Sample 3300026231

Overview

Basic Information
IMG/M Taxon OID	3300026231 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0110167 \| Gp0085196 \| Ga0209546
Sample Name	Upper troposphere microbial communities from California, USA - DAQCA-005 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	41306342
Sequencing Scaffolds	10
Novel Protein Genes	10
Associated Families	8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2
All Organisms → cellular organisms → Bacteria	2
Not Available	1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium B17	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Upper Troposphere Microbial Communities Above Oceans And Continental Usa That Affect Ice Or Cloud Condensation Nuclei
Type	Environmental
Taxonomy	Environmental → Air → Outdoor Air → Unclassified → Unclassified → Upper Troposphere → Upper Troposphere Microbial Communities Above Oceans And Continental Usa That Affect Ice Or Cloud Condensation Nuclei

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Aerosol (non-saline)

Location Information
Location	USA: California
Coordinates	Lat. (^o)	N/A	Long. (^o)	N/A	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F032247	Metagenome / Metatranscriptome	180	Y
F032274	Metagenome / Metatranscriptome	180	Y
F045749	Metagenome / Metatranscriptome	152	Y
F049646	Metagenome / Metatranscriptome	146	Y
F051069	Metagenome / Metatranscriptome	144	N
F055725	Metagenome / Metatranscriptome	138	Y
F077438	Metagenome / Metatranscriptome	117	Y
F103354	Metagenome / Metatranscriptome	101	Y

Scaffold	Taxonomy	Length	IMG/M Link
Ga0209546_1000134	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae	2180	Open in IMG/M
Ga0209546_1000512	All Organisms → Viruses → Predicted Viral	1455	Open in IMG/M
Ga0209546_1001246	All Organisms → Viruses → Predicted Viral	1114	Open in IMG/M
Ga0209546_1001924	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	958	Open in IMG/M
Ga0209546_1003080	All Organisms → cellular organisms → Bacteria	799	Open in IMG/M
Ga0209546_1003276	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	779	Open in IMG/M
Ga0209546_1004251	Not Available	706	Open in IMG/M
Ga0209546_1006141	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium B17	608	Open in IMG/M
Ga0209546_1007647	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	557	Open in IMG/M
Ga0209546_1008115	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0209546_1000134

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae

2180

Open in IMG/M

Ga0209546_1000512

All Organisms → Viruses → Predicted Viral

1455

Open in IMG/M

Ga0209546_1001246

All Organisms → Viruses → Predicted Viral

1114

Open in IMG/M

Ga0209546_1001924

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

958

Open in IMG/M

Ga0209546_1003080

All Organisms → cellular organisms → Bacteria

799

Open in IMG/M

Ga0209546_1003276

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

779

Open in IMG/M

Ga0209546_1004251

Not Available

706

Open in IMG/M

Ga0209546_1006141

All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium B17

608

Open in IMG/M

Ga0209546_1007647

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli

557

Open in IMG/M

Ga0209546_1008115

All Organisms → cellular organisms → Bacteria

544

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0209546_1000134	Ga0209546_10001343	F032247	MTIDDAIYNLEAYGRHMGNRFIAINHDRSYELLLKNAVIILEYAGMIERDTVKAWAHCNVRIINRDAERVDYTTGL
Ga0209546_1000512	Ga0209546_10005121	F032274	MQGFFDFTEQIEIVKHKRHKTLWTPKHDWRVAPKIIVTDEYIALDKKLEPIENELFDLIKQMPLAVEEKIKGKICVVNSGHTVDAELINRVRVLRKEASAIGKQLDELFFRTNKKWALFYDYTDKT
Ga0209546_1001246	Ga0209546_10012462	F049646	MTSKAQKPHYCKTDVISSCDCLVGFLSGEKVNKSTIDYEVERIVNIQPAFKKYGLLNGEPQTKRQIVDGRKGYLSRFVYCPYCGEKLNWKQVLSNCL
Ga0209546_1001924	Ga0209546_10019241	F045749	IKGFLLKYNISDEFKASGRAPDTSSRQAMIQATISPEQCSVEDLINKHECSVVNGRILDVTWLNELCVIDGDMLPPTRTLGHILSDMGYSQIEGRRVKIQKTRENHYIWFKNVAGAASSDVIEQVRDFFKKGLDEVPF
Ga0209546_1003080	Ga0209546_10030801	F077438	STHRVERSFTESRLETLFLWNLQVEISAALRSIVEKEISS
Ga0209546_1003276	Ga0209546_10032761	F045749	TYLLTRAISEDFKASGRAPDTKSRQAMIQATISPEKCSVEDLINKHDCAVVNGRILDVTWLAKLCETEGEILPPTRTLGHILSDMGYQQIENRRVFVKKTDKRHYVWFKPSQKTDSDIAKNEVVDFFKKGLDEIPF
Ga0209546_1004251	Ga0209546_10042511	F055725	MAFFNGCGINLKTITELAAQGLSLNSMSKMTGHSKNGIKAALERNNIPYTMGIRECFITVDGVLTSLGDACNAQGFSRESMYAWRVKRGLNEQDGFDAYIIYQQSKRTIDKPILTFKNTTVIYKKERYTLDAISDKLKLNKQRFEVFMRHNRYGQNAFERYCWTRGL
Ga0209546_1006141	Ga0209546_10061411	F103354	KESLSFASKPAGMAPNRQPIVENDDFVKRMQKIAGII
Ga0209546_1007647	Ga0209546_10076471	F051069	VLAMAYRVSISSTELVTRAEVVAYAKIENTDENSIIDALITSSREELENLLKIPLITQVWAQTYDSFIEPVYAPMIPITSAALEIADSDGNFSANTYISVKKDTGRIAPTDVFSPSLQFDGFKITFTYTVSAIDAALKTAIMELTSYRFYNRGNLEAAKIPASVLSMVGHLRVFSV
Ga0209546_1008115	Ga0209546_10081151	F032247	MTVDDAIHDLEVYGHWMGSRYIAINFDKAHKEVLEKAVAVLDAAGMLERDPHPKWEGCNVRIINKPVPRVDYTTGLXYETV

Scaffold ID

Protein ID

Family

Sequence

Ga0209546_1000134

Ga0209546_10001343

F032247

MTIDDAIYNLEAYGRHMGNRFIAINHDRSYELLLKNAVIILEYAGMIERDTVKAWAHCNVRIINRDAERVDYTTGL

Ga0209546_1000512

Ga0209546_10005121

F032274

MQGFFDFTEQIEIVKHKRHKTLWTPKHDWRVAPKIIVTDEYIALDKKLEPIENELFDLIKQMPLAVEEKIKGKICVVNSGHTVDAELINRVRVLRKEASAIGKQLDELFFRTNKKWALFYDYTDKT

Ga0209546_1001246

Ga0209546_10012462

F049646

MTSKAQKPHYCKTDVISSCDCLVGFLSGEKVNKSTIDYEVERIVNIQPAFKKYGLLNGEPQTKRQIVDGRKGYLSRFVYCPYCGEKLNWKQVLSNCL

Ga0209546_1001924

Ga0209546_10019241

F045749

IKGFLLKYNISDEFKASGRAPDTSSRQAMIQATISPEQCSVEDLINKHECSVVNGRILDVTWLNELCVIDGDMLPPTRTLGHILSDMGYSQIEGRRVKIQKTRENHYIWFKNVAGAASSDVIEQVRDFFKKGLDEVPF

Ga0209546_1003080

Ga0209546_10030801

F077438

STHRVERSFTESRLETLFLWNLQVEISAALRSIVEKEISS

Ga0209546_1003276

Ga0209546_10032761

F045749

TYLLTRAISEDFKASGRAPDTKSRQAMIQATISPEKCSVEDLINKHDCAVVNGRILDVTWLAKLCETEGEILPPTRTLGHILSDMGYQQIENRRVFVKKTDKRHYVWFKPSQKTDSDIAKNEVVDFFKKGLDEIPF

Ga0209546_1004251

Ga0209546_10042511

F055725

MAFFNGCGINLKTITELAAQGLSLNSMSKMTGHSKNGIKAALERNNIPYTMGIRECFITVDGVLTSLGDACNAQGFSRESMYAWRVKRGLNEQDGFDAYIIYQQSKRTIDKPILTFKNTTVIYKKERYTLDAISDKLKLNKQRFEVFMRHNRYGQNAFERYCWTRGL

Ga0209546_1006141

Ga0209546_10061411

F103354

KESLSFASKPAGMAPNRQPIVENDDFVKRMQKIAGII

Ga0209546_1007647

Ga0209546_10076471

F051069

VLAMAYRVSISSTELVTRAEVVAYAKIENTDENSIIDALITSSREELENLLKIPLITQVWAQTYDSFIEPVYAPMIPITSAALEIADSDGNFSANTYISVKKDTGRIAPTDVFSPSLQFDGFKITFTYTVSAIDAALKTAIMELTSYRFYNRGNLEAAKIPASVLSMVGHLRVFSV

Ga0209546_1008115

Ga0209546_10081151

F032247

MTVDDAIHDLEVYGHWMGSRYIAINFDKAHKEVLEKAVAVLDAAGMLERDPHPKWEGCNVRIINKPVPRVDYTTGLXYETV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026231: Upper troposphere microbial communities from California, USA - DAQCA-005 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences