Sample 3300025786

Basic Information
IMG/M Taxon OID	3300025786 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111384 \| Gp0110938 \| Ga0210032
Sample Name	Groundwater microbial communities from aquifer - Crystal Geyser CG13_big_fil_rev_8/21/14_2.50 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300025786 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0111384 | Gp0110938 | Ga0210032

Sample Name

Groundwater microbial communities from aquifer - Crystal Geyser CG13_big_fil_rev_8/21/14_2.50 (SPAdes)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	290758495
Sequencing Scaffolds	22
Novel Protein Genes	30
Associated Families	25

Dataset Contents

Total Genome Size

290758495

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	16
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → Gallionellales bacterium RBG_16_57_15	1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense	5

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → Gallionellales bacterium RBG_16_57_15

All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense

Ecosystem Assignment (GOLD)
Name	Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Ecosystem Assignment (GOLD)

Name

Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Type

Environmental

Taxonomy

Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater biome → aquifer → groundwater
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

freshwater biome → aquifer → groundwater

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Subsurface (non-saline)

Location Information
Location	USA: Utah: Grand County
Coordinates	Lat. (^o)	38.9383	Long. (^o)	-110.1342	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Utah: Grand County

Coordinates

Lat. (^o)

38.9383

Long. (^o)

-110.1342

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001003	Metagenome / Metatranscriptome	808	Y
F002298	Metagenome / Metatranscriptome	573	Y
F002857	Metagenome / Metatranscriptome	525	Y
F003801	Metagenome / Metatranscriptome	467	Y
F007959	Metagenome / Metatranscriptome	341	Y
F011135	Metagenome / Metatranscriptome	294	Y
F016496	Metagenome / Metatranscriptome	246	N
F017598	Metagenome	239	N
F017787	Metagenome	238	Y
F021923	Metagenome / Metatranscriptome	216	N
F039475	Metagenome / Metatranscriptome	163	N
F054576	Metagenome / Metatranscriptome	139	N
F062439	Metagenome	130	Y
F063344	Metagenome	129	Y
F073076	Metagenome / Metatranscriptome	120	N
F075683	Metagenome	118	N
F076873	Metagenome / Metatranscriptome	117	Y
F083687	Metagenome	112	Y
F088269	Metagenome / Metatranscriptome	109	N
F091328	Metagenome	107	N
F093253	Metagenome / Metatranscriptome	106	N
F094905	Metagenome	105	N
F096615	Metagenome / Metatranscriptome	104	N
F096623	Metagenome / Metatranscriptome	104	N
F098658	Metagenome / Metatranscriptome	103	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0210032_1004567	Not Available	5582	Open in IMG/M
Ga0210032_1025360	Not Available	1639	Open in IMG/M
Ga0210032_1026210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → Gallionellales bacterium RBG_16_57_15	1600	Open in IMG/M
Ga0210032_1059842	Not Available	930	Open in IMG/M
Ga0210032_1059922	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense	929	Open in IMG/M
Ga0210032_1071960	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense	829	Open in IMG/M
Ga0210032_1079209	Not Available	782	Open in IMG/M
Ga0210032_1081970	Not Available	766	Open in IMG/M
Ga0210032_1099123	Not Available	683	Open in IMG/M
Ga0210032_1102351	Not Available	670	Open in IMG/M
Ga0210032_1103390	Not Available	666	Open in IMG/M
Ga0210032_1109657	Not Available	643	Open in IMG/M
Ga0210032_1110702	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense	639	Open in IMG/M
Ga0210032_1111637	Not Available	636	Open in IMG/M
Ga0210032_1112548	Not Available	633	Open in IMG/M
Ga0210032_1113173	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense	631	Open in IMG/M
Ga0210032_1117558	Not Available	617	Open in IMG/M
Ga0210032_1122704	Not Available	601	Open in IMG/M
Ga0210032_1122855	Not Available	601	Open in IMG/M
Ga0210032_1133995	Not Available	571	Open in IMG/M
Ga0210032_1153565	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense	526	Open in IMG/M
Ga0210032_1165168	Not Available	503	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0210032_1004567	Ga0210032_10045671	F096615	MAGCFGNNPEDRARERELNNYLDAADRLDNNDERIKELARDKFNALPNFYSPKGEKYRYTFMDDAMGSLKQEDFIALARLLRDGEHLQAGKLLEASLMRVLVAEAEEEIEDEEYD
Ga0210032_1025360	Ga0210032_10253602	F075683	MTHIYTANTQPATGWIDQCGEVEIRGGFGVGEMIRCECCGKKRPAEDCVVQCYYDGMSVWCAEGKGCKSPEEIEQKRLIAHENRSRGQIARRAKERLLLAAVVPLE
Ga0210032_1026210	Ga0210032_10262101	F094905	MTTLYGYIAAIVLIVFLGAGWAHEHDKRIVFEAQVEQAGKDAAKHTAETDAKHREEMQNAEQNTIIATNSIADWYRAHPAVRVRYANTDCS
Ga0210032_1026210	Ga0210032_10262105	F054576	MEFQLGLPEIIAFVLANIGGGWALLRISFAQFELRLDDRFELLDNAMADVKRIELEIVRADTRNAQTYVTQTSHDKVLERIFNVLSSMEQKLDGKADAADCDMKIMRHMERK
Ga0210032_1059842	Ga0210032_10598422	F016496	FNMEDKKKEDKYFFKKGNKYQQKGSAGLRYGGTTPVAKDKEKNLERLRCGWKPKTIVCKNITISDDEEAFANEFSAKVSEENDTYVDTVLIELAIAQILQVHRVYVYAKEKKISRDASRMIGTVLSTLREMNATKNARKEDNIKVTVNSDIMTLIQQNLNLISNDDGKKRNNILKK
Ga0210032_1059922	Ga0210032_10599224	F062439	MKNKQKMEDDIKKRIPPWSENVEKYRISAVYTLISYTTPHYLIFRYYCN
Ga0210032_1071960	Ga0210032_10719601	F076873	MEKYKKFITEYKKDFLLPHNLSPKEKDIFIYLFELLRKKINRGIYPELYNDEIIYSKSDVKNLILKEIVIFKQYKKGWIITIHPTYITKNVECPWCGARFNEKIYFRQKRMRCPSCMWGMNGSTVAEKFEEINDVSNSNITENSTKTEKVTTDIKLAPTKIERTMQIARQKIIPFQTSKADSLNAISAINRIAEKKKEKRVITIQEKI
Ga0210032_1073905	Ga0210032_10739052	F096623	TSKTYLAIQTFPLSSFQGNKIGDGWVAIMEFNNSNIHNPNVLSWSYDIEPTGTFRLSKNTSTLKLHHNRTYSLGAKTTFIGEDLHAGFFSYAFASSKIKKTTFKNLSCGNY
Ga0210032_1075496	Ga0210032_10754962	F094905	MTTLYGYIAAAVLIVFLGAGWAHEHDKRIVFQAQVEQAGKDAAKHTAEIDAKHREEMQNAEQNTIIATNSIADWYRAHPAVRVRYANTDCS
Ga0210032_1079209	Ga0210032_10792092	F002298	MKNTKASVGAVPTLENKIKRGILGMTIKKIDNMKEKSDDIDRMNLEFYGMVGKTHGPQTIFEQHRTTIKIDTFRRDIGKRWAENMRKREEIYEIIDMLYELVKIETENPDAERPKQMSWAEVRKKIQQKMIKTLSR
Ga0210032_1081970	Ga0210032_10819701	F088269	KIRFDCNKIGDGNMDTSIDSTDISIYHKNEGVYELFAIEKLDILSNEITFQTDIGENYEMLVEYFEDNFHFLIDSLSDASSLLATAMCVRSLPLTPQKDINAKEYERRAKEIIARSSTSF
Ga0210032_1081970	Ga0210032_10819702	F016496	MEDKIKGRRHLFEKGNKYQLMGSAGLRYGGTTSIAKNKEKNLERLRCGWKPKTLICKDITISDDEEAFAVEFSKKVSEENDTYVDTVLVELAIAQILQVHRVYVYAKDKKISRDASRMIGTVLSTLREMNATK
Ga0210032_1082216	Ga0210032_10822161	F073076	IDQQKGFFYDVWKNPDKYGYTKLKMTWQECDGYTKEDMRKKKIEIGTRAFASQYECEAQSTTSSFFTPSIIEGSIRNCDYKHGITIGGIDLAKKKDYASISVVEKRDNNFNLIINFQTQLNYTDLARISKQYEKEYLTTSFLVDTTTGEEFVDFASKEPYLVSLKPFAFTSNSKKQILDYLRIVMEQKRLVIPERFQELISDMRRYQYSDHLPDSISSLALSLWNEKALSERKFIKEIYAVTND
Ga0210032_1099123	Ga0210032_10991231	F091328	VGKKSVIMLAFLLVGGVAGGVFLYLKHQRTVLSNIAVEKSGDLPLELSVDFDPTVNSPKFMIESVDRQTKTFNLKSVFPPTFEGKKLTSRITCQEIKIVGPGDSVGEEVVYDVLMERMEGVSKEMMIFSGLCSN
Ga0210032_1102351	Ga0210032_11023512	F054576	MEFQLGLTELIAFVLANIGGGWALLRLSFAQFELRIKDQFKLLDKAVNDVKRIELEIVRADTRNAQTYVTQANHDKVLERIFNVLSSMEQKLDGKANAADCEAKLLRHMERK
Ga0210032_1103390	Ga0210032_11033901	F002857	KKRIWGTADVDEETYDEMIRTEREKQIGNVFKDDGKKEMEASMKFLSSKNFIERISLRDGVRRKFKLVKDEATEIIGFDGNTKQGITYTVLENEKIKSFFTTSLKCINEMSKFRKDDVFEIQLQTKKMGNTVVCFHAIKKI
Ga0210032_1106374	Ga0210032_11063741	F083687	FMHIFQLLRKKINEGIYPEINNDEIIYTKSDLKNLISKGIILFGRYKKGWIITINPTYATKNVECSWCGAKFNEKIYFRQKRIRCPSCMSGMNGSTVTEKFEEINDVSIISTTENKTKTEKVTTDIKLVPTNIERTMEIAKQKIIPFQTSKADKMNAISTLNQIASEKNKSLALIAQKEILANFSDDCIILLREYFFVGNKFFSATKYMNMRLSEVVK
Ga0210032_1109657	Ga0210032_11096571	F098658	SNIDPMGVYKVESCVCVVFGLVQFVSNSFIGFELNLVVGYWLGVLVRWRIDVKVIVSNRIIGKVCSCLLSCGGRHYSALHPPGWLTVGGFAVGGNGVGPDSEPVSAMRLSLSPFGTSDGAIVVACSVLFVLVVLGALARLCLESLRGGLVMVVEVPVAKPCCFIKCWMAALIFAIWASKLFWVSCIAVWACCMWLS
Ga0210032_1110702	Ga0210032_11107021	F011135	KFKKFKQENKDFLLPCNLSTKEKDIFIYLFRFLRKKIDQGIYPEIYNDEIIYTKPDVKSLLLKEIVLCKKYKKGWVITVNPHNITKNTECGFCGAKFNEIVYFRQNSITCPGCGFRMHSPTTAKRVDDYSKAITNTEKLTTDIVKVPNEHVITDTPGNIKVTDIVLAPTAMERTIQIANQEVIPFQTSKADRLNAISAINRIAEKKKEKRAVI
Ga0210032_1111637	Ga0210032_11116371	F093253	CKSPVAFTEICQYQGRQVQKFKQTKRILRLISENNKSIAVLPRGASKSFSLAIIALWYFYTHENFRVAIFSRSHRQSKAVLEICSDIIDSSPLLKTSRQSFQIDQKQRLKSHINSEIIAHPFDASTVLGEHPDIVLADECAFFGDDSFFRMVVLPMQSGVRTIEKIPKISLVSTIDQDEGFFYDVWKNPEKYGYTKLKMTWQECDGYTKEDM
Ga0210032_1112548	Ga0210032_11125481	F021923	MNLIEFFNNYEYIKKFRNHLTVNRDNLLNDFLNNNIEKSLNQLLLSPSNAYLSKEIIPQTFADMTWKFKLLEGQQTLTSPSPREFTLTYESQTSRSIFYYETPISGSCYVECDFVDVEPGTTNCIFLGNAENITSKTYLAIQTFPLSSFQGNKIGDGWVAIMEFNNSNIHNPNVLAWSYDVETTGIFRLSKNTTSLK
Ga0210032_1113173	Ga0210032_11131731	F001003	MILLIQMKKITMEKFKKFKIENKDFVLPQNLSPKEKDIFIYIFRLLRQKINKGIYPELYNNEIIYFKSDMKNLISKGIILFVRYKKGWVITLNPIHITKNVECPWCGAKFNEKIYFRLKRMRCPSCMYGMNGSTVTEKFETDDIIFPTKVENKTQIKKITNDIEIVRTGIQKIIQQSKEKIIPFRSS
Ga0210032_1115892	Ga0210032_11158921	F017787	EKIIREGTHSETREKYIIGVRAKFDIHFEYFEISKRKDPDFNDECVYTSRKFFFLKNIITNNEKKEIEKFEKNILDRFYYGK
Ga0210032_1117558	Ga0210032_11175582	F016496	MEDKKKEDKYFFKKGNKYQQKGSAGLRYGGTTPVAKDKEKNLERLRCGWKPKTLICKNITISDDEEAFANEFSAKVSEENDTYVDTFLVELAIAQILQVHRVYVYAKEKKISRDASRMIGTVLSTLREMNATKNARKVDNIQVTVNSDIMTLI
Ga0210032_1122704	Ga0210032_11227043	F063344	NNMKKPTYSEYQNIQKHKISNEYSVMFFTIGRCAFFRYYEDDGIEISPIDRSCVLPMLSDEEIEKLSKFLNKIKKEYNKYIF
Ga0210032_1122855	Ga0210032_11228552	F039475	MEKLNVLIYTKDEDYNPLGSIQLEFFQLDDAGNETYIGKSISGDDGRLEVSKTALGGEGARIRVRNAKRLSGEDIVQTSDGKYSTFIVSNDETIQKVEIVFQIKKKHNISINVTWK
Ga0210032_1133995	Ga0210032_11339952	F096615	MAGCFGNNPEDRARERELNNYLDAAARLDNDDERIKELARDKFNALPNFYSPKDEKYRYTNMDDAMGSLKQEELIALARLLRDGEHLQAGKLLEASLMRVLVAEAEEEIEDEEND
Ga0210032_1142278	Ga0210032_11422781	F017598	LAQLRMDSDFTEMLKGTNTYMKVTKLLEPHSKIVGYFLGKDIIHTNRDDITNRLAAHITQYSQTTWKPALDVLNTTVLGKGHNTRMVTLVVGNTDYQGVLDILTQQPMETLSFLDHRTKRQDINQFDKMLKYHDYIVSHSTAVRLENVHYLDTQALWAHLQPITNTSFCDIFAGRTQGTTYIQ
Ga0210032_1153565	Ga0210032_11535651	F007959	YLIIMMETVINFEKFKQEYKKDFDIPVLSAKEKDIYIYLFLSLRRKMSKGMFPELYNSEIMFSKSDLKALVLKNIVIFQNHKKGWIISINPKYITKTTECSFCGAKFNEIVYFRRNSITCPGCGFRMNGLATAKRVNDYSVAITNIEKVEAIPKVTTSVVKVPIEHVITDVPGN
Ga0210032_1165168	Ga0210032_11651681	F003801	MENTKESVYIFSVPIDKIKKHILNRSIAKINCIIHKTNKIRNMNYEFNRQMDIASPPKTDAEQEKKAKKIDNFQREIEKRWGEVWADKEEIRTTMTILYELSEIRRKYICVAEEEQMSWADIRQEIQHQMKNSFCM

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300025786: Groundwater microbial communities from aquifer - Crystal Geyser CG13_big_fil_rev_8/21/14_2.50 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences