3300026392: Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0906-MT (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300026392
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114432 | Gp0238655 | Ga0213908
• Sample Name: Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0906-MT (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 59152766
• Sequencing Scaffolds: 16
• Novel Protein Genes: 18
• Associated Families: 16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales	2
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae	2
Not Available	12

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Enriched Soil Aggregate → Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → research facility → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Iowa
• Coordinates
  • Lat. (^o): 42.0
  • Long. (^o): -93.0
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000734	Metagenome / Metatranscriptome	915	Y
F000817	Metagenome / Metatranscriptome	879	Y
F007777	Metagenome / Metatranscriptome	345	Y
F016001	Metagenome / Metatranscriptome	250	Y
F020183	Metagenome / Metatranscriptome	225	Y
F023352	Metagenome / Metatranscriptome	210	Y
F024104	Metagenome / Metatranscriptome	207	Y
F026908	Metagenome / Metatranscriptome	196	Y
F030638	Metagenome / Metatranscriptome	184	Y
F040271	Metagenome / Metatranscriptome	162	N
F053640	Metagenome / Metatranscriptome	141	Y
F054254	Metagenome / Metatranscriptome	140	Y
F055474	Metagenome / Metatranscriptome	138	Y
F061584	Metagenome / Metatranscriptome	131	Y
F062778	Metagenome / Metatranscriptome	130	Y
F096734	Metagenome / Metatranscriptome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0213908_100482	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales	3854
Ga0213908_102916	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae	2048
Ga0213908_103209	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae	1956
Ga0213908_114166	Not Available	939
Ga0213908_117226	Not Available	840
Ga0213908_118715	Not Available	798
Ga0213908_118937	Not Available	793
Ga0213908_120794	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales	750
Ga0213908_121699	Not Available	730
Ga0213908_130443	Not Available	595
Ga0213908_131723	Not Available	579
Ga0213908_132423	Not Available	572
Ga0213908_132435	Not Available	572
Ga0213908_139437	Not Available	507
Ga0213908_140374	Not Available	500
Ga0213908_140448	Not Available	500

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0213908_100482	Ga0213908_1004822	F020183	MTLSINAKTYTGNLYSPTSVVYNGPIKTASIKDDVRLGQTAPKPTDVFSGLGRTQAKLTRTLTLTGALTTTGDAILTIDVAIPVGFASADVDTLLNDMGAFLASASFKTHVKTPQVAF
Ga0213908_102916	Ga0213908_1029162	F030638	MAAAAALTLKNNAAANVTFDVYSVNPDSVEWIESGATSILGTSRAVLSRKIPTDKASGVYRIGGKLTRPVVNATTGALDGTVTGTFEILRPAKLTVSEVDEMVARFKELVSQAIVKTAAESGAIPT
Ga0213908_103209	Ga0213908_1032093	F030638	MAAAADLTLKNNAAANVTFNVYSVESDAVEWTESGATSILGTSRFRMSRKVPSDKANGVYRVNGKLTRPVVNGTTGALDGTITMNFEILRPAKLTVSEVDEAVARFKEAVGQAIVKTAAESGAIPT
Ga0213908_114166	Ga0213908_1141661	F016001	VWESAIATTVFSRRLDPIPSWAFLLQVFAPDAVETPSRLLTPVAFSATLSSHCRRRPSAFRHRAWLASLEAAYLLEVLHLPAIPSCPEISDEVRHSVSPNPCGPGSTF
Ga0213908_117226	Ga0213908_1172262	F061584	VASHEVGRSTECCERRSCKRIGLLAPTMTSLFPVSLCGVTPPPAPVLLRVRVHPPMSFTSPTEYELLQPCPACCHTKRLPWGFVPHRGTSTQSPLPSELPMSRPTVPSSAFLAPSTVCSSVCLAGLFHPAATSGIHLPGVISRCLAASPRRRPVPS
Ga0213908_118715	Ga0213908_1187151	F023352	MRPKHPHAAESGVGKHTARESEAPNGVPSGKSAWR
Ga0213908_118937	Ga0213908_1189371	F026908	LTWFVSRWRNHQPKRAEKPHSITRWTRKNGTLSGPATRPKTPLAVENSVGKLAAPEMRRPMSARERELGEL
Ga0213908_120794	Ga0213908_1207942	F020183	MALTFNSKTYTADTFAQNTVGYYGAAQTVTVKDNLLLGRTAPKASAVYSGTGRTQAKLTRTLTLTGALTPTGDSIVDLQVNIPVGAASADVDALLND
Ga0213908_121699	Ga0213908_1216992	F000734	VKTFQNVGDVKNGTAGLRTKSNLRVKRRDPWHRANAPSKAVADLALSGEDVEENS
Ga0213908_121699	Ga0213908_1216993	F000817	VRSKLKVSWIIPGDWGKVESGWLAWPLLIRIVRFGSGGRIHQFL
Ga0213908_130443	Ga0213908_1304431	F053640	SKRSGLKDVAESTAGIIPGDRGKVGDNWCRPPLQWRKSGARHLSPVPLAGVVSGQSTHELGTELQGAIRNRVEQSQAGGKFRTACRRSHPRGFWLLLRRPERSHGSGGTTPPKGPARLHEQGAQRSRGGGELTDLGKVREIPQWGGVKKHVAPLQKRTQPKR
Ga0213908_131723	Ga0213908_1317231	F024104	VPVRPFGSTTAFRIAPVAAASLPEARCTSTPRFGLPRPRSPLPSGTFTSLGIKAFNRVCCLPVRLTNPPDFLSLPAARSNESLGCGSSFQVRYVSAGLLF
Ga0213908_132423	Ga0213908_1324231	F040271	MQALPDLSRQFETAFRSPPTAARYRATIERSKLPACFFTALQSLASNPFGLLLLRPGSVCPSRGAIYVSDPLSNAGLCIFDWSPGLRSPSGFLGPSGSKRSARLPTDKLPLVLGPISLRSPPTFRFISSPTDQRSRSATAHQVC
Ga0213908_132435	Ga0213908_1324351	F007777	VRPVLEAVERKAASRSGLLPEMEADAHLRTDPQLAKTSGGEQGAHVSPDPDATFRLRMPVGEQTAGGSL
Ga0213908_139437	Ga0213908_1394371	F055474	MPFQIKAFSRLGYPLAHLRRSPDFPSLPAARLQINDDGHGSMFQVRYVLRGSLS
Ga0213908_140374	Ga0213908_1403741	F062778	GIFFAPRRSFCRTTDQRSKARLQTIPNRLRLLETAFHFLPTTTRYRVTIERSEFLACFFAALLNFVLDPFGLLLLRRNLVSPSDGEISATSPLPGSQFSSFAWRSNLRSLLGFLGPFRSKRSIQPPCEKLTFVFGPISLRSPPAFHFISLPTDQRSRSATAHQVYC
Ga0213908_140448	Ga0213908_1404481	F096734	LQVARSSFAPRSAATILFITQRYGSSFQIRYFLPGSL
Ga0213908_140448	Ga0213908_1404482	F054254	LTQLRGSVARPVLGAVERKAASRNELLPEWRADAHLRTDPRLAKTSSGEQ