Sample 3300026439

Basic Information
IMG/M Taxon OID	3300026439 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133460 \| Gp0294650 \| Ga0256361
Sample Name	Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Law_RepB_8d (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Law_RepB_8d (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	146473470
Sequencing Scaffolds	44
Novel Protein Genes	47
Associated Families	40

Dataset Contents

Total Genome Size

146473470

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium LSUCC0115	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2
Not Available	25
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3
All Organisms → cellular organisms → Eukaryota → Cryptophyceae	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	1
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Lautropia → unclassified Lautropia → Lautropia sp.	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium LSUCC0115

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

Not Available

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

All Organisms → cellular organisms → Eukaryota → Cryptophyceae

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia

All Organisms → cellular organisms → Eukaryota

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila

All Organisms → cellular organisms → Bacteria → Terrabacteria group

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Lautropia → unclassified Lautropia → Lautropia sp.

Ecosystem Assignment (GOLD)
Name	Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Ecosystem Assignment (GOLD)

Name

Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Type

Environmental

Taxonomy

Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater river biome → river → river water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

freshwater river biome → river → river water

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Louisiana
Coordinates	Lat. (^o)	29.8571	Long. (^o)	-89.9778	Alt. (m)	N/A	Depth (m)	5
Location on Map

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Location Information

Location

USA: Louisiana

Coordinates

Lat. (^o)

29.8571

Long. (^o)

-89.9778

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000344	Metagenome / Metatranscriptome	1257	Y
F003488	Metagenome / Metatranscriptome	484	Y
F004916	Metagenome / Metatranscriptome	418	Y
F007472	Metagenome / Metatranscriptome	350	N
F016245	Metagenome / Metatranscriptome	248	N
F019472	Metagenome / Metatranscriptome	229	Y
F023352	Metagenome / Metatranscriptome	210	Y
F023494	Metagenome / Metatranscriptome	210	Y
F025755	Metagenome / Metatranscriptome	200	Y
F030134	Metagenome / Metatranscriptome	186	Y
F032540	Metagenome / Metatranscriptome	179	N
F032913	Metagenome / Metatranscriptome	178	Y
F035285	Metagenome / Metatranscriptome	172	N
F042297	Metagenome / Metatranscriptome	158	Y
F042749	Metagenome / Metatranscriptome	157	N
F044315	Metagenome / Metatranscriptome	154	N
F046955	Metagenome / Metatranscriptome	150	Y
F047008	Metagenome / Metatranscriptome	150	N
F051950	Metagenome / Metatranscriptome	143	Y
F052593	Metagenome / Metatranscriptome	142	Y
F059886	Metagenome / Metatranscriptome	133	Y
F059955	Metagenome / Metatranscriptome	133	Y
F061789	Metagenome / Metatranscriptome	131	Y
F063376	Metagenome / Metatranscriptome	129	Y
F067419	Metagenome / Metatranscriptome	125	N
F067528	Metagenome / Metatranscriptome	125	Y
F072383	Metagenome / Metatranscriptome	121	Y
F076149	Metagenome / Metatranscriptome	118	N
F078620	Metagenome / Metatranscriptome	116	N
F079635	Metagenome / Metatranscriptome	115	N
F080126	Metagenome / Metatranscriptome	115	Y
F081065	Metagenome / Metatranscriptome	114	Y
F082151	Metagenome / Metatranscriptome	113	Y
F087401	Metagenome / Metatranscriptome	110	Y
F095362	Metagenome / Metatranscriptome	105	Y
F099393	Metagenome / Metatranscriptome	103	N
F100451	Metagenome / Metatranscriptome	102	N
F101143	Metagenome / Metatranscriptome	102	Y
F101271	Metagenome / Metatranscriptome	102	N
F102620	Metagenome / Metatranscriptome	101	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0256361_1002660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium LSUCC0115	2924	Open in IMG/M
Ga0256361_1014255	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1359	Open in IMG/M
Ga0256361_1018478	Not Available	1191	Open in IMG/M
Ga0256361_1022386	Not Available	1079	Open in IMG/M
Ga0256361_1022511	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1076	Open in IMG/M
Ga0256361_1023024	Not Available	1064	Open in IMG/M
Ga0256361_1027841	Not Available	962	Open in IMG/M
Ga0256361_1028998	Not Available	940	Open in IMG/M
Ga0256361_1029113	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	937	Open in IMG/M
Ga0256361_1031725	Not Available	895	Open in IMG/M
Ga0256361_1031735	Not Available	895	Open in IMG/M
Ga0256361_1032537	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	883	Open in IMG/M
Ga0256361_1036163	Not Available	835	Open in IMG/M
Ga0256361_1037763	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	815	Open in IMG/M
Ga0256361_1038493	Not Available	807	Open in IMG/M
Ga0256361_1038896	All Organisms → cellular organisms → Bacteria	803	Open in IMG/M
Ga0256361_1040847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	782	Open in IMG/M
Ga0256361_1042113	Not Available	769	Open in IMG/M
Ga0256361_1042521	Not Available	765	Open in IMG/M
Ga0256361_1046399	Not Available	730	Open in IMG/M
Ga0256361_1047647	All Organisms → cellular organisms → Eukaryota	720	Open in IMG/M
Ga0256361_1048309	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	714	Open in IMG/M
Ga0256361_1048724	Not Available	711	Open in IMG/M
Ga0256361_1050932	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii	694	Open in IMG/M
Ga0256361_1052525	Not Available	683	Open in IMG/M
Ga0256361_1056640	Not Available	655	Open in IMG/M
Ga0256361_1057298	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	651	Open in IMG/M
Ga0256361_1057489	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	650	Open in IMG/M
Ga0256361_1060034	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	635	Open in IMG/M
Ga0256361_1060180	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	634	Open in IMG/M
Ga0256361_1063150	Not Available	618	Open in IMG/M
Ga0256361_1066031	All Organisms → cellular organisms → Bacteria → Terrabacteria group	603	Open in IMG/M
Ga0256361_1067052	Not Available	598	Open in IMG/M
Ga0256361_1068103	Not Available	594	Open in IMG/M
Ga0256361_1068707	Not Available	591	Open in IMG/M
Ga0256361_1072953	Not Available	573	Open in IMG/M
Ga0256361_1075797	Not Available	561	Open in IMG/M
Ga0256361_1078655	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	550	Open in IMG/M
Ga0256361_1081454	Not Available	540	Open in IMG/M
Ga0256361_1082946	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Lautropia → unclassified Lautropia → Lautropia sp.	535	Open in IMG/M
Ga0256361_1086152	Not Available	525	Open in IMG/M
Ga0256361_1086213	Not Available	525	Open in IMG/M
Ga0256361_1089010	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
Ga0256361_1094841	Not Available	500	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0256361_1002660	Ga0256361_10026602	F102620	MKLFDLIKDRVKEPQGVISDNEMVVLNRRDFLYSETSTASAFLRLFRAERVTYEMYSIIDFVHTNVCKIRPPTEVRVFQLSQSMTLPSLAASVLVGDLASNFRAYAPRGVQGIQSQDAFGQTLAKRFEVQLNSGLSMTDIGSGENAVDIIFCNASNEAEVSSGLKAFERVKRGFILIKGYGRAKAPNCGEIILSARLNVHCSLAGFGFCAAL
Ga0256361_1014255	Ga0256361_10142552	F023494	MKGNTALNRAFISFPQLNRLVTTTNFIDKKAHVRELLFVTSFQLNQLSKLKTKELG
Ga0256361_1018478	Ga0256361_10184781	F079635	ATDPYYDDAHGENDQNVCRDGYVRVMCNGRILQIRENVVNQSQCMNFLASARPADNLSECIHMANELATVENVKVICDWIAAHIEFASRNAPDDERRSFDQRFFLLNAAGHAAYAAAATDAEKADILDSRKDWLRWRVDDPENEDPKRATKGGQRTTPFSRGGAAPQDRRHRTYEEVQHIMFVANFLELHPTDWHRTFAQAENERIAAQPPGPFQEYGLDPADKFAETVMELCCHILGDMILGCESPVDMQHRFPTLIGAKALTAKDRYDIATADLWIHGDDFLFEIVPELQEMQRQEFAAAQAEGMSAQDIEAKYGKPIPDWTYESTQEERAFMKEVPQKEPNEQLKVPAIQVNDSQEADPGFEIGHHWWG
Ga0256361_1022386	Ga0256361_10223862	F072383	MKVTITYHDNQSFTVEEVVKLATDNYGRTAQVEVMPESTMAYDHIYFGLQQLVTHEQLSLLFERDASYQQDIKK
Ga0256361_1022511	Ga0256361_10225111	F059955	MACSLTQGFTLDCKDAVGGIKSIHLIDWAASGFSIGGSEVTATT
Ga0256361_1023024	Ga0256361_10230241	F030134	LTKDKIQPVSQRFKLRSCNFLMVEQTNYLYNCNTNEKIIQHRGSKRAYR
Ga0256361_1027841	Ga0256361_10278412	F007472	IQLGKMVYFTYKKLNICTVALLATVFAVLIAAMAVDWYSYKIEYSYTRVAASDTSLASTLYNYTQTTFDMFGQTVNVQVANTKIVRTSQQTYAQLGASGVNEQFKIQQAFVLIALLTAGLLFVAHTLYFFDGFRNKILFFIGITALRTILIIALLVVVVAETIAFLAFLGISDKIAKDSPNCLSGPCQKFADTVTTQLGQNTLNVAGADVAVSLQQVATWGPTAGWYLVLATIPLTVLATIIVVINRFPIPVDSLGTGEAL
Ga0256361_1028998	Ga0256361_10289981	F003488	FNGFIHDTPLYTGNCDCSHRRRIDHRKLIGNTILAIETDELGHRGYDAKDEDIRYDDVYMIHSGKWIFIRFNPDTNVSKIDISDKLDKLIETMNECITRIEQEENRELVEIIKLYC
Ga0256361_1029113	Ga0256361_10291131	F042749	RRAPVSKQLYHTSITVAASQIPLTMAGSTWMKILAVPCILLVAMAAVMTFMPSDSSVQPTTAVALVQSSQHTQSLALFKHAAIEDVYVYAGKEEHTRHLVPFICRLIKRHRFRLNIHQFFSVDDAPLRSVLWSHDSRVVIFPPFESYPQISSKGFTDMRAYVAAGNNLVFMGSYIALQVMNDAFGFSLRDDYKEGPYYRNDRNVRGTEFEYLPSRLNEPSPRVYGAMAKSLPPGAFSLYDSLGSVVVFYVRYDLGTIVYIGYQFDNPYQIDSWVRVIHAAMAM
Ga0256361_1031725	Ga0256361_10317251	F044315	HQQIDVAGLDGSESFRVRGVTRSRSVLMVGAVLALAVCGVLMYVNVGGSEPVDLLQQTCPDCLAKISRKISALSSDQKNMAQQFEVELDHLQHSVSMLKSEIARVNPRSGLVRVIKSASLTPTAAPLPSPVRSSVIVNSPVDHDSEYDESGFKKGANRAKNMRDKKYGAFPNRWVDKDTVEAFADHIYGPDPTTLDRKGVEREGYFTIAKIHSGMFYYINLEGVSNHHIKLIMQGTDGYNREYEGYGSIYTGPIYAGDHGVRDYFEVQDLVNGDVEFFRFSHPWTPPAMK
Ga0256361_1031735	Ga0256361_10317351	F044315	WAMPHQHIDVVGLDGSASFRVRGTSRSRSALIAGGLLAFAVCGLLMYVNIGSSQPVDLLQQTCPGCLAKISQKINALSDDQKHMAQQFESELDQLQQSVSQLKAEVTHVNPRSGMMKLKIASAPPSSGASEASNAVNTKLDHDPEFDESGFKKGANRARNMRDKKYGAFPNRWVDKDTVEAFTDHIYGPNPTTLDRKGVEREGYFTMAKIHSGMFYYINLDGVSNHHIKLIMQGTDGYNREYEGYGSIYTGPIYDGDHGVRDYFEVQDLVSGDVEFFRFSHPWTPPAMK
Ga0256361_1032537	Ga0256361_10325372	F052593	MAYIYPAPGVANVELTLEIEVSGDTNALAIPALQDITINNANDVFTWTQLDSGSKFNIPTTASNSIDMNLVVDQTVFFGSGSGADVAVNKGLFGLSKEKKLISFSLYMGDTNSGSSGKTISGTGYVVGLAPTVSADSPVWITPVSITVVGDYTV
Ga0256361_1035807	Ga0256361_10358071	F080126	MKKMTMPLAVAALVALYAGTASAQCAFDIAPAKGVKGSMVRNYAPCPGTESLGVTTSETEGGTESCAPVYPYKGAAVAATLYSYGPKGKCDVQTKATLVADCSTVTNGAGDLLGLGAAPCHVTYVKSKCSDILGTDGLSPIDGNLDTGWTLATLTRATFDDASNGDMTVIDFPVTFQFGTPKKGKIILKANSAEVLKPMVGVANADLPACTSLEIVDVTIKAPGGLPFAKL
Ga0256361_1036163	Ga0256361_10361632	F044315	MLVGVMLALVVCGLVMFVNNGSARAQPVDLLQQTCPGCLAKISKKINASSADQQHMAQQFESELTQLQQSVSNLKAEITHVNPRSGLVRVIKNDAIKTAFPAGASEAAIAVSTQSAHDPEFDESGFKKGANRARNMRDKKYGAFPNRWVDKDTVEAFADHIYGPNPTTLDRKGVEREGYFTMAKIHSGMFYYINLEGVSNHHIKLIMQGTDGYNREYEGYGSIYTGPIYDGDHGVRDYFEVQDLVS
Ga0256361_1037763	Ga0256361_10377631	F067528	LFELDFFELAQSGGSEQNSVSIALKPLCDGTFFKVWSGADQEKVNQINSLSATVER
Ga0256361_1038493	Ga0256361_10384931	F000344	MRPRHPHAAESGVGKHTARESERLQACATGKERVTNAH
Ga0256361_1038896	Ga0256361_10388961	F087401	MRRQRGLAGVIALATLVGLGSNLSPAAARITTEESASILVFPKVIADGTRDTIIQITNTSNNMRHAHCFYVNAAPSIPGEPISDENPPLWTEIDFDITLTKQQPTKWVVSTGRRFPAFEDTCAGQANDSGRQCDPTTTGGGDADCCDAGFDPGRIPPSAPDFTGELKCVEVDASGFPVGGNALKGEATLVDTADNDVSKYNAIGLKGFDTNNMDGTLCLGGGVT
Ga0256361_1040847	Ga0256361_10408471	F059886	VIYASRAAFATLRGRRHQLSPTIPRSPGIIPVVLSVASFRPLRVRL
Ga0256361_1042113	Ga0256361_10421131	F099393	PQRERETLMLVERGMPMRRFFPHGETQAPDSACGQVTRSGLVASRVRKVVFFSVCLPALLIALGAGDSLNLAYGQSESNAAVPTAVRAPDSGLSDQNRPARDRSEPTVTGAAMHVALFVPRN
Ga0256361_1042521	Ga0256361_10425212	F078620	VVHAASLKNLNSAAAPHDETFMYHGVDGGPIVMFKNRKQWPTPPTKGFTETIDALDNTAQLLSEYQLKEKLPGTGLDEPFEAGADVTGGGTTVAEEAGGSVAPVALVALVAFCIWVEHTNLMDADPGAGLVLLHTLLG
Ga0256361_1046399	Ga0256361_10463991	F047008	MKMTKDQKTCRKLWLEHVRESGGIVHTPPPMGDENGFCLVAMPCAYNSRHAKFYDVSFAWCADNDVFDRKVGEFIALDRQMFGQTTKLPGYIIDNMLEMDLVD
Ga0256361_1047647	Ga0256361_10476471	F063376	WTNLKIDYEAFAYDKLPVPQTDAFASWLKKQLVQGHVVAWMIMWNGQTYPIYDLTPPSGMYGHVEPVIGIQSNHPLNDSTVYDDDVVLHFTDGGTNTVHRTISSLPCKWAGLNQAADCNGFEYGIGYPFGFGWAAKGFAADPKPFVPAALKIQPYLYEPDTRSGKKPEQLKGTLTASELIAGASYAIYRWDSVAEALTYTDSYKVLSFTATGSVFVYSDEKTFISSGVTYYRVVKL
Ga0256361_1048309	Ga0256361_10483091	F032540	RGSVAVVPELGLATGADQVGGRSLRKRIVVAVVMLAFGCAAVALAAQSSSSDSKLRDTSVLKVGVSDRLDVWRQYQNDEDINPRKKKSPKADWEKQRSIPDFVDGIIGPSPTAMDEGGSKSRGSFNVKKITDKTDFYYLRISDRSGNNDRIRAELVGSDGYRLDWVGFGEIFTGPIHEGNLGETDYLRVEDLVTGEEQFFRFRF
Ga0256361_1048724	Ga0256361_10487241	F076149	MNKLLLTTLGMVAAVSAAYAQGTFNANNNFTPAGATAKAFVLGLDGNPLAKANGRVEILSGGTSLSPNGSAGVALTLDGLFFINGLVAPGAGLGGTANLVVRAWDVTTGATYADATSRGSVNVVISSLGGGTTPPATFGNNSDFKGLKLEGGGVIPEPSTVALAALGVA
Ga0256361_1050932	Ga0256361_10509321	F004916	MKLTWILFALMALSSLALVLATEVQEDCHPTCRWQCDDPICPAQCHPVCERPKCQVHCEETPCAQCKVHCDKPQCNVRCPKDLCEKSDCPKCETVCAPAQCRTSCVAPNAVCTPMCEETKCDWKCKKPTLCPRPKCELVCETPKCAAKPPAAPAAANTTCCACNQANLKASLIQAGEAKGVAPSFLELM
Ga0256361_1052525	Ga0256361_10525251	F102620	DNEMCVLNRRDFLYSETSTSSSFLRQYGAQQVTYEMYSIIDFIHSFVCKIRAPTQVRVFQLSQSMTLPSLAISTFVGALASDVRVYAPRGIQKVNATDGFSLELAKRFEKQLNSGLEMAELGNGSDAIDILLCNASNEAEVSSGLKSFEKVKRGFILIKGYGRHKAPNCGEIILGARLNVHCSLAGFGFCAAV
Ga0256361_1056640	Ga0256361_10566401	F032913	LMDEAITISDRIHSVRHLLINVKAEALGIQTKEDGNWIFTNPFGKGADPPDQDLAPFRGQITELTTKSEKISTDLKDLIKRCHSARNDALVLDSELYDEIHKAKVISADAVQGIHHHLDHVESFNHKDYDIVHRVDAKLNDKFRITRHRLNGMINLANAMSARQPNEVSEVTALATDLLIVNAETQERLGRMANLLDSIEFERGFRAKQ
Ga0256361_1057298	Ga0256361_10572981	F051950	MWGYISTEASYQLNFNVGFSTTRSDVLVHLAQXQYXXXFXFAFLXSFYYLVASRVVRYRSLKMRPKMSTSFRPHGKXGDFLAAVIPAIXCLNILTNSNFILRLIEXQSESSLFTIRVRARQXYXIYKFELKNFTDILTVPKNVGYNRXCVNTFGDLQVAEDYLYVLQLRSQNKXVKNYXTEVLQKTGGIKKNHIVAPQEQLRLELNN
Ga0256361_1057489	Ga0256361_10574891	F023352	MRPRHPHAAESGVGEHTARESEAPNVVPPGKSARRTP
Ga0256361_1060034	Ga0256361_10600342	F095362	VNIPVQAKFIEWFYNKSFPSYDSKRNRNGFLEEMLDLNKIDHDALQYWIQEAFHQGAKAQRELDGEK
Ga0256361_1060180	Ga0256361_10601801	F032540	KMARGSVAVVPELGLATGADQLGGRSLRKRIVVAVVMLAFGCAAVALAAASASTDSKLRDTSVLKVGVNDRLDVWRQYQNDEDVNPRKKKTAKADWEKQRSIPDFVDGIIGPSPTAMDEGGSKSRGSFNVKKITDKTDFYYLRITDRSGNGDRIRAELVGPDGYRLDWVGFGEIFTGPIHEGNLGETDYLRVEDLITGEEQFFRFRF
Ga0256361_1063150	Ga0256361_10631502	F042297	SFETVVLNKVAKIVKCDNAAEFFCGTLSVICDKADAMKILRELNKDYKNKVQMSPDGSYGYLFDFVA
Ga0256361_1066031	Ga0256361_10660311	F061789	QAAITWGQRANDIGTLRKDNEMICKSKYVMARGYKILEKYQDAENLLLAAGDLVAKSNDWPQITKIERELIAIYRLTERDAEADEAERRIATLTEIVN
Ga0256361_1067052	Ga0256361_10670521	F100451	NFLELHTTDWHKDFAAKEAERLAAQPPGPFQEYGLDPADKFAETVIELCCHHLGDMILGCESPVDMQHRFPSLLGAKVLTAKDRYDIVTADLWIHGDDFVETVVPELQAAQRQEYAQARASGMSEEDIEKKFGKPIPDWTLESTQEERAFMKEVPGQEGNPTLRVPAIKINDQQPADPGFEIGHHWWG
Ga0256361_1068103	Ga0256361_10681031	F046955	MPAPRQMTANTLNALKGWPQMNAVDYHAAFDSAIPSGDLPVLAGSVVSLNPSGNFILGVGTSAVMPMFLFNNSDDPDVVNDGGDASTTPGVWIPISPTGQAMALVAVGAYELVSTAFVAAAYPPNTPLTANKSGSANPGKLKAGTLYTDMI
Ga0256361_1068707	Ga0256361_10687071	F019472	PVAVYPATANTLYLRSIGLGPPPSYYYELQDVQVVEKTREVANPAYVPASVDADGNDVPAQGEPTITETYTETTVVVLKNGNVNMTIDQWDNWAAGPETEDEPYQLDCIALNLGLVRA
Ga0256361_1072953	Ga0256361_10729531	F016245	GLGTLSVGLSNSVRQGTGIRMTVSFTPVDAVPGDGRFIMTLVGAGFACAANTAVTFVSPAGASGSVSIGPGLVLTLQLGGGVFSAGGAVQFWFGGVTNPSANQSQVNDLAAVTVSSTGDVVGGSVTGVLPAIVNGLGTLSVGLSNSVRQGTGIRMTVSFTPADAVPGDGRFIMTLVGAGFACAANTAVTFV
Ga0256361_1075797	Ga0256361_10757971	F081065	GYTTASGTVVGVSGGAGFSTTALNPTAVAAGAQGQVKVVGLGREVAYPTGELNQWGDTNTIVQVQIANSQLVAPSIAV
Ga0256361_1078655	Ga0256361_10786551	F035285	DFVAPTGVAGEIAKVVCEPLSSLWQKSPSETKESWQCKRDKKQVDFDIYVSEVEKQRVSNEALALLGTTGSDQTWADTPILCGNKWTMGVADLKTRDALIADLNSAGVDAATC
Ga0256361_1081454	Ga0256361_10814541	F025755	GKLMKNKIVKTIGMLSLASLMSTTAFSQITISGYAEVGMITGSNKQTRSTAHSKGLGSEFLVTVAGKGTMSNGWTFSGYQNFDTDEVGNGVDAANVNPMTTRALEISPNKDFKLFYTYDGVYGGEIARTAIPVVTERPVDLTGLSGLSEFIDVTSGGHAVGAEALNLGPAGRFSVAYNPN
Ga0256361_1082946	Ga0256361_10829462	F101271	ALAGRDWAKLQQSIHALQQAMQHISSFPGGAEGVRKQLLASEGTARETADHLIERVMIERRSSAELIRLQLQRLQALQTMTSFEEDTGLYSETGATKGRGGRLSTWV
Ga0256361_1085044	Ga0256361_10850441	F101143	RLTQSRAGMITAFYNYMRNPYATFSEGGKQELPRSRNPKLLISRSIREVAAQAKITRLRAVLV
Ga0256361_1086152	Ga0256361_10861521	F016245	TVSFTPVDAVPGDGRLVLTLVGAGFACTAGTAVTFVSPAGGSGTVSISAGLVLTLQLSGGTFSAGSAVEFWFGGVTNPTSTQPQTNNIHAVTTTSAGVVIGGSVTGILPAIVGGLGTLRVDLSNTVRQGTGIRVTVSFTPVDAVPGDGRLVLTLVGAGFACTAGTAVTFVSPAG
Ga0256361_1086213	Ga0256361_10862131	F016245	TVRQGTGIVMTVSFTPVDAVPNDGRFVLTLVGAGFACSASTTVTFVSPADGSGYVSISAGLVLTLQLSGGTFSAGQAVQFVFGGVTNPNSNQSHISNIHAATLNAPGNIVGASVTGYLPAIVNGLGALVVGLSNTVRQGTGIVMTVSFTPVDAVPNDGRFVLTLVGAGFACSAS
Ga0256361_1089010	Ga0256361_10890101	F087401	IALATLVSVGGIASTASARVTTEESASILVFPKVVADGNRDTIIQITNTSNNMRHAHCFYVNAAPTDPDRPISLNESDYNPPLWTETDFDIWLTKQQPTHWVVSQGRRFDPTDATCLNAANNSANNCDPNTSGTGDADCCDAGFDPGRIPPTAPDFIGELKCIEVDASGYPV
Ga0256361_1090016	Ga0256361_10900161	F082151	FNSKDVPLSLPRELGCQLENTLQISQLAVYDPFGTNVALNKPCDTTNEMAINRLIPYLPAGPTNVYPSLSSCSRAVDGNLANRNGNEIYQSTEPDSDSVIFDLGQNVLIKRIMYWNRLDCCQNMIAGATLEVLNDNGDVVDTEVFSNQLVQSFDFPASQSRATLFSHCNY
Ga0256361_1094841	Ga0256361_10948411	F067419	KVSIHKWVSPSVYLVKVLSVEFGFEKKIPIGTELCGVLVRFKDFGYYAYNQVCLFKTHHLLPNYMGGDPLFTKILNGTVAPRNHLVQYKTIIDACYLRVGDYIRINLETYAQIEKVLLLKEGLEGSEFEVRLTSGNRFFYETGFKKGQLMRGILMRRLFLTNVTTT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026439: Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Law_RepB_8d (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences