Sample 3300026018

Overview

Basic Information
IMG/M Taxon OID	3300026018 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111376 \| Gp0116068 \| Ga0208418
Sample Name	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D1 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	87424137
Sequencing Scaffolds	27
Novel Protein Genes	30
Associated Families	30

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → FCB group	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	4
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1
All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	1
Not Available	5
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → wetland area → soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	USA: Browns Island, San Francisco Bay, California
Coordinates	Lat. (^o)	38.04565	Long. (^o)	-121.866287	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F002508	Metagenome / Metatranscriptome	553	Y
F005282	Metagenome / Metatranscriptome	406	Y
F005521	Metagenome / Metatranscriptome	398	Y
F007217	Metagenome / Metatranscriptome	355	Y
F007538	Metagenome / Metatranscriptome	349	Y
F009828	Metagenome	312	Y
F010820	Metagenome	298	Y
F012468	Metagenome / Metatranscriptome	280	Y
F013901	Metagenome / Metatranscriptome	267	Y
F015459	Metagenome / Metatranscriptome	254	Y
F022453	Metagenome / Metatranscriptome	214	Y
F023728	Metagenome / Metatranscriptome	209	Y
F026445	Metagenome / Metatranscriptome	198	Y
F026515	Metagenome / Metatranscriptome	197	Y
F039851	Metagenome / Metatranscriptome	163	Y
F040716	Metagenome	161	Y
F048814	Metagenome / Metatranscriptome	147	Y
F053348	Metagenome / Metatranscriptome	141	Y
F056196	Metagenome	138	Y
F060669	Metagenome / Metatranscriptome	132	N
F062205	Metagenome / Metatranscriptome	131	Y
F064146	Metagenome / Metatranscriptome	129	N
F067711	Metagenome / Metatranscriptome	125	Y
F069120	Metagenome	124	Y
F078867	Metagenome / Metatranscriptome	116	Y
F084442	Metagenome / Metatranscriptome	112	Y
F088476	Metagenome	109	Y
F089452	Metagenome / Metatranscriptome	109	Y
F103852	Metagenome / Metatranscriptome	101	Y
F103864	Metagenome / Metatranscriptome	101	Y

Family

Category

Number of Sequences

3D Structure?

F002508

Metagenome / Metatranscriptome

553

F005282

Metagenome / Metatranscriptome

406

F005521

Metagenome / Metatranscriptome

398

F007217

Metagenome / Metatranscriptome

355

F007538

Metagenome / Metatranscriptome

349

F009828

Metagenome

312

F010820

Metagenome

298

F012468

Metagenome / Metatranscriptome

280

F013901

Metagenome / Metatranscriptome

267

F015459

Metagenome / Metatranscriptome

254

F022453

Metagenome / Metatranscriptome

214

F023728

Metagenome / Metatranscriptome

209

F026445

Metagenome / Metatranscriptome

198

F026515

Metagenome / Metatranscriptome

197

F039851

Metagenome / Metatranscriptome

163

F040716

Metagenome

161

F048814

Metagenome / Metatranscriptome

147

F053348

Metagenome / Metatranscriptome

141

F056196

Metagenome

138

F060669

Metagenome / Metatranscriptome

132

F062205

Metagenome / Metatranscriptome

131

F064146

Metagenome / Metatranscriptome

129

F067711

Metagenome / Metatranscriptome

125

F069120

Metagenome

124

F078867

Metagenome / Metatranscriptome

116

F084442

Metagenome / Metatranscriptome

112

F088476

Metagenome

109

F089452

Metagenome / Metatranscriptome

109

F103852

Metagenome / Metatranscriptome

101

F103864

Metagenome / Metatranscriptome

101

Scaffold	Taxonomy	Length	IMG/M Link
Ga0208418_1003358	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1465	Open in IMG/M
Ga0208418_1004617	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1280	Open in IMG/M
Ga0208418_1006056	All Organisms → cellular organisms → Bacteria	1140	Open in IMG/M
Ga0208418_1007551	All Organisms → cellular organisms → Bacteria → FCB group	1035	Open in IMG/M
Ga0208418_1008154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1001	Open in IMG/M
Ga0208418_1009729	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	928	Open in IMG/M
Ga0208418_1012562	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	830	Open in IMG/M
Ga0208418_1013501	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	806	Open in IMG/M
Ga0208418_1017221	All Organisms → cellular organisms → Bacteria	726	Open in IMG/M
Ga0208418_1021044	Not Available	665	Open in IMG/M
Ga0208418_1022162	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	650	Open in IMG/M
Ga0208418_1022844	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
Ga0208418_1023092	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	639	Open in IMG/M
Ga0208418_1023965	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
Ga0208418_1025349	Not Available	614	Open in IMG/M
Ga0208418_1026070	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	607	Open in IMG/M
Ga0208418_1027764	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	591	Open in IMG/M
Ga0208418_1031011	All Organisms → cellular organisms → Bacteria → Proteobacteria	565	Open in IMG/M
Ga0208418_1032612	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	552	Open in IMG/M
Ga0208418_1032777	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	551	Open in IMG/M
Ga0208418_1033547	Not Available	546	Open in IMG/M
Ga0208418_1034762	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	538	Open in IMG/M
Ga0208418_1036062	Not Available	530	Open in IMG/M
Ga0208418_1036212	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	529	Open in IMG/M
Ga0208418_1036949	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	525	Open in IMG/M
Ga0208418_1039262	Not Available	512	Open in IMG/M
Ga0208418_1040884	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	503	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0208418_1003358

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi

1465

Open in IMG/M

Ga0208418_1004617

All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes

1280

Open in IMG/M

Ga0208418_1006056

All Organisms → cellular organisms → Bacteria

1140

Open in IMG/M

Ga0208418_1007551

All Organisms → cellular organisms → Bacteria → FCB group

1035

Open in IMG/M

Ga0208418_1008154

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium

1001

Open in IMG/M

Ga0208418_1009729

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium

928

Open in IMG/M

Ga0208418_1012562

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis

830

Open in IMG/M

Ga0208418_1013501

All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira

806

Open in IMG/M

Ga0208418_1017221

All Organisms → cellular organisms → Bacteria

726

Open in IMG/M

Ga0208418_1021044

Not Available

665

650

All Organisms → cellular organisms → Bacteria

642

Open in IMG/M

Ga0208418_1023092

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria

639

Open in IMG/M

Ga0208418_1023965

All Organisms → cellular organisms → Bacteria

629

Open in IMG/M

Ga0208418_1025349

Not Available

614

Open in IMG/M

Ga0208418_1026070

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1

607

591

All Organisms → cellular organisms → Bacteria → Proteobacteria

565

Open in IMG/M

Ga0208418_1032612

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria

552

Open in IMG/M

Ga0208418_1032777

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

551

Open in IMG/M

Ga0208418_1033547

Not Available

546

Open in IMG/M

Ga0208418_1034762

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis

538

Open in IMG/M

Ga0208418_1036062

Not Available

530

Open in IMG/M

Ga0208418_1036212

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria

529

525

Not Available

512

Open in IMG/M

Ga0208418_1040884

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria

503

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0208418_1003358	Ga0208418_10033581	F026445	MNIDETKPNRQNRTITLHLGNTLAEYESTYLSETGLAALIRRVEIADSLDWGCLANGHEMGCPRQLHFTHHNSYRRWAKHFNGNQSWVVIYRVRCLDCGAVFSVQPSFIIRYKRYETDATEKLMTLLFITEDSYRMAGVSQTLAVDKQQAGSWMALETHQDQAIQPMALWRLVQWLGQLSPAQLNLALGVDPPTHIIEDEKHASQAEQKSYIPMVYAPKEALIWWVDYLHSASEAELTASLQRFQALSARLTTLTGATVDGWEAAHNALQATFKGITLAECHFHALHKLGQHLATYKRQRQKVGQPLTETEEITIRAAFWRVLKATSPEQYQQALEQLPEVFDQEPLASRKQSLLEKQALFQAWTTDQNLAVVTTALDQCMKFLNRKLENMQTFHTKSSGLATINAWAITRNCWRFLKGAKRAGLSPLELAGADFLAIPWLQWVNLLLSAWASLPSSAQALQLST
Ga0208418_1004617	Ga0208418_10046172	F007217	MPYDLRHADVRVKWLVTCLLATFGIAYAFGAWMVTLYAGFRPATVAAT
Ga0208418_1005748	Ga0208418_10057481	F015459	YAAVARAGPGGRRARWFVPLTLQFAAQALRDPLLRRRLAVVLSEAPDGGTPEGRLLAALAGVLPGPQPGGPAGS
Ga0208418_1006056	Ga0208418_10060561	F007538	HEVAPTLYYRWKDEMEKGALAALGGKSAAAQPADEQGKRIKQLERALGRSHLQIEILKNVLGE
Ga0208418_1007551	Ga0208418_10075513	F062205	VSGTLPTWRTLPPSARLLGKWVTIVQLVGYSTSLVFVWHTTRLVPAGV
Ga0208418_1008154	Ga0208418_10081541	F023728	MSLVSVGAEEERFLRSLLALLKSYLEPSWCIAARLGDLPDALLVDMDTAEGRHVWEGVDFGGTPRIALSRDRVLTAEWTLLKPVRPGGAHSLTEVLTAVAGKVQLLAPTGSVAASKLRPFAHLVRKACGHSSAADVVLATGSVLV
Ga0208418_1009491	Ga0208418_10094912	F103852	VHSFAGLPEHRMVPSPSQPESMRFIETVSVFIRQKTG
Ga0208418_1009729	Ga0208418_10097291	F064146	APIWDTKAMAIKTLAAGLGLALVFAGTGPALAQSGVEVETMAPPPPKFEIIRPEAPGSEPNRPSDADFYSTFGDPVVNYDPAFIAPFTKETETGRMGLAGWTSPVGVVTGDGPMNTRQPGWLSFGFAITWGGPPHKPAPTPVSAPR
Ga0208418_1012562	Ga0208418_10125621	F013901	MKTASHCMPEVCPEASATPQLVEIEVMPTHPLLVLQRALPWEAIIEAMTRHWREHGKNVDGGPGLPWDVSLYVPLVVLMLIKTFDSRQMEAYLAENVVARLFVGCHQHVQAQIRDHSNIARAYAALGKAGIDEVTHLVIKQAHGFGFVDEGVVSADTTAQELAIGYPNEPGILRGLAQRCGRALMRLKKRGVQGLEAALEQTETILRSVKEHHLFTKGKTEKREVLT
Ga0208418_1013501	Ga0208418_10135011	F078867	EEKCQGGDTMFGEILAQTKMWGFWQYMFDLCNEDFSCVLGSLTAILLVFLAIVLGLGAMMTHLNKRRE
Ga0208418_1017221	Ga0208418_10172212	F048814	MGKIVFAGAMSHVLDPDYYQRACGDEGRRKTVECMT
Ga0208418_1021044	Ga0208418_10210441	F088476	GMLFLLIASVYPTGLLAAQEGLSDEERETLQQAKDPEQQLKFWLGIAESRLKDVVVHTKKLDKAESAKAVAGYRTAVTSAEDCVAKEQGGKDYKKLLTQLHKAVKKYNFALLQALDKAAEDFRQYIQSAYEASQRVQDAAEIQMARFR
Ga0208418_1022162	Ga0208418_10221621	F010820	MKSGIAALCLAATALARPGEASDPVVVVQETRTPMVSKQHRSVQHVVLLKNVSASPVHGLRVTVEFYDFFGKLLWVRTAVPVPASLGPGDTATLSLSTPTLEAAKQTRYRFAYGGASHRGRPRRRRGGRDPAGSGLLTMRPLASV
Ga0208418_1022844	Ga0208418_10228442	F069120	VRIRTAACAAIAIPLIAVTASGARLEMRLHVDASLRANAVYHLACLAGSITCSRDIFERFWKDRLHESDEDRRTVAEWQRLLATVVARAPAMKPSPLLINAVPLHPDGLARSQVMAGLIETRSAAELQRRATGLSRAEAHELLGLVGRIERRIH
Ga0208418_1023092	Ga0208418_10230921	F026515	GSFNLLCEGPYDEDIDTAAREFDAERRAKLTHALGQKLYDNYHGVQLGVKSISWALSKKVNAWQTLAFVPLETNYEYIS
Ga0208418_1023965	Ga0208418_10239651	F060669	LGVHGEPRPLLRGSRPLAEPVALSSRAARSALVLIAVTMLASCASTAPPRRLTNIEPLVGKWQGTISVGMGSPQFYYLTVKPDASIVASWGMNWQWGKVTATGGEGVRFELDHITSGTLLYYDGPSGKAIQMTPDFGGWYVYATPVK
Ga0208418_1025349	Ga0208418_10253492	F084442	TTVDYRPAFQRPFFLRGLWFRVRADIVDQQDAPKLGYQFRIILNWDRDLI
Ga0208418_1026070	Ga0208418_10260702	F009828	MDFGYSPAEQAFATEVRSFLRARPPERFASDGTDAGYGSGPHSKAFMRALGERGW
Ga0208418_1027764	Ga0208418_10277642	F005521	YGCRMIGARRIALALAPAMAAAGCMTGAQTIEQDLAYQRWKRCDTFATIVLQRIDTDGRVIVAGRETERDPFLSCMAEQGRLQQKSKPGLVVPDPIVNLLSR
Ga0208418_1031011	Ga0208418_10310111	F002508	LRQRLHPLTVGKPAPMSNDDDNPPMYARWRNSQVSRNFHRLGLLVAAIILTAGLLLMAKDALGLKLWDLLPADIPILARGIAIGLTGIGLVSVAAYGIVRAIGWTINKSV
Ga0208418_1032612	Ga0208418_10326122	F039851	MIDRRAFLAGTGAMLLAAPLAAEAQPTNKVARIGV
Ga0208418_1032777	Ga0208418_10327771	F022453	FDMWTHDGFGAYFAAMQGTIRDEQTGYLVLATATGQSGVTRTGSRFTSDDLIRHVRLHPSGQLELGFETPVDNLPDPLLLVRGAASTEGALTVQGSGGNVPHACTVRSATWQGRDARVSCQAMEIAISGGGRCERGDLKGSRPLQTGASPDGWEVSCGRSAQQTAYAICCVQ
Ga0208418_1033547	Ga0208418_10335471	F056196	MPILSITRSVFDQLHPNRASLWTQEEVEWFVERSRALIGYVARNLGSERDGNSKEWSIVIEGRDERGQFHQIDSRGHLASQSDARVLLEKRMNELLATGLKVFP
Ga0208418_1034762	Ga0208418_10347621	F012468	MRRFLPLVFAASVVFAADPLANSAQKKLDSISDRKLKPGAVVTLRAREVNAWIHEKAVKAFPEGIRNEHIDFSPGTADGNALVDLTKIGKAKNSVNPLIARLIEGERPLRVAIRVESSSGRATVFLTHVELSGVAIDGSILDFLIKHFVQPRYPDIKINEPFDLD
Ga0208418_1035061	Ga0208418_10350612	F040716	MHFRIMAAAILALSFLAVTGHPGLAAPAKCNAELRKCNSHCNLVYESSRANRTCRNRCKDNFYVCKARPN
Ga0208418_1036062	Ga0208418_10360621	F089452	NKILATLLIATALSSTGAFAEDRLRVSMENGKQRVDFSLNGNDKCVMIDDKIICAPMPKEPVHVASSESN
Ga0208418_1036212	Ga0208418_10362123	F103864	AKRDLAGARAAGASEDEVREAISFAIRANAAKTHADILKVYEPGS
Ga0208418_1036949	Ga0208418_10369492	F005282	AESSTQVGNAGTITLDWQPTHDSAGRPLIAGHVITKGGRASYCIPRLLVETLDGQGQVTARRMGFIPGTVGPYDTVYFEEPVRVPGPVYRVSIASWDKCAGGQ
Ga0208418_1039262	Ga0208418_10392621	F067711	VMAAPMDGSAPMLCALNAVMECSRRGDCERTTAEDAGLPPFVRFNVQQRLLSSVDGARTSPIAAVQRSNGRLMLQGMQNERLWGAVIDEETGRMSATVGEDDGAFAVSGACIAP
Ga0208418_1040884	Ga0208418_10408842	F053348	RDMLERVILAGYRNTWLLPPAAREALLAAEALTARHGLGASTVEQEKAVVRATFAQVRERLATWDIALPYVTHPELGRA

Scaffold ID

Protein ID

Family

Sequence

Ga0208418_1003358

Ga0208418_10033581

F026445

MNIDETKPNRQNRTITLHLGNTLAEYESTYLSETGLAALIRRVEIADSLDWGCLANGHEMGCPRQLHFTHHNSYRRWAKHFNGNQSWVVIYRVRCLDCGAVFSVQPSFIIRYKRYETDATEKLMTLLFITEDSYRMAGVSQTLAVDKQQAGSWMALETHQDQAIQPMALWRLVQWLGQLSPAQLNLALGVDPPTHIIEDEKHASQAEQKSYIPMVYAPKEALIWWVDYLHSASEAELTASLQRFQALSARLTTLTGATVDGWEAAHNALQATFKGITLAECHFHALHKLGQHLATYKRQRQKVGQPLTETEEITIRAAFWRVLKATSPEQYQQALEQLPEVFDQEPLASRKQSLLEKQALFQAWTTDQNLAVVTTALDQCMKFLNRKLENMQTFHTKSSGLATINAWAITRNCWRFLKGAKRAGLSPLELAGADFLAIPWLQWVNLLLSAWASLPSSAQALQLST

Ga0208418_1004617

Ga0208418_10046172

F007217

MPYDLRHADVRVKWLVTCLLATFGIAYAFGAWMVTLYAGFRPATVAAT

Ga0208418_1005748

Ga0208418_10057481

F015459

YAAVARAGPGGRRARWFVPLTLQFAAQALRDPLLRRRLAVVLSEAPDGGTPEGRLLAALAGVLPGPQPGGPAGS

Ga0208418_1006056

Ga0208418_10060561

F007538

HEVAPTLYYRWKDEMEKGALAALGGKSAAAQPADEQGKRIKQLERALGRSHLQIEILKNVLGE

Ga0208418_1007551

Ga0208418_10075513

F062205

VSGTLPTWRTLPPSARLLGKWVTIVQLVGYSTSLVFVWHTTRLVPAGV

Ga0208418_1008154

Ga0208418_10081541

F023728

MSLVSVGAEEERFLRSLLALLKSYLEPSWCIAARLGDLPDALLVDMDTAEGRHVWEGVDFGGTPRIALSRDRVLTAEWTLLKPVRPGGAHSLTEVLTAVAGKVQLLAPTGSVAASKLRPFAHLVRKACGHSSAADVVLATGSVLV

Ga0208418_1009491

Ga0208418_10094912

F103852

VHSFAGLPEHRMVPSPSQPESMRFIETVSVFIRQKTG

Ga0208418_1009729

Ga0208418_10097291

F064146

APIWDTKAMAIKTLAAGLGLALVFAGTGPALAQSGVEVETMAPPPPKFEIIRPEAPGSEPNRPSDADFYSTFGDPVVNYDPAFIAPFTKETETGRMGLAGWTSPVGVVTGDGPMNTRQPGWLSFGFAITWGGPPHKPAPTPVSAPR

Ga0208418_1012562

Ga0208418_10125621

F013901

MKTASHCMPEVCPEASATPQLVEIEVMPTHPLLVLQRALPWEAIIEAMTRHWREHGKNVDGGPGLPWDVSLYVPLVVLMLIKTFDSRQMEAYLAENVVARLFVGCHQHVQAQIRDHSNIARAYAALGKAGIDEVTHLVIKQAHGFGFVDEGVVSADTTAQELAIGYPNEPGILRGLAQRCGRALMRLKKRGVQGLEAALEQTETILRSVKEHHLFTKGKTEKREVLT

Ga0208418_1013501

Ga0208418_10135011

F078867

EEKCQGGDTMFGEILAQTKMWGFWQYMFDLCNEDFSCVLGSLTAILLVFLAIVLGLGAMMTHLNKRRE

Ga0208418_1017221

Ga0208418_10172212

F048814

MGKIVFAGAMSHVLDPDYYQRACGDEGRRKTVECMT

Ga0208418_1021044

Ga0208418_10210441

F088476

GMLFLLIASVYPTGLLAAQEGLSDEERETLQQAKDPEQQLKFWLGIAESRLKDVVVHTKKLDKAESAKAVAGYRTAVTSAEDCVAKEQGGKDYKKLLTQLHKAVKKYNFALLQALDKAAEDFRQYIQSAYEASQRVQDAAEIQMARFR

Ga0208418_1022162

Ga0208418_10221621

F010820

MKSGIAALCLAATALARPGEASDPVVVVQETRTPMVSKQHRSVQHVVLLKNVSASPVHGLRVTVEFYDFFGKLLWVRTAVPVPASLGPGDTATLSLSTPTLEAAKQTRYRFAYGGASHRGRPRRRRGGRDPAGSGLLTMRPLASV

Ga0208418_1022844

Ga0208418_10228442

F069120

VRIRTAACAAIAIPLIAVTASGARLEMRLHVDASLRANAVYHLACLAGSITCSRDIFERFWKDRLHESDEDRRTVAEWQRLLATVVARAPAMKPSPLLINAVPLHPDGLARSQVMAGLIETRSAAELQRRATGLSRAEAHELLGLVGRIERRIH

Ga0208418_1023092

Ga0208418_10230921

F026515

GSFNLLCEGPYDEDIDTAAREFDAERRAKLTHALGQKLYDNYHGVQLGVKSISWALSKKVNAWQTLAFVPLETNYEYIS

Ga0208418_1023965

Ga0208418_10239651

F060669

LGVHGEPRPLLRGSRPLAEPVALSSRAARSALVLIAVTMLASCASTAPPRRLTNIEPLVGKWQGTISVGMGSPQFYYLTVKPDASIVASWGMNWQWGKVTATGGEGVRFELDHITSGTLLYYDGPSGKAIQMTPDFGGWYVYATPVK

Ga0208418_1025349

Ga0208418_10253492

F084442

TTVDYRPAFQRPFFLRGLWFRVRADIVDQQDAPKLGYQFRIILNWDRDLI

Ga0208418_1026070

Ga0208418_10260702

F009828

MDFGYSPAEQAFATEVRSFLRARPPERFASDGTDAGYGSGPHSKAFMRALGERGW

Ga0208418_1027764

Ga0208418_10277642

F005521

YGCRMIGARRIALALAPAMAAAGCMTGAQTIEQDLAYQRWKRCDTFATIVLQRIDTDGRVIVAGRETERDPFLSCMAEQGRLQQKSKPGLVVPDPIVNLLSR

Ga0208418_1031011

Ga0208418_10310111

F002508

LRQRLHPLTVGKPAPMSNDDDNPPMYARWRNSQVSRNFHRLGLLVAAIILTAGLLLMAKDALGLKLWDLLPADIPILARGIAIGLTGIGLVSVAAYGIVRAIGWTINKSV

Ga0208418_1032612

Ga0208418_10326122

F039851

MIDRRAFLAGTGAMLLAAPLAAEAQPTNKVARIGV

Ga0208418_1032777

Ga0208418_10327771

F022453

FDMWTHDGFGAYFAAMQGTIRDEQTGYLVLATATGQSGVTRTGSRFTSDDLIRHVRLHPSGQLELGFETPVDNLPDPLLLVRGAASTEGALTVQGSGGNVPHACTVRSATWQGRDARVSCQAMEIAISGGGRCERGDLKGSRPLQTGASPDGWEVSCGRSAQQTAYAICCVQ

Ga0208418_1033547

Ga0208418_10335471

F056196

MPILSITRSVFDQLHPNRASLWTQEEVEWFVERSRALIGYVARNLGSERDGNSKEWSIVIEGRDERGQFHQIDSRGHLASQSDARVLLEKRMNELLATGLKVFP

Ga0208418_1034762

Ga0208418_10347621

F012468

MRRFLPLVFAASVVFAADPLANSAQKKLDSISDRKLKPGAVVTLRAREVNAWIHEKAVKAFPEGIRNEHIDFSPGTADGNALVDLTKIGKAKNSVNPLIARLIEGERPLRVAIRVESSSGRATVFLTHVELSGVAIDGSILDFLIKHFVQPRYPDIKINEPFDLD

Ga0208418_1035061

Ga0208418_10350612

F040716

MHFRIMAAAILALSFLAVTGHPGLAAPAKCNAELRKCNSHCNLVYESSRANRTCRNRCKDNFYVCKARPN

Ga0208418_1036062

Ga0208418_10360621

F089452

NKILATLLIATALSSTGAFAEDRLRVSMENGKQRVDFSLNGNDKCVMIDDKIICAPMPKEPVHVASSESN

Ga0208418_1036212

Ga0208418_10362123

F103864

AKRDLAGARAAGASEDEVREAISFAIRANAAKTHADILKVYEPGS

Ga0208418_1036949

Ga0208418_10369492

F005282

AESSTQVGNAGTITLDWQPTHDSAGRPLIAGHVITKGGRASYCIPRLLVETLDGQGQVTARRMGFIPGTVGPYDTVYFEEPVRVPGPVYRVSIASWDKCAGGQ

Ga0208418_1039262

Ga0208418_10392621

F067711

VMAAPMDGSAPMLCALNAVMECSRRGDCERTTAEDAGLPPFVRFNVQQRLLSSVDGARTSPIAAVQRSNGRLMLQGMQNERLWGAVIDEETGRMSATVGEDDGAFAVSGACIAP

Ga0208418_1040884

Ga0208418_10408842

F053348

RDMLERVILAGYRNTWLLPPAAREALLAAEALTARHGLGASTVEQEKAVVRATFAQVRERLATWDIALPYVTHPELGRA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026018: Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D1 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences