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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300025586 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0114820 | Gp0116306 | Ga0207996 |
| Sample Name | Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKG (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 338938472 |
| Sequencing Scaffolds | 30 |
| Novel Protein Genes | 32 |
| Associated Families | 22 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Atribacterota | 1 |
| All Organisms → cellular organisms → Bacteria | 5 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 1 |
| All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Atribacteria bacterium SCGC AB-164-P05 | 1 |
| Not Available | 14 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulforapulum → Desulforapulum autotrophicum | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp. G11 | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → unclassified Alteromonadaceae → Alteromonadaceae bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Saline Lake Microbial Communities From Various Lakes In Antarctica |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → saline lake → lake water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Hypersaline (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Antarctica: Ace Lake | |||||||
| Coordinates | Lat. (o) | -68.4725 | Long. (o) | 78.188 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010230 | Metagenome | 306 | Y |
| F026446 | Metagenome / Metatranscriptome | 198 | Y |
| F027599 | Metagenome / Metatranscriptome | 194 | Y |
| F031722 | Metagenome | 181 | N |
| F039448 | Metagenome / Metatranscriptome | 163 | Y |
| F042665 | Metagenome | 157 | N |
| F048391 | Metagenome / Metatranscriptome | 148 | Y |
| F060609 | Metagenome / Metatranscriptome | 132 | Y |
| F063346 | Metagenome | 129 | N |
| F067269 | Metagenome | 125 | N |
| F067270 | Metagenome | 125 | Y |
| F069498 | Metagenome | 124 | Y |
| F069520 | Metagenome | 123 | Y |
| F075591 | Metagenome / Metatranscriptome | 118 | Y |
| F075727 | Metagenome | 118 | Y |
| F077964 | Metagenome | 117 | Y |
| F081868 | Metagenome | 114 | Y |
| F089824 | Metagenome | 108 | N |
| F091299 | Metagenome | 107 | Y |
| F092080 | Metagenome | 107 | Y |
| F096357 | Metagenome | 104 | N |
| F102143 | Metagenome | 102 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0207996_1002179 | All Organisms → cellular organisms → Bacteria → Atribacterota | 12325 | Open in IMG/M |
| Ga0207996_1003439 | All Organisms → cellular organisms → Bacteria | 8558 | Open in IMG/M |
| Ga0207996_1004714 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 6791 | Open in IMG/M |
| Ga0207996_1006089 | All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Atribacteria bacterium SCGC AB-164-P05 | 5591 | Open in IMG/M |
| Ga0207996_1008135 | Not Available | 4439 | Open in IMG/M |
| Ga0207996_1012796 | All Organisms → cellular organisms → Bacteria | 3137 | Open in IMG/M |
| Ga0207996_1013154 | Not Available | 3070 | Open in IMG/M |
| Ga0207996_1017834 | Not Available | 2418 | Open in IMG/M |
| Ga0207996_1018807 | Not Available | 2323 | Open in IMG/M |
| Ga0207996_1029052 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulforapulum → Desulforapulum autotrophicum | 1685 | Open in IMG/M |
| Ga0207996_1031896 | All Organisms → cellular organisms → Bacteria | 1575 | Open in IMG/M |
| Ga0207996_1039604 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1341 | Open in IMG/M |
| Ga0207996_1040745 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium | 1315 | Open in IMG/M |
| Ga0207996_1050828 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp. G11 | 1121 | Open in IMG/M |
| Ga0207996_1052945 | Not Available | 1087 | Open in IMG/M |
| Ga0207996_1057315 | Not Available | 1026 | Open in IMG/M |
| Ga0207996_1060682 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter | 985 | Open in IMG/M |
| Ga0207996_1062868 | All Organisms → cellular organisms → Bacteria | 960 | Open in IMG/M |
| Ga0207996_1064774 | All Organisms → cellular organisms → Bacteria | 940 | Open in IMG/M |
| Ga0207996_1070931 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → unclassified Alteromonadaceae → Alteromonadaceae bacterium | 881 | Open in IMG/M |
| Ga0207996_1082968 | Not Available | 787 | Open in IMG/M |
| Ga0207996_1087888 | Not Available | 754 | Open in IMG/M |
| Ga0207996_1094565 | Not Available | 716 | Open in IMG/M |
| Ga0207996_1094738 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales | 715 | Open in IMG/M |
| Ga0207996_1101817 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 679 | Open in IMG/M |
| Ga0207996_1105668 | Not Available | 661 | Open in IMG/M |
| Ga0207996_1119869 | Not Available | 604 | Open in IMG/M |
| Ga0207996_1121314 | Not Available | 599 | Open in IMG/M |
| Ga0207996_1123687 | Not Available | 590 | Open in IMG/M |
| Ga0207996_1138099 | Not Available | 544 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0207996_1002179 | Ga0207996_10021792 | F081868 | MTDKQKTKKLPLAKGNSYGVSTAIWNNTNKAGTKYQSISLSASTKQTDRSYKNRTIFFPSDLENLIAALTELKANADAEGIQTGFVEKK |
| Ga0207996_1003439 | Ga0207996_10034398 | F075591 | MQDLAKLSELAEAEIETLRADGIDLTPAEIVEINALGHAVESPETRRLLARGAPVAIGGVYLWPMSLYAQDWFDRVGCQLDGNKQQTFALAYAMAHGRDAGEPLAMEGRDAEKTVKRWGKSLKCTFGELNVAVSQVLAQDEDAEQPPSETGGMTMGDFSAFLASACGGDPDFWERRCASGYTHAVLDCLCRQNSADGKKTMADPRIRAERALGWAVEKIKRDRAKIAGQT |
| Ga0207996_1004714 | Ga0207996_10047141 | F067269 | MIKSHTGSYTCALERQLPDSDASFFWDTSDSKKKRKGYRDGLKYDAVSGTKRKRYRGYDIVYTRRKNSSFCAHTIDVLGEGVGFEKNTPESEDTEEVYAMFDEWIDNNN |
| Ga0207996_1006089 | Ga0207996_10060895 | F026446 | MKVTGETFSFTKEEKEPKRKDVINIKLAGKRTVTRQNSGELYTKKHRRGNS |
| Ga0207996_1008135 | Ga0207996_10081354 | F069520 | MAEIDPQVFGGLIADVKTLMKQTEQSRDDQTVANNILFAKIDNLSANGCVQGEGLRIRIKTLEEKPAKLVAIGSMIIAGIVAIGGACVWLYEKFKALQP |
| Ga0207996_1012796 | Ga0207996_10127963 | F060609 | MNELEKSESVSVSRREFCKKAIKRSSVAAAVGVAGYLAYRKPAIRSFFGASDAYAANTGAGSFSLKGDSN |
