Basic Information | |
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IMG/M Taxon OID | 3300026144 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0114514 | Gp0125945 | Ga0209954 |
Sample Name | Soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_A_D2_MG (SPAdes) |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 218009731 |
Sequencing Scaffolds | 12 |
Novel Protein Genes | 15 |
Associated Families | 13 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus | 3 |
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis | 1 |
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium | 1 |
Not Available | 4 |
All Organisms → cellular organisms → Bacteria | 1 |
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon | 1 |
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus adriaticus | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration. |
Type | Environmental |
Taxonomy | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration. |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | terrestrial biome → wetland area → soil |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
Location Information | ||||||||
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Location | South San Francisco, USA | |||||||
Coordinates | Lat. (o) | 37.4962 | Long. (o) | -122.1329 | Alt. (m) | N/A | Depth (m) | 0 |
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