Basic Information | |
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IMG/M Taxon OID | 3300025756 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133460 | Gp0293432 | Ga0255239 |
Sample Name | Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Miss_RepB_8d (Metagenome Metatranscriptome) |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 125033846 |
Sequencing Scaffolds | 62 |
Novel Protein Genes | 74 |
Associated Families | 67 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 8 |
All Organisms → Viruses → Predicted Viral | 1 |
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7 | 1 |
Not Available | 43 |
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii | 3 |
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1 |
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 1 |
All Organisms → cellular organisms → Bacteria | 1 |
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → crAss-like viruses → Suoliviridae → Boorivirinae → Cohcovirus → Cohcovirus hiberniae | 1 |
All Organisms → cellular organisms → Eukaryota → Cryptophyceae | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States |
Type | Environmental |
Taxonomy | Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | freshwater river biome → river → river water |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
Location Information | ||||||||
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Location | USA: Oregon | |||||||
Coordinates | Lat. (o) | 46.1812 | Long. (o) | -123.1834 | Alt. (m) | N/A | Depth (m) | 5 |
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