRQAELEGELVLLGLDGTVIAREVNLSPHGM
Ga0208578_101732	Ga0208578_1017321	F022950	VWPHRNGASVGLTATFSQIADEFLACVKLRARRLATIEIAHQTNAQRNVVQIITVHVPAVDLTAPAIAHFNLAVSSGCSVPDHEMIGETILHPAHTPMVIIEDARVALPRAAIM
Ga0208578_101835	Ga0208578_1018351	F036500	MPDEFRNLRIVHNRLSSQQLFRILNLRGWSERKLAGRSGIVPSVVSAHLSGKRAIRSHHLAAYLRVLDRPERAMFLDAWLRDNLDDELIADLLDGTKTDSKPSLQENQRRMLDWWATAIASDSALAKIFSRFSTKAGFKFPSVLLLPVSTAAAQLQSWLLEKASGIWYLVRCLCSRV
Ga0208578_101840	Ga0208578_1018402	F024391	MQSGFQNTWHFTAKCGFTLLLFQWCGCAHLASVKERPARLPARLPAEEPLESAKKYLTAAEHEQPLPALGHDLLAAKIS
Ga0208578_101841	Ga0208578_1018411	F016050	MDIQLDANVENQDRAKCGKNEAGGMKSFVCRMRKHVGNRAAYDRPDDAERDCPENRHVHVHHWIAE
Ga0208578_101886	Ga0208578_1018861	F034864	MRAEGFLLTIAQAPAYIPGGAGSFWKLIGWLLLVIGFLIALWLISAGLRWIIEKIAAAFRKK
Ga0208578_102089	Ga0208578_1020891	F001947	VSGRKTRRPGEIAIPPGSGFGKAHRCTCWPRPDNSSPCTPQTCDWRCRACRAYGRPFYSRDDLQYLEHGTGSLAAELARLWRAKGAMKGRPAQEGVGDELDGWRALPRGEAGLAARRRHSRTVTDLYYPGLQDHPPGRDKPNDG
Ga0208578_102200	Ga0208578_1022001	F000303	HVFGVFKSKLQLIHVSLDVTSLAIEELPTVIKEDVEEYLANNPTSAAARLRPRMGMAGDDIWLAFIGREVRRGASGLGNTPREALDDFNRNFMEPLISRNGSEPH
Ga0208578_102265	Ga0208578_1022651	F006477	MTVLIPLIVAVALGLAFVAYKHPAAYRVMFIFALPVLVVGGFLVLAIKVGDLNGSIKSVYHELPNIRKYALSDQLPYQIGRLYNVGQFLKVFLIYYISGFAYLVFLLFLRDILDLAKDRHHTPT
Ga0208578_102304	Ga0208578_1023042	F086244	MGYFKTNWRRTTLFLGGWTLVSVIFAAISYAAAIGENNKEFGFVSALRLNLVQFYLWAI
Ga0208578_102377	Ga0208578_1023771	F004992	MSNETPAAIDPDMFAAVFSQNWDNARHIKSERISFMNAYSVICAGVLALLQSVQASDLIRIALLFFMTLFSLIGLLTSLRLKGELEECLAKIEAMSVQARVNDFVALGQLEGRSSRYPRFRWIFPIFYAMTTVGFITL

Showing 1 to 28 of 28 entries

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026656: Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN577 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences