3300026378: Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 4-4-E_D

Overview

Basic Information

• IMG/M Taxon OID: 3300026378
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133410 | Gp0290882 | Ga0247712
• Sample Name: Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 4-4-E_D
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 83692996
• Sequencing Scaffolds: 20
• Novel Protein Genes: 20
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	1
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum → Magnetospirillum molischianum → Magnetospirillum molischianum DSM 120	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Hillslopes Of Landscape Evolution Observatory, University Of Arizona, Oracle, Az, United States
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Hillslopes Of Landscape Evolution Observatory, University Of Arizona, Oracle, Az, United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → hill → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Arizona
• Coordinates
  • Lat. (^o): 32.5788
  • Long. (^o): -110.8509
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000911	Metagenome / Metatranscriptome	840	Y
F004067	Metagenome / Metatranscriptome	455	Y
F016316	Metagenome / Metatranscriptome	248	Y
F030702	Metagenome / Metatranscriptome	184	Y
F032026	Metagenome / Metatranscriptome	181	Y
F034496	Metagenome	174	Y
F036883	Metagenome / Metatranscriptome	169	Y
F042322	Metagenome / Metatranscriptome	158	Y
F042587	Metagenome / Metatranscriptome	158	Y
F058771	Metagenome / Metatranscriptome	134	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0247712_1000153	All Organisms → cellular organisms → Bacteria → Proteobacteria	6084
Ga0247712_1000873	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2707
Ga0247712_1001076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2472
Ga0247712_1001135	All Organisms → cellular organisms → Bacteria → Proteobacteria	2422
Ga0247712_1001269	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2299
Ga0247712_1001365	All Organisms → cellular organisms → Bacteria	2231
Ga0247712_1001372	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2226
Ga0247712_1007100	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1064
Ga0247712_1012421	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	822
Ga0247712_1018558	Not Available	682

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0247712_1000153	Ga0247712_10001537	F032026	MFTVHVRWVDADKTRASFTLPGRLEWSAEHVSALIQMLSEIRAEMSPSVPVEPPPPYALEPLHDPRYATELHPFSGGTMLELRHPALGWFEFVLPSRERARMSALLAAQESQWRAHRR
Ga0247712_1000873	Ga0247712_10008731	F101231	MRARAVLSALLAVGSMAWATAAQAQVPDRYGFFGHIDGRWMWLGGDQIKTWQGAAAPSTSGPGGQALLGFKMSAHWDIALAGDIQSLIAEVTKFRNGTLSVDTRHQHVDLELGYSEDWWRVSFGLRGIHYNQGAMYNVPGFAGYDQREMYGIGPKAGFGARLSLSDNWAVIGGADAALVYASFNDTGSGVLLNNGAYW
Ga0247712_1001076	Ga0247712_10010764	F064062	MTRSQVRTFVEQSSTERIREVLDLLQKLKKHVPASERPQSEVPFLLDLRDHEAFFRELADAKLRR
Ga0247712_1001135	Ga0247712_10011352	F071487	MTLTDVVTLAVPTMVFACGIALLSHRFFVVYKGWSMREFSYRSHVPGILGTASMLFAILSASSLGWAYAVLIVLVGFAVAYLYVYVFRMWVEAALLGPILAVLSILKPPRFWI
Ga0247712_1001269	Ga0247712_10012692	F095925	VSGDTSYNEFVPLAMAAAVAYVRVVGPEERARPTAGLLDVVASALSVWVPIFGSRVPAAPRLRLADEEVARGRFCDGATRLCFRDGRPPVGNLAILHGDLDAGIRRLKRAGLRFSEAMVEPSPRRVPRILPRLPG
Ga0247712_1001365	Ga0247712_10013652	F036883	MFVTSLKWNFDTEAIRGTPKTQGVFGLWDEGRLVYIGSTERNFFLPDALRELHALQQRGVIHATHFTWEITITPRSWAGELLRLHFSKHGALPLYNQPSSALQALRREGGPRDLR
Ga0247712_1001372	Ga0247712_10013722	F042587	MLEPKRKESVYTRSLARAIEIAGGVEPLADFLGCSAGDVRRWTSGESHAPMPIFLAMVDILAANALTPVALENLPAARARLSRGRPAGGRPA
Ga0247712_1007100	Ga0247712_10071001	F062529	MYSAPIMTTSQARETIDRLSEQTASLRRYGVAPDASIAEYNDSLMAFVPRDKMPLFYIGKGRYVGDTARPGAFVQGGLFRQLVERARTDFETLLLERRQQAPTR
Ga0247712_1012421	Ga0247712_10124212	F086772	MSATTTRAWLYVKGPESIRIVIDGVSVAVYGPGPRFNHSHFGEEIDATLHQAAVEQSLVLDGWTLEQLTTERRSTPARPPRGAERRGAMRIVRDHGDR
Ga0247712_1018558	Ga0247712_10185581	F030702	MTVLNSPVGRRQVLKGFLIAGPTLAIAGRLGFADGANAWPTKTDETPDVQDFTDIFVASQQPTVY
Ga0247712_1019703	Ga0247712_10197031	F058771	DTHCMQRLYSRGESNLLESQAQDMWGAQALMMTMTQKTLQHVMTDPAVDTTLTMVADTVGLTKEMATTIVASGLPRMANVADGDPWVFKAMFAQSIKYLPQPAPAFYATLAKNAAARQALAAGFQLIFGPMTESIHRDTARHTNATAQQTSQVLAAIMPAAVKALGKANSNGNEMGFGRQLRNLNA
Ga0247712_1019724	Ga0247712_10197241	F016316	VSRRVWLWLERGGGGYFLRDAATGEPVRWEDPRIRVVPAAGVSYRPE
Ga0247712_1022278	Ga0247712_10222781	F067309	DPSMSAHIIGRPHDDLLDVLLGPGAEPEQAFIAGREEGPEEGGGGEDHPLGEEPTEADR
Ga0247712_1023131	Ga0247712_10231311	F079189	VVRDRFWWFYGFRNLNSDNWVPGYYNTQSGLPEPLYTTLRNHATKLNYQLNPNNTLAYSAQYNSKALPNSGASAFVDSASTSLTDFPYWIQGVTYTSVLSNRSTLEIKWGEFGWRWWQRPGADEIAREDLDTRLVRGSRNAPFVDRSHHMNISGVYSLNTSGTRVGDHTLRIGYGYLYEGAPYQVLSPKDNLKTFWRGGFQRPV
Ga0247712_1024629	Ga0247712_10246292	F066994	MTTTTTSAEFGDRVRSVLAEQPTSGVIDRFAANDLLLDLLDVAHSEVEEARVMQALADLPKSNLVDRTDLNTVLA
Ga0247712_1025432	Ga0247712_10254322	F091496	MAREIDWQLFEKAVDLTAMALRGGMGGEGSQPPAFAAQVFTEVWGALKQAAGDLPEKPSAGFSA
Ga0247712_1027352	Ga0247712_10273521	F000911	MSISMDRFASEGHFATYDAYKAAPQQVAVFQMQCRSCGFEPEDVVSVPRLCPKCHGESWERFARPGSILDNASRY
Ga0247712_1029689	Ga0247712_10296891	F034496	VRQQLIRSSGCAWTEWRVPMPGDEQHSLEPPADDSPRPTLAPPWLALLTAWLGLTVLIASIVLIFLPGSRDPQAELERQLEYSIADRFLPFPIYGIALTLFLGIVVLWQMRREPRPLAEALVAQRVQAWVGVVLALGATVIIYAWVGLRGP
Ga0247712_1029906	Ga0247712_10299061	F004067	MDVERPPICPACGVTMVPAALSEHARAGLDWVCLECEETEEPES
Ga0247712_1036444	Ga0247712_10364441	F042322	VSELRSVVEQYRGEVLAELPDARVEEDFAELQRAGELLEVERLRRLLEIERRGVYTRDGHLSVAS