3300026104: Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3611_800 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026104
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114292 | Gp0127549 | Ga0208452
• Sample Name: Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3611_800 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 108575128
• Sequencing Scaffolds: 6
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan	1
All Organisms → cellular organisms → Bacteria	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Southern Atlantic ocean
• Coordinates
  • Lat. (^o): 0.0014
  • Long. (^o): -33.4979
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000021	Metagenome / Metatranscriptome	6082	Y
F000052	Metagenome / Metatranscriptome	3223	Y
F000786	Metagenome / Metatranscriptome	891	Y
F000879	Metagenome / Metatranscriptome	850	Y
F010519	Metagenome / Metatranscriptome	302	Y
F059484	Metagenome / Metatranscriptome	134	N
F077438	Metagenome / Metatranscriptome	117	Y
F077781	Metagenome / Metatranscriptome	117	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208452_1004869	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	1039
Ga0208452_1005459	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	996
Ga0208452_1008753	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan	833
Ga0208452_1012028	All Organisms → cellular organisms → Bacteria	734
Ga0208452_1017660	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	631
Ga0208452_1025271	Not Available	546

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208452_1001546	Ga0208452_10015461	F000021	LFKEFQISASYEGLVETVPGVKQDLLKMDTYKMDMTKDALFRGEFEVVKELMATLKDGEAAKDICDKVIDKNGTKKTGGTGIKQLRENIAESKLSYEIMDEAAQAFLKSKIMDNIHKYFYLIIFSAYMREAAQKARDMYAEEEKEAVVLTSGKCSIPANKLKLPRTFVQFMEENAGLRTMIDTGKGNLQWERDIPPEALANLEGLVAKDFQGNLGKIIHDIYQTAHVMFSDMPLGDHKKRAKYRFASKTLMRNLPAGKKTEVEGLIAKSEMTMDLYEILGKCTWTQPK
Ga0208452_1004869	Ga0208452_10048691	F010519	LIWSRGRSIGYWLNFMGILSVSVVDFFANLLGKSKFDSLASRSSKLSDALLRALSRVLNFWDGDAFLFGEVLTADSWERDRLVDTGLDGFRIGNLNSGLNRGDDRNIVASLLGNLLAVVVSVAVISVSWGWLADCDHLGVTLLLECNFNCLGSGGFSLLLVGVGTDFIFNLLNAFSADSAGDWVTLFSVNDDLDGKFDWVANSLKGWGADLGSFNNILN
Ga0208452_1005459	Ga0208452_10054591	F000879	VCSVLAAVSADPQVILGGLGYPYALGSPLTYTPHVVKPVVKEIEVPVKTITYGIKETGCKNSFGFSVPCFAEGEARRKREAEEEKAVAAPVVTYAAGVPFGYGYGLGLGLPYTYAAAPAITVAEPKVTEVEVPQFVYKAVEEKIDLAPLCHNGFGFPVPCA
Ga0208452_1008753	Ga0208452_10087531	F077781	SAHLKAPAAVTGGWGSPRQNDFFILLTLESPAPCDPLQAESHLVFRTRIHSQVQWGDVRGVAGRTKDSLPSDSVCTVGPRAGALSVRTADSLYLGFPRPHPGTPGLGRFWPFLALQSLSETPSHARMPRVTVARTSPETLEISPLRAAT
Ga0208452_1012028	Ga0208452_10120281	F077438	RVEPSFIQSSFEKHFLWNLQVEISSDLTPILDMEISSY
Ga0208452_1017660	Ga0208452_10176601	F000786	MSLSEVESDLPEDIKERALSCFRAAISDKCTIQQAIEKVQKDALSEVETRFKGQRFKVNNFTSQKHDLILTKGFIKFDYNTNVITINVNKFGNGNAQFSVGMGVKKMVCPDPFMGKLSDPNMNR
Ga0208452_1025271	Ga0208452_10252711	F059484	LWVHEPDTFFLEAAREISEKWNFFVKRSVPENFQRENFPGQVPTESLRTQDSENVYERWVQQIFDYVLVARS
Ga0208452_1028320	Ga0208452_10283201	F000052	IFCSTDFRSLNIAILYKGCPTHSYSFILVKDCDIQGPEICRTEYESECWTKQEVHDVEDDVVECKTEVEEKCEDETSGYTTNTKCSKWPKEVCTVSKKPVKKFTPITGCTKEPREICAPAGCGFKEGAEECYDKKQTVVQDAPKEQCSLEPQRTCKHVTKLVPKLSPTEECVD