3300026282: Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 1_7/15/2010_ DNA (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026282
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0055735 | Gp0103137 | Ga0209053
• Sample Name: Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 1_7/15/2010_ DNA (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 199334044
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Albitalea → Albitalea terrae	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Bioreactor → Wastewater Treatment → Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.076217
  • Long. (^o): -89.411742
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048673	Metagenome / Metatranscriptome	148	Y
F088925	Metagenome / Metatranscriptome	109	Y
F097376	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209053_1006982	All Organisms → cellular organisms → Bacteria	3216
Ga0209053_1022122	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1358
Ga0209053_1051573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Albitalea → Albitalea terrae	705
Ga0209053_1061832	Not Available	614

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209053_1006982	Ga0209053_10069821	F088925	MQDQKCSKCGSRNVYKNTGKNWCQDGIVLQMIAVDRFTYQFKTEAFLCLDCRYLEIRAAETNTVYGDHKTLIEAVEASNNWAKVSV
Ga0209053_1022122	Ga0209053_10221222	F048673	MRTFAMLLILVAIAASQPHHWLTVLMAAIARCIGR
Ga0209053_1051573	Ga0209053_10515732	F097376	MKKAVSPKKNKTATDVVPQKKQTKTGPVELDLTELKKVSGGLPRGGWEKIK
Ga0209053_1061832	Ga0209053_10618321	F097376	MKKAVTPKNNKTADDVVTQKKQENKSGPVELNLEELKKVSGGLPKGGWRVK