NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026191

3300026191: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF82A (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300026191 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0110190 | Gp0111311 | Ga0208523
Sample NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF82A (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size179072455
Sequencing Scaffolds46
Novel Protein Genes49
Associated Families41

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available37
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Flammeovirgaceae → unclassified Flammeovirgaceae → Flammeovirgaceae bacterium1
All Organisms → cellular organisms → Bacteria1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Ronodorvirus → Prochlorococcus virus PSSM4 → Prochlorococcus phage P-SSM41
All Organisms → cellular organisms → Archaea → Euryarchaeota1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.1
All Organisms → cellular organisms → Archaea1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1
All Organisms → Viruses → environmental samples → uncultured marine virus1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomemarine water bodysea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationPacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000567Metagenome / Metatranscriptome1020Y
F000659Metagenome / Metatranscriptome952Y
F000930Metagenome / Metatranscriptome830Y
F002078Metagenome / Metatranscriptome596Y
F002963Metagenome / Metatranscriptome517Y
F003612Metagenome477Y
F004699Metagenome / Metatranscriptome427Y
F004869Metagenome / Metatranscriptome420Y
F005684Metagenome / Metatranscriptome393Y
F005749Metagenome391Y
F006917Metagenome / Metatranscriptome362Y
F008649Metagenome / Metatranscriptome330Y
F009609Metagenome315Y
F013095Metagenome274Y
F014929Metagenome / Metatranscriptome259Y
F016412Metagenome247Y
F016731Metagenome / Metatranscriptome245Y
F022430Metagenome / Metatranscriptome214Y
F023792Metagenome / Metatranscriptome208Y
F027539Metagenome194Y
F029714Metagenome / Metatranscriptome187Y
F030157Metagenome / Metatranscriptome186Y
F030492Metagenome185Y
F033960Metagenome176Y
F034620Metagenome174Y
F039005Metagenome / Metatranscriptome164Y
F040064Metagenome / Metatranscriptome162N
F040143Metagenome162Y
F040845Metagenome / Metatranscriptome161N
F050924Metagenome144Y
F052648Metagenome / Metatranscriptome142Y
F057124Metagenome / Metatranscriptome136Y
F073670Metagenome120N
F075728Metagenome118Y
F077779Metagenome117Y
F077788Metagenome117N
F089413Metagenome109N
F089914Metagenome / Metatranscriptome108N
F090485Metagenome / Metatranscriptome108N
F095624Metagenome105N
F101337Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0208523_1008806Not Available1357Open in IMG/M
Ga0208523_1016984Not Available942Open in IMG/M
Ga0208523_1017795All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Flammeovirgaceae → unclassified Flammeovirgaceae → Flammeovirgaceae bacterium919Open in IMG/M
Ga0208523_1019647Not Available871Open in IMG/M
Ga0208523_1020334Not Available856Open in IMG/M
Ga0208523_1020655Not Available848Open in IMG/M
Ga0208523_1020916Not Available842Open in IMG/M
Ga0208523_1021601All Organisms → cellular organisms → Bacteria828Open in IMG/M
Ga0208523_1024304Not Available777Open in IMG/M
Ga0208523_1024583Not Available772Open in IMG/M
Ga0208523_1028865Not Available711Open in IMG/M
Ga0208523_1029680Not Available701Open in IMG/M
Ga0208523_1032015All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Ronodorvirus → Prochlorococcus virus PSSM4 → Prochlorococcus phage P-SSM4674Open in IMG/M
Ga0208523_1033222All Organisms → cellular organisms → Archaea → Euryarchaeota663Open in IMG/M
Ga0208523_1033720Not Available657Open in IMG/M
Ga0208523_1033722Not Available657Open in IMG/M
Ga0208523_1035404Not Available641Open in IMG/M
Ga0208523_1036371Not Available633Open in IMG/M
Ga0208523_1036627Not Available631Open in IMG/M
Ga0208523_1041063Not Available596Open in IMG/M
Ga0208523_1041258Not Available594Open in IMG/M
Ga0208523_1041977Not Available589Open in IMG/M
Ga0208523_1042402All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon586Open in IMG/M
Ga0208523_1042980Not Available582Open in IMG/M
Ga0208523_1044155Not Available575Open in IMG/M
Ga0208523_1045149Not Available569Open in IMG/M
Ga0208523_1045657Not Available565Open in IMG/M
Ga0208523_1045739Not Available565Open in IMG/M
Ga0208523_1046363Not Available561Open in IMG/M
Ga0208523_1047168Not Available557Open in IMG/M
Ga0208523_1047619Not Available554Open in IMG/M
Ga0208523_1049240Not Available545Open in IMG/M
Ga0208523_1049657Not Available543Open in IMG/M
Ga0208523_1049935Not Available541Open in IMG/M
Ga0208523_1050111Not Available540Open in IMG/M
Ga0208523_1051713Not Available532Open in IMG/M
Ga0208523_1053219All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.525Open in IMG/M
Ga0208523_1054204All Organisms → cellular organisms → Archaea521Open in IMG/M
Ga0208523_1056284Not Available512Open in IMG/M
Ga0208523_1056772All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium510Open in IMG/M
Ga0208523_1057268Not Available508Open in IMG/M
Ga0208523_1057323Not Available508Open in IMG/M
Ga0208523_1057962All Organisms → Viruses → environmental samples → uncultured marine virus505Open in IMG/M
Ga0208523_1057965Not Available505Open in IMG/M
Ga0208523_1059061Not Available501Open in IMG/M
Ga0208523_1059114Not Available501Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0208523_1008806Ga0208523_10088062F000659VKTFSQYLEEANSKYIVSKNPSDKKWYAMGHVGNNKWMPVSTGFKNKAQAQKWAKSQDKVDIAARGEISGA
Ga0208523_1016984Ga0208523_10169841F034620IDWYYGDTNHGATIYCLENDLKYLHLGPYYDNPNWETEDTLHTYFYKDEPFLTHLKGGFSENKMSSKDFEEEFNAYLKELRNAK
Ga0208523_1017795Ga0208523_10177952F005749MKKKSWLLMMSFDEHDGSRNEIKTLYHGKTKRNMVKTMDLFQDMNEHLVLALVEVDKKSTYDKIVDKEGSEEMFFMDSKRNWNNGKTYEDLKEEALEEMLMGSLIKGDMGYA
Ga0208523_1019647Ga0208523_10196471F002963MYIGLGLIVGGFCLFLYSQHRLRQLDIEEWKNQQLTESFNKAKRGE
Ga0208523_1020334Ga0208523_10203341F000567MKETLLKLTQKITTWHERMFRYLTLKSKTSVFFSWLLVFICLYEILEHIII
Ga0208523_1020655Ga0208523_10206553F029714MSKDMGIEDIKSYLRGKEQHPIMHVRDSKDPDYITMRKFVQDIVPETEDYMSAVAEQLNKVMSSLRHMEPNDYNKIVHTFRKYEVKGESAGIRGRKTYGYDRSRVDGAMIRRKRGN
Ga0208523_1020916Ga0208523_10209162F013095MNKMTPIIPIKLPMNSTVSLTSPTSGAQKTAIKKPVTIIGIPIPTVICFDAILSITAKIVYEVYDEI
Ga0208523_1021601Ga0208523_10216013F040845DNVELGKVYTDIDRPPFKTESTIDEKMSDEKRLFLMLRIYGDSWKVNLGKVFSGINRGKPTLIKKGLKEIKILNKKIEEMIEELI
Ga0208523_1024304Ga0208523_10243041F023792MWISGKQLRHAWHQTKKFVRGTYHEGRKWASTIDGYAQLFRRGLSAAAPMLQDLGAGEALGSGVKALQSYDTVRKQVMDVDDKGRSHYDRIAQAIT
Ga0208523_1024583Ga0208523_10245832F023792MWITGKHIGNAWMQTRKFIKSTYHEGRKWANMIDGYASLFRRGLSAAAPMLQDLGAGEALGSGVKALQSYDTVRKHVMDVDERGREHVGRIARAIT
Ga0208523_1024583Ga0208523_10245833F039005MHKQTLGGTIYSGLQKGLHVGQKTVEYTALAKGMYEAGKTLFSVGRAVGPMVAALL
Ga0208523_1024599Ga0208523_10245992F004699MNGQIYALRIKLSDFINDPLEHLVVDKIHEIYKVHTFKLQLWYDDNEVTAKDLKSFIEKYESILHYKTTIRPNRVADHAQFTWYNIVHDEDKDVKYPCRFQYEHDIGWRLSGVLNGLEQFSDCLKFVTSPKPPRQEKPMKRKQKRNDYED
Ga0208523_1028865Ga0208523_10288652F077779TTIRPNRVADHAQFTWYNIIHGDDKDLYYPCRFQYEHDIGWRLSGVLKGLEQFRDCLKFVTSPKPPRQEKQIKRKQKRNDYED
Ga0208523_1029680Ga0208523_10296802F040143MSYIHMREEWKLFTGWLILVILLLLSGCTNAPNGAINIPYTPPIRYELIEPLGTKHLYKKEPLVDKSYYCLNHEVPEIIWEREGIKRVRTYTGPKFR
Ga0208523_1032015Ga0208523_10320152F004869MTCGREHYYAVQSFLNDKELTEVWDIVEKAMNRQGYDVSNSELSLRLYDDELEEDIEYDMEEYLSSQSEGKDYGSKVDALVDSMGVTDEKVSPIHRRKDMDLL
Ga0208523_1033222Ga0208523_10332222F005684LLTVYDTEESPLSAMQVVRRKSEVREGRLCNRNEPRQAHYEPERERFPDRGWNEHPHRSKSKQVRIASTGPGRMHS
Ga0208523_1033720Ga0208523_10337202F039005MHKQTLGGSIYSGLQKGLHVGQKAVEYTALAKGIYETGQTLFSIGRTVVPMAAALL
Ga0208523_1033720Ga0208523_10337203F023792MWITGKQIGNAWRQTRGFLKSTYHEGKKWANMIDGYASLFRKGLSAAAPMLQDLGAGEALGSGVKALQSYDTVRRQVMDVDERGREHVGRIARAIT
Ga0208523_1033722Ga0208523_10337222F077788KTDKSVGYHPGQLVKFFNPFKEPYEEQIAEGIITSVDHWSQTLTVGIGKAQAQEAEWFVGGHQVVKMNNPHIEVVPDKVTQISNVKDV
Ga0208523_1035404Ga0208523_10354043F089413MRNTTQEHIRNQGIAIAEVRGALQILAQTNLVGKENIQERLKHWEAKLTDIQNKLTEIEWSESIEWLEDKAGIEAXQKPKI
Ga0208523_1036371Ga0208523_10363712F089914MLNRFLPYEKRRAAAAMGFGLASSSENGADHLARTVAANGGEQRVVWRPLSSGILNCGKLFPGMLLGASGLKITLEVPAASEIGRDHATDSQTFSYKDLVCHIDSLQLEESISSQYANMLLSGRSIMIPYQTWDNTLQHLTVQTGSQTCNVAKNFTRLASVFASLAQEEPTVTADLA
Ga0208523_1036627Ga0208523_10366272F101337MIVSLILGLVVFAVICLWVLIEERKSPKFLVWFIPLFLVLVSSTYVTYTSILGYPRVAKPKEGLYLKHYIDEPDWVYIWVLSEDNIPMGYKLVYSRAVHNSLLGVQGKANEGKFMVLGEDENAMGSIGEQEEQGEESRGGFTVGGDISFYEW
Ga0208523_1041063Ga0208523_10410632F073670KIGENQPKTDNFIQFAYEGVMYFIWIDSSDPTENIAWWSDTTFEDWVSDTVALRLAAQQNPSETFFYCVGFDYYHDQTKDGIFLGSSITEFHDENQDSWIGQHKHIEEEYPNSKFIFVGKDMDYGEFENLLNK
Ga0208523_1041258Ga0208523_10412581F050924YKDLVCHVDSLQLEESISSQYANMLLSGRSIMIPYQTWDNTLQHLTVTSGSQTCNVAKNFTRLATVFTSLAQEEPTVTADLAGVQGKLQNNFYLCDQTAANGDVESYITINNKRMPDFNTIGTQMHMKRLLSAMGTYSSVAHGSNINDVAYGCVKGTAAKSWVMASDLEKAAHHGASSSGESLATGGILSVNLLKVGS
Ga0208523_1041977Ga0208523_10419772F000659MKKFSQYLEEANSKYIVSKNPSDKKWYVMGHIGNNKWMPVSNGFKDKTQAQKWAKSQDKVDSAARREI
Ga0208523_1042402Ga0208523_10424021F006917MKINTEKFIENLHKEINRRNVRKNRILNTIYLMGVY
Ga0208523_1042980Ga0208523_10429801F050924TCNVAKNFTRLATVFTSLAQEEPTVTADLAGVQGKLQNQFYLCDQSAANGDVESYITINNKRMPDFNTIGCQMHLKRLLAACGVYSSIAHGSNINDVAYGCVKGTAAKSWVAAFDLEKAAHHGASSSGESLATGGILSINLQKVGSAAASPSRAYINCLYDCVAELKDSGCFVYS
Ga0208523_1044155Ga0208523_10441551F014929MPKKLNKPDHKYNEKLAKIRRANVERHAGYENTLKLRQNIQRFQRNATYDMELQKLRSATAQGHVAAHAHKRVADLKNILGK
Ga0208523_1045149Ga0208523_10451491F057124LPAYIEGDDCYDIIGFASPYKITGNSTTPITGAGHINVMPYHNLFLHSSLGLQGDCIGPDDSQSIIRRVVLDTAPGTMVNDFHSLPYDYISIQPSQIRNLSFRLADYKGRTVDLQHQGFSFSLLFVPEDEF
Ga0208523_1045657Ga0208523_10456572F027539MNLTWFYFHCVLAMVILVKDYNGTLEDSLDRFEKSIGLYSEPDTTDTEIPPFYVPPTEQDSTWILPPIDGIDISVDSNIVKV
Ga0208523_1045739Ga0208523_10457392F008649MKENLKVKENKMTNLETLMLDVTNTLNHNGFDEVKAVPNNTQFSIRVGYWERIPTSLRETMEEYHNIRITEYDWEDEDCGTLYRYLVEVVDEDCGYTIDELNELDSYTEEAMYLESVGIGADAEWGVA
Ga0208523_1046363Ga0208523_10463631F075728MWQKHFQDARHQGKRTIGHMWKHAVKFAGDLDYTMNAMNVGKRLFGVLHPMIEDMGGSGVNRAIMGGIGRYEQGRDQVMGQHNNVQAQLSRIRRAVPEIGL
Ga0208523_1047168Ga0208523_10471681F003612MATPNNFKVTNAIGSTDNYAGAEVKFFHITLVEADSSALDIRTELGYDETMHNLIRTILLRGTILYQRIDDASSGRMDVSMERPGWTAATLQTAIRDMGTTVGVNNTDVSLSVVAQTELKLDNS
Ga0208523_1047619Ga0208523_10476191F000930VIRWQTDGTEEIWEAPQKPTFQQMYKLINCTTIERQSGYDKEISNRTFDMWMDEESKMKGGEFIKKNERATNAWYTWMNRTGHVNMPGDFIAGNVIVYKKI
Ga0208523_1049240Ga0208523_10492401F022430MSDYIYENRQLSLWDEYKTLKGTLSMDAFMERHYKVNAYIVNLMKKEGPLPDSIDRSESAKRFAEMDLVQMGD
Ga0208523_1049657Ga0208523_10496571F016412EKVSNEPIIIEDTFNEYPLTAWHDTDKKGDVVKIKYRVYHSDTFIEVVNDEGKVVHKQPFQRSPWDDGRARDFTYNWMLYYTQDYGDEIPPGEYEIRVCHKYSRNIDLSTWITI
Ga0208523_1049935Ga0208523_10499351F057124DANSYSCTFSSSTGKLTISNTTASPADFSIWTADYLKHGLWNPLNLASIPAYIEGDDCYDVIGFASPYKITGNSTTPITGEGHISVMPYHTLFLHSDLGLQGDALGPDNSSSIVRKIVLETGPGTQVNDFHSLPYDFVSVQPSQIRNIHFRLADYRGRTVDMLHTGLSFSLLFVPEDEF
Ga0208523_1050111Ga0208523_10501112F033960MDKILNXQKTKLIFIKMKEYEATYTNESPQEYPNGKVTLHRRNTDARVKHPVPMGTYHIMNWHTYSDIGQDLETVQVWNPITKRLFEIYSTDEGETFTFDLQEA
Ga0208523_1051713Ga0208523_10517131F052648LTGNFQKTNKPNTINIKENTADTTGLLILRSVINIIN
Ga0208523_1053219Ga0208523_10532191F030492MAYSYSDWNDKQGTIPVQWLDTDYTTLPWRINPDKNQGFTTPKKNYDIYGKRVGCLTPVFEEIGKGVFVPKDVDKIFGYILDHFNLTDSVYAFAKYTPGLILPWHRDNYPTYAKNKNAKVEDIVRVMIFLHDPAPGHQLWIENRYC
Ga0208523_1054204Ga0208523_10542041F040064IMDNKTARKKIKELRKLLEDYPEATLCIDSEPEVEPDGFHGRSYSAYLADTESEVEPDDSKCQCEEVKTYGMVCVTCGKPYVMKTRFTVNGSAGEWNGSN
Ga0208523_1056284Ga0208523_10562842F014929MPKKLDKLDHKYNEKLAKIRKNNVERHAGYENTLKLRANIQRFQRNATYDMELQRLRGATAQGHIA
Ga0208523_1056772Ga0208523_10567722F095624MTLQEVLDRVNDIIDNHNHHELELLRSDLEDDIIWENKMRKYKKDN
Ga0208523_1057268Ga0208523_10572682F009609MNIQGKKAKVTKTITSVNGALHEGEIILVERRENGHWRCRDNMGRIFYMEESNLKVVKK
Ga0208523_1057323Ga0208523_10573231F090485MSEVSDLEIGKLIQKVDSLETMVREQNDRLDRLDQQLERTRGIGIG
Ga0208523_1057962Ga0208523_10579621F002078VDIAAMFEGQGWFAIAGQIVLVFTAITGALPDRFVQKIPVLGTLWPIFNWLAGNVFNNINHPKGMAAQNEVEKEIDAAKAKVRDRSGMPDVLDGM
Ga0208523_1057965Ga0208523_10579652F016731MGMAISLILTSCAKHNKDDKTHNDLGSGDKSNLPVSLTSLIEHAELCKAIYDLGGDQKDEIAFEVKQDNGISII
Ga0208523_1059061Ga0208523_10590611F023792MWITGKQIGNAWRQIRGFLKSTYHEGRKWANMIDGYASLFRKGLSAAAPMLQDLGAGDALGSGVKALQSYDTVRKQVMDVDERGREHMGRIARAIT
Ga0208523_1059114Ga0208523_10591142F030157THPYASAATAGLHMIKEAIENQGVNILGNGVITAAHEHTFMVRRDSLDTISSTTTVAAIQAALRALDALTPDKITLTMTSVTAADRDMGKLTAMA

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