Basic Information | |
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IMG/M Taxon OID | 3300026039 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0111376 | Gp0116083 | Ga0208288 |
Sample Name | Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_TuleB_D1 (SPAdes) |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 77031072 |
Sequencing Scaffolds | 7 |
Novel Protein Genes | 7 |
Associated Families | 7 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1 |
Not Available | 5 |
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp. | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration |
Type | Environmental |
Taxonomy | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | terrestrial biome → wetland area → soil |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
Location Information | ||||||||
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Location | USA: Antioch, San Francisco Bay, California | |||||||
Coordinates | Lat. (o) | 38.052509 | Long. (o) | -121.76873 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F040697 | Metagenome / Metatranscriptome | 161 | Y |
F050777 | Metagenome / Metatranscriptome | 145 | N |
F057298 | Metagenome | 136 | Y |
F069503 | Metagenome | 124 | Y |
F069913 | Metagenome / Metatranscriptome | 123 | Y |
F090409 | Metagenome | 108 | Y |
F104554 | Metagenome | 100 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
---|---|---|---|
Ga0208288_1000815 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 2405 | Open in IMG/M |
Ga0208288_1009375 | Not Available | 911 | Open in IMG/M |
Ga0208288_1016802 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp. | 709 | Open in IMG/M |
Ga0208288_1017565 | Not Available | 696 | Open in IMG/M |
Ga0208288_1017662 | Not Available | 694 | Open in IMG/M |
Ga0208288_1023313 | Not Available | 615 | Open in IMG/M |
Ga0208288_1024482 | Not Available | 602 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0208288_1000815 | Ga0208288_10008152 | F069913 | MTIEEYNLLEQEFSTSETDIKTFLLTKGVSLHKYYYWKRKSRDLQEASSQSEGQFLPINVLCGGSIKPGKRGKNLKQPFISQGEIEIELRTPSGAELRIRGMMDSLMVSTIIASSGGRRN |
Ga0208288_1009375 | Ga0208288_10093752 | F069503 | MDATRLRFTLRPLFKGAYTQIRLQGPVATVPQPREVRRLMALLWLWHGRPLDVVLCADVTSTGACWLEIWEDVLGRVPGHHLDMRYLQLPKTLVHGARP |
Ga0208288_1016802 | Ga0208288_10168022 | F040697 | MRLTENLEECEIIDDILREAAEGYGDLTAAALVHKVDVKYLQTRVVELRDLRAAWIS |
Ga0208288_1017565 | Ga0208288_10175651 | F057298 | KNTSYKVQVDVDTDAIRNAYQIEEGAYVTTSSGVYTVWNGEWRKLYPQGGSESSLGWARYDDSTYTSSNKLALSDGVEVVLPNDADTIYRSHTGIDYYSDGKVLADFENDTYLMTIVFKYSAPNANQTYLEMHFEGGNGTPYDRIRDTVTFAKGNDVAHDYHGIFQYYADENFVNSGSEWKITSIGGGSFIWDIIFFIQKVQNYG |
Ga0208288_1017662 | Ga0208288_10176621 | F050777 | MEDDIIYEKAVEIQNPGRLYFAIKAMRKSPVKISFDMGDLNLTSGAVSSLVSIEGKLPEEVQAMQWFVPLEDLKILQDLIPQDTYYWENRALDLEWQCDLFVDSTIEEKTPLESLEQEDEHRDQLLVANRDYRELQMALDDCSAHIPQVLFSIYPDRLNFAVNCSEHDEIVGTMIQLRSQKDK |
Ga0208288_1023313 | Ga0208288_10233131 | F090409 | LAKGRSNGGGRMRKEFAGTLLTSFGMMGTVHFNLEMPGSIIGDTNQFLEEAKGKRVLVTVETQEVAA |
Ga0208288_1024482 | Ga0208288_10244822 | F104554 | MSTFPEIESELNRKRVVAEMDALRLEEEAVKGKTLLDKNLALLGNLMVSAGEKLRRRYRSSQEANSVKLVNKVV |
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