Sample 3300025733

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300025733

3300025733: Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Law_RepB_8d (Metagenome Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300025733 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133460 \| Gp0293455 \| Ga0255262
Sample Name	Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Law_RepB_8d (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	13478567
Sequencing Scaffolds	14
Novel Protein Genes	16
Associated Families	15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102	1
Not Available	9
All Organisms → cellular organisms → Eukaryota → Cryptophyceae	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → unclassified Perkinsus → Perkinsus sp. BL_2016	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater river biome → river → river water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: New York
Coordinates	Lat. (^o)	45.0061	Long. (^o)	-74.7949	Alt. (m)	N/A	Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000191	Metagenome / Metatranscriptome	1666	Y
F023359	Metagenome / Metatranscriptome	210	N
F023532	Metagenome / Metatranscriptome	209	N
F029333	Metagenome / Metatranscriptome	188	Y
F032540	Metagenome / Metatranscriptome	179	N
F037068	Metagenome / Metatranscriptome	168	N
F039170	Metagenome / Metatranscriptome	164	Y
F044534	Metagenome / Metatranscriptome	154	Y
F053640	Metagenome / Metatranscriptome	141	Y
F054052	Metagenome / Metatranscriptome	140	N

Showing 1 to 10 of 15 entries

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0255262_104318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei	688	Open in IMG/M
Ga0255262_104851	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102	653	Open in IMG/M
Ga0255262_105176	Not Available	632	Open in IMG/M
Ga0255262_105217	Not Available	629	Open in IMG/M
Ga0255262_105714	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	604	Open in IMG/M
Ga0255262_105998	Not Available	591	Open in IMG/M
Ga0255262_106222	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	580	Open in IMG/M
Ga0255262_107106	Not Available	547	Open in IMG/M
Ga0255262_107165	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → unclassified Perkinsus → Perkinsus sp. BL_2016	545	Open in IMG/M
Ga0255262_107627	Not Available	530	Open in IMG/M

Showing 1 to 10 of 14 entries

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Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0255262_104318	Ga0255262_1043181	F053640	QSKRSGLKDVAESTAGIIPGDRGMVGDSWCRPPLQMAQAVERHISPVPLAGVVSGQFTHESGTERQGAIRNRVEPSQAHGKFRPVRRRSYPRGFRLLLRRPERSHGFRRANPAKRPRSQHEGGAQGNRDSGERADLAKSVKPPQRSGVTNHVAPLQKRKQP
Ga0255262_104851	Ga0255262_1048512	F054052	LLAALLGVASAIYPDDHWSYSTKLSASNIDDEIKSAVDGGKTMFVRLIASAG
Ga0255262_105176	Ga0255262_1051761	F086577	SKVLNPGVAGLPDFGSFGLTDLVTEMAAPANGSSFARLKTLGATVIATQSWTVIGDVRVVSFAFSVLMETDAAGNRKFSGSVQGSISIGRFTFGAYVPFNKPGSQMEFVLPEVTVNGVNVNELFGVGTTVSVGADDVENLLAGAGAEVTARVKAELAQKAAELKALAKEQLRANLLAPLQELQARAELMRQQAQNGSVLLLGNVVDALRI
Ga0255262_105217	Ga0255262_1052171	F044534	GNGWWQLVPPSPPNRVSGMAGIYHQFLWPESCPVSSHTNQELSREERLETAPNGVRPTGSFDPCADAVTPEGFGCYCADQNAVAISGGTTPPKGPARSTSRARKEVVTAGSERT
Ga0255262_105714	Ga0255262_1057142	F092088	RMVLYLIYEKHNPDSFWKPYIQVLPTDYNNIMSLTDAELRKLLRRPGCENTHNLGVQMRRTFNRFFNQYKSLVEPNYPEMKFSREDLLWGFNTLVACGWGSGTDGTGDKMMVPFSELPVHRRESAQKATNRGFISAAKEYQAGEELTFDYGLLNDAVLAFYGIPTPDCRGLRR
Ga0255262_105998	Ga0255262_1059981	F029333	MTIWVVVGVATLPVGGPVPLICTPGVPVLEKKPVGYVNVMLLPISSLPPAVVVNENVAAAGVLPATRSDVAIANEGSVARPPITPELTPEDAV
Ga0255262_105998	Ga0255262_1059982	F082153	MVRPVTVTVTAVLAAIDWAAMVMTIWVLVGVATVPVGGPPPLICTPGVPVLEKKLDGYVSVMVPPVASAPPAVVVNENVAAAPVL
Ga0255262_106055	Ga0255262_1060552	F000191	FLAASGYTVGNLVNQHVRFIESGEKDPLMTYEKALITQSRALEIPELD
Ga0255262_106222	Ga0255262_1062221	F032540	RGSVAVVPELGLATGADQLGGRSLRKRVVVAVVMLALGCVAVALAVASASGDAELRDTSVLKVGVSDRLDVWRQYENDEDINPRKKTGPKADWEKQRSIPDFVDGIIGPSPTAMDEGGGKSRGSFNVQKITDKTDFYYLRVSDRSGNGDRIRAELVGSDGYRLDWVGFGEIFTGPIHEGNLGETDYLRVEDLI
Ga0255262_107106	Ga0255262_1071061	F039170	DIEVQTATVPWFHNSWSESEHGHGGAKGNTGLAISAWGNVIVFYARNQLNSYFMNGQERTWHNHGWTTLSTGIQCAKSGAHYNFLIDHGTGYLRIWGYMVGGNNMDVYGHASGSWATGKSLSGAWGDWDGNAGNDQHHVNQLNAAGRLSVLGTPRSYFKNKAPRTSTNGQFMLAFDMELDES
Ga0255262_107165	Ga0255262_1071651	F023359	VRNWFIFSIGMSFTRIAITLLAALVVLSSVIAFLSFLGLPQAFKDEIPNCVDGPCREFSNSIKLSDLLEVQGANTYSLVNTRTWGPVEGWFIVLGIIPVSVVLLALIVLNKFPLPIDSEASSGEAL
Ga0255262_107627	Ga0255262_1076271	F071977	LGTDMFSKASNAVHDFVGGGIKNAVNQVVDFGSVAMVGALKHVNDRITDFFDPNKSKREYMNSQEYKDKMAAKAIFQTFSTKLGLPSNMPKYLTDSLVQWIIGEMKVTPLRRQPFLTNLNSDDQCVSEKAPDTCTEDDIKCIVLANKCFLDDEGCVRAALEKVPTSALEKYAAANR
Ga0255262_107795	Ga0255262_1077952	F082152	LIDTPGVPVPAKKPHGYVSVMVLPVASAPPALVVNDTVAAAGVLPATRSDAAISNEVFVT
Ga0255262_107807	Ga0255262_1078071	F023532	VDDVPVNPTVMVEEAETRLLANETEADDKAPANMAGTDTLATVSTGAKPGFAPYVDIVEVVAAAAALGIVRAEMTHTMTPFKAVAVPRASFTLGEEYVAVIVPDEMAVPPLLHVAVGLLPPKEVKPDIVITSATVDDVPVNPTVMVEEAETRLLANETEADDKAPANMAGTDTL
Ga0255262_108005	Ga0255262_1080051	F029333	PLICTLGDPALAKKPDGYVSVMLLPAASAPPAVVVKVNVAAAEVLLATRSAKATTNVTEVTAPPITPDA
Ga0255262_108031	Ga0255262_1080311	F037068	TVSGLLLKVADFEGVKPAVQADMERLQKQMSEEVQGLASRVETLQAAVEQSGKESEGLLLASLMKLQEEVDGKIGAVKGEVDVQGKSMLEVLETLSAERKAADDDRKQVQTRLQGVSSDVEAVQAQSAKQAETVSGLLLKVADFEGVKPAVQADMERLQKQMSEEVQGLASR

Showing 1 to 16 of 16 entries

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