Sample 3300026372

Basic Information
IMG/M Taxon OID	3300026372 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133548 \| Gp0296337 \| Ga0256804
Sample Name	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 F5
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300026372 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0133548 | Gp0296337 | Ga0256804

Sample Name

Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 F5

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	114007101
Sequencing Scaffolds	42
Novel Protein Genes	43
Associated Families	39

Dataset Contents

Total Genome Size

114007101

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	11
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	2
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	7
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Niastella → Niastella koreensis	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Lecanoromycetidae → Lecanorales → Lecanorineae → Parmeliaceae → Imshaugia → Imshaugia aleurites	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae

All Organisms → cellular organisms → Bacteria → Proteobacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Niastella → Niastella koreensis

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Lecanoromycetidae → Lecanorales → Lecanorineae → Parmeliaceae → Imshaugia → Imshaugia aleurites

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium

Ecosystem Assignment (GOLD)
Name	Sediment Microbial Communities From Tidal Freshwater Marsh On Altamaha River, Georgia, United States
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment → Sediment Microbial Communities From Tidal Freshwater Marsh On Altamaha River, Georgia, United States

Ecosystem Assignment (GOLD)

Name

Sediment Microbial Communities From Tidal Freshwater Marsh On Altamaha River, Georgia, United States

Type

Environmental

Taxonomy

Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment → Sediment Microbial Communities From Tidal Freshwater Marsh On Altamaha River, Georgia, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater river biome → freshwater marsh → sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Sediment (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

freshwater river biome → freshwater marsh → sediment

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Sediment (non-saline)

Location Information
Location	USA: Georgia
Coordinates	Lat. (^o)	31.3377	Long. (^o)	-81.4644	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Location Information

Location

USA: Georgia

Coordinates

Lat. (^o)

31.3377

Long. (^o)

-81.4644

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F000445	Metagenome / Metatranscriptome	1131	Y
F001823	Metagenome / Metatranscriptome	630	Y
F003059	Metagenome / Metatranscriptome	510	Y
F010544	Metagenome / Metatranscriptome	302	Y
F014308	Metagenome / Metatranscriptome	264	Y
F015034	Metagenome	258	Y
F017154	Metagenome / Metatranscriptome	242	Y
F020378	Metagenome / Metatranscriptome	224	Y
F020966	Metagenome / Metatranscriptome	221	Y
F031548	Metagenome / Metatranscriptome	182	Y

Scaffold	Taxonomy	Length	IMG/M Link
Ga0256804_1000975	Not Available	1761	Open in IMG/M
Ga0256804_1001054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1719	Open in IMG/M
Ga0256804_1002102	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	1412	Open in IMG/M
Ga0256804_1002221	All Organisms → cellular organisms → Bacteria → Proteobacteria	1388	Open in IMG/M
Ga0256804_1002446	All Organisms → cellular organisms → Bacteria → Proteobacteria	1346	Open in IMG/M
Ga0256804_1002751	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1295	Open in IMG/M
Ga0256804_1004690	All Organisms → cellular organisms → Bacteria → Proteobacteria	1084	Open in IMG/M
Ga0256804_1004782	All Organisms → cellular organisms → Bacteria	1076	Open in IMG/M
Ga0256804_1005140	Not Available	1051	Open in IMG/M
Ga0256804_1005197	All Organisms → cellular organisms → Bacteria	1047	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0256804_1000975

