3300026234: Upper troposphere microbial communities from Oklahoma, USA - DC3-110 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026234
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110167 | Gp0085205 | Ga0209028
• Sample Name: Upper troposphere microbial communities from Oklahoma, USA - DC3-110 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 33527485
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Lillamyvirus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Upper Troposphere Microbial Communities Above Oceans And Continental Usa That Affect Ice Or Cloud Condensation Nuclei
• Type: Environmental
• Taxonomy: Environmental → Air → Outdoor Air → Unclassified → Unclassified → Upper Troposphere → Upper Troposphere Microbial Communities Above Oceans And Continental Usa That Affect Ice Or Cloud Condensation Nuclei

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Aerosol (non-saline)

Location Information

• Location: USA: Oklahoma
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051069	Metagenome / Metatranscriptome	144	N
F051119	Metagenome / Metatranscriptome	144	N
F098918	Metagenome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209028_1004704	Not Available	627
Ga0209028_1005917	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Lillamyvirus	558
Ga0209028_1006308	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	541

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209028_1004704	Ga0209028_10047043	F051119	MKISEAFEQLDALRVANALGLEYGVVCKWRDREQIPAYWRCKFVNLMNHHNVAIKLHDLAGWIK
Ga0209028_1005917	Ga0209028_10059172	F098918	NKPNYSKRDFMNATIIFQTALMDKMYDNQDYDKMNIEDRMKMAESCGFALRNLIHTYTGLDTHKIEEFL
Ga0209028_1006308	Ga0209028_10063081	F051069	VLAYAKIENTDENTIIDALITSSREELENLLKIPLITQVWAQTYDSFIEPVYAPMIPITSAALEIADSDGNFSANTYISVKKDTGRIAPTDAFSPSLQFDGFKITFTYTISAIDATLKTAIMELTSYRFYNRGNLEAAKIPASVLSMVGHLRVFSV