Basic Information | |
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IMG/M Taxon OID | 3300026422 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133460 | Gp0293501 | Ga0255308 |
Sample Name | Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Colum_RepA_8d (Metagenome Metatranscriptome) |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 79628110 |
Sequencing Scaffolds | 37 |
Novel Protein Genes | 39 |
Associated Families | 31 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii | 1 |
Not Available | 24 |
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 2 |
All Organisms → cellular organisms → Eukaryota → Cryptophyceae | 5 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales | 1 |
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → unclassified Perkinsus → Perkinsus sp. BL_2016 | 2 |
All Organisms → cellular organisms → Bacteria | 1 |
All Organisms → Viruses | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States |
Type | Environmental |
Taxonomy | Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | freshwater river biome → river → river water |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
Location Information | ||||||||
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Location | USA: Louisiana | |||||||
Coordinates | Lat. (o) | 29.8571 | Long. (o) | -89.9778 | Alt. (m) | N/A | Depth (m) | 5 |
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