Not Available

1761

Open in IMG/M

Ga0256804_1001054

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium

1719

Open in IMG/M

Ga0256804_1002102

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae

1412

Open in IMG/M

Ga0256804_1002221

All Organisms → cellular organisms → Bacteria → Proteobacteria

1388

Open in IMG/M

Ga0256804_1002446

All Organisms → cellular organisms → Bacteria → Proteobacteria

1346

1295

All Organisms → cellular organisms → Bacteria → Proteobacteria

1084

Open in IMG/M

Ga0256804_1004782

All Organisms → cellular organisms → Bacteria

1076

Open in IMG/M

Ga0256804_1005140

Not Available

1051

Open in IMG/M

Ga0256804_1005197

All Organisms → cellular organisms → Bacteria

1047

Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0256804_1000975	Ga0256804_10009751	F062909	LAGVPGADGKTLYLMSLARTRLDPPTGMLAGALMGKVKGGIEQGVKESLKNAQAHLAAH
Ga0256804_1001054	Ga0256804_10010543	F001823	VPAHCRMRAIDRDLIRGGHYGQRPRVPHLKAEHMAAPTNAANVKKVLANS
Ga0256804_1002102	Ga0256804_10021021	F017154	VTSPFLEPVRSTWSRVAGVAVLAGGLVLTAVLAYELFDLATDAASRRMFNSSSMIFGLVLLALNGICWQAGYRLVFQRPDRTGTLFSRPAWFAIGTGLLVITILMAIRIVQARTPTLLDVQVVLFLAGIGVWCLVLALRRDGTAQ
Ga0256804_1002221	Ga0256804_10022211	F001823	MRACDRDLIRGGHYGQRPRVPHLKAEHMAAPTNAANVKKVLVNS
Ga0256804_1002446	Ga0256804_10024462	F001823	MRAIDRDLIRGGHYGQRPCVPHLKAEHMAAPTNAANVKKALA
Ga0256804_1002466	Ga0256804_10024661	F034983	AVARRDERVSLPAVLAELDDDARRLMSEIAVEGVPEDGLSAEECVRELRRQPLRARMADIQKRLAGASGEAQEALLAEKTRLVRQMTGL
Ga0256804_1002751	Ga0256804_10027511	F077460	MSVVVRPIGLLKAFCRDRLDEQDRVVLPDRNGCTLETVCQEIGLPKGLVSLFIVNGHIEENSYRLQAGDEVKCVAIIGGG
Ga0256804_1004690	Ga0256804_10046901	F014308	MSDCSIGIQVIMPQTGTSPKSTPAQQANEREAATPPVTRQAPPPPGMGKFVDKTA
Ga0256804_1004782	Ga0256804_10047822	F058543	METVTISGNINEKKKAEFFQTMESLTGLVEKQCHGLDIRVKDDHSLIIKITFDGKDQMEKNFYTGEFNILKGTVKSLCEDVRIKINDTAVNNN
Ga0256804_1005140	Ga0256804_10051401	F094338	ALSVLRKEGVKNPEYSYPRVAAAMRERPIPEVKGVQAVMDSVKTSKSKVTLAKDVMDGSLIEEIDKTGYITKLYGK
Ga0256804_1005197	Ga0256804_10051971	F055828	MLTRDKLRADQWRAVRNTPHHVIVAVSATGGSPFDEMLERSAGLQGIVDAMHSTHPLVREIADSTQIMQAQDEIREWYYTLPDAQRI
Ga0256804_1005439	Ga0256804_10054393	F082880	FPYVNSARRIEHVGGNQFAIEEWICPLTVKHLSENPKMAVLIWDPASDDGYEILGELLMFESQAFLNGFAPEMEENIYLPQVKRRLIIRAEKITAFSHALRCDEIQMLAASRAKVTYSTRDDGDGRREVPLCTFAPEWAEHARYDRSDDPCDDGRAGAV
Ga0256804_1006400	Ga0256804_10064002	F071793	MENRNSNRHKTDQSIVFTFFTSHSFNNAFDGKMKNYCACGLYAELQTRFKDGTVLLARTTSNPTERLPAKIEEGFRSISLVEVKWSKPLSSNGVVYYGTGLK
Ga0256804_1007324	Ga0256804_10073241	F020966	MRTPRRRLCVGLLAALLWQPLLAQRMVGGGLNYAPRPAVYDVLSVDADARTVQLRAADGRTGTVYVAEEVFDVSTLKAGDKIRVDFVVPDASNKSLRAASVWLEK
Ga0256804_1008313	Ga0256804_10083131	F094847	MQKDFTVIFSSSDKKAARDGILFPLTAMDSAYGTGPIKYVTIDLLEKLGYLAPNAFGGLSISPQVSQLFSAALEIFEKSEQTEKGDYPYVGDVESPTGTHTVWISPNSTRGKHTLYLPKD
Ga0256804_1009019	Ga0256804_10090191	F060457	MYKDNAEPHNSSSDLGIFLSTIFHIASIACVPFLVNGTVNGNMYACGLLIVWTIYYSMRLAKSRKLLGLAFFVMILSAVVFGIYNFGLMSHYKNAKIYLEEEEIFCRETTYETLLSKYETEKSMISANFRICLDKAHVQPETCIKEVNHGTSLNEVMLS
Ga0256804_1010775	Ga0256804_10107752	F094061	MGESENDVEVGGGEEFGLAFFKPSLSGDVLTLGAVSIAAGVIEDTLCAAVGAALDVATQGGGAAVKEVGDDPVLIWG
Ga0256804_1011018	Ga0256804_10110182	F034869	STGGQGQRAAAVEAGTTMGSSFNRYYTLQLKRKGFRDLAKLERPDYPFPPSIFVAKKDALQTKRRAFKSLLTAMMEASGRQKSSKELSLQLIRKNLRIQNAEVVEAAYEDGVTLSFPYFTERQFKISLELLEKSMDQSVQLAYRQVIDHSILDEINRAGTNRP
Ga0256804_1011508	Ga0256804_10115081	F040358	HLDVFTSQSDDKRSLANINLYGSNTMRVAIFALAVLAGGGAAEAGQIEVLSASPRHIEIAASCWTAGSNCQQEASDFAQGYCHGGNYPRRALYVRSGLVERSFFSERVIFVYRCNQQSIICEAGTC
Ga0256804_1012873	Ga0256804_10128732	F057478	MQWIRSLVFTTLLFIGTLAFGVAVLVSALLPLSIEQRYVVPRSWGLLLTWLAKVI
Ga0256804_1012924	Ga0256804_10129241	F062963	VPVLRTVKNMIKNKNGTQPFRGSLPIQLVKTDNANIGFKIIEAEIKLEGENVVITNANLNQAKIDINQKAFSALQSAIDPAKLKAVLPNEFQKLNMTVVSTRFRSYGGHAIAEINLAAASPLNIQ
Ga0256804_1013584	Ga0256804_10135841	F020378	MKKYLIASALIVSFAAPAFAEQFYVVFDPASHKCEAMHSIPSGMKSMGTYASMRKAKQAMKGMKECGAA
Ga0256804_1013588	Ga0256804_10135882	F031548	ATLMVFIGSGVSMADGWKNESGKRGYVYGHYKKTEYRHYQHYAPPRPVYVEHHYRPVVVERHVYHPPVVYQAPAPSGYFFGMSVMEPGMAFSFGVSGH
Ga0256804_1014705	Ga0256804_10147052	F003059	MVRTGHVIGVVGVVATAIAGTPVSAQVTDAVYRGTMVCDKLPFSAGKSREAIEVTVAAGAVRYTQVVRLHDAAVASPEQGTGTLSGDAISLQGSWKGGNRQYEAKYSGTFVRRHADLKGTQTWTDGGKTMTRSCTGVIKRPFKVFLPRDKK
Ga0256804_1016723	Ga0256804_10167231	F098592	MDFGSIRRCVAGIVLALAAVGLGLPPVDAAEKESKPLAARVTTIDFNECEPYQVRGQIMDLHPGHGTIIVAEREIRALDVGSGGKPIRTEFLTTDGKPESPSAFKIGQYVWVKGVLHPDGFVAAFVVQKITK
Ga0256804_1017819	Ga0256804_10178192	F048543	MANEKDINPDDMQDFKDSIFRNLALLTLPWLSFQQDMLAIMKKGIEDTSHIKPVQKLTLLELHALMMILDPSRTWRSPFDAGFEKRVEDAYKEAFPRLVSGSIDFIEAQEMILKRMSDALITLKNSNKAKNHSNENSR
Ga0256804_1018695	Ga0256804_10186951	F000445	RTRVALPDVLGVLEASGYGVLQLPPPGEHGLLLAVIADQIAEYSHHGYAVVAIGVRGEPGDGLHWRRLVPLLRYRGVALPPRHLIRPNIDAAAEGQRFAVFLSGYDLPVEEQRRWRV
Ga0256804_1019151	Ga0256804_10191511	F060311	MKGPLTGPFFMFADFVVQARSIGYITRMVSKAQRIVLVDHARLPWRFFGRLTAVQAGL
Ga0256804_1020450	Ga0256804_10204501	F054979	MKAMLEAAARQFGVPGEVLDVIDRKWISQVIDEFPSLLLPPIMQTLHREYVKNGLEWIRQNVASLRTQCLLLQKLYGPTWILA
Ga0256804_1023747	Ga0256804_10237471	F060457	DPRTSSSDIGIFLSTIFHIASIACVPFLVNGTVNGNIYTCGLLLVWIIYYSFRLAKSRKLLGLAFFGMALSAVVLGIYNFGLMSQYKNAKRYLGEERTFCQEATYETLLSKYETEKSMISASFRLCLDKEHALPENCIKEVNHATSLNEVMLGNRLLRLSNCANSLTTRQKSVDRLKNNPWVKFWLNFP
Ga0256804_1025148	Ga0256804_10251481	F056714	SVFLLVILILAGPLASFAATLQNTDSQEYELQIQESGRFYGSQYRIVENAKVEICFYGCVMTLVRTGQTVRVNTNDLVVIDEGVMNVHPAVNERGGW
Ga0256804_1025212	Ga0256804_10252122	F080803	RAEEARQAMKEAEAKLKQARSPATPAQPEATEPGVKEPVPA
Ga0256804_1025322	Ga0256804_10253221	F032705	RGEGSVVATLRNMSQMFGNLSRTVSGVDADKRTLYDRYKELTAEARKVAAETEAADVSESDKIRRNNLAFSRILGEINEVLTRMAEASTASYVRVVNQNLGSLTTTTRPGDTNEQKEAIERLSGLKDAAVKVVGQISGGRSAEEDRTVQAFTMIPAARAVWVYKGDVFYAWAGAIALDLIPTIFVILLTLGRPREE
Ga0256804_1025607	Ga0256804_10256071	F071793	MEKRNSNRHKTDQSIVCTFFTSHSCAGTFDGRMQNYCDSGMYAELQSRFKEGTVLLARTTSSDPKESPSKIEEGFRSISLVEVKWSKPLSANGGFWYGTGLKYLTV
Ga0256804_1026203	Ga0256804_10262031	F076225	MKTGRLLKFHRPDGDVHAYFYADADAVRAVLYRMAPGEERGPVHEIRGATSEEVERQVRAWIDSRYPRSS
Ga0256804_1027059	Ga0256804_10270591	F086926	MKIEKIDTQKLEMPYTKPLVTATNNFTVARGLLVTVVTNRGVEGYGYADLFPRSGETAET
Ga0256804_1029552	Ga0256804_10295521	F052804	NRQDAIDNGAVALSSQADVFLRGRLSRPVETETIRTYASKSASREAFEKLCTVEKAKAAVAAEGANVMAVWGTPVECIDKIKFYVDAMHPEQLMLNIASGSLAQDKVLASMRLFSQAVMPALRGR
Ga0256804_1030985	Ga0256804_10309851	F010544	MHEFLRNTLNRQKLQQLFINTALGNFAGYVAGSLVTGVATYHSVERRALKNLFGVLPRHKVVVHVLPEWLEWALSVFVGFLVMELVRYVINRKKYLLLINGAARDEP
Ga0256804_1033341	Ga0256804_10333412	F015034	LKMDSQGAADTYDAFQATLNPTGIPNRAGIDNLVRSLQTQGRFTDRKVAFGEVADDRPATEVAKELGYKLP
Ga0256804_1033540	Ga0256804_10335401	F032451	MMRTDDGRIDHLQRGVGHAASGERFQHHVPDAAVGPPPKLPKDRVPVAEFLRQVAPRRPRSHHPKHGVEQAAMVPWGPPATMDQERLEIRPLIVGYLSANQGCSPQRVAL
Ga0256804_1034030	Ga0256804_10340302	F067864	EYEPNHFKVVGLAGVVLLSGEIERAHRMASRALEDLDGILFVVEEPADSIVVRGSTGTTEFVRTPTICAEIMASSKDAFDRAMAALEEAFPGERVAGKILSEGRP
Ga0256804_1039011	Ga0256804_10390111	F055103	MLTEQTNLASGLRGFWPVLAGHLGHARLVDRIFYWLRRSSPTWLAHNDPEIRVLMKYPG
Ga0256804_1040962	Ga0256804_10409622	F070240	TSSPTPTVDDPWRWTVAVKDAKGKPLVGKVRLQILLGTLVVGCWKGTAMTQCSGATSGTWIAFKGLRTGVLTWPAQSVGVKLTFQAVVAAGGTILRLRAPVTVQPKT

Showing 1 to 43 of 43 entries

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026372: Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 F5

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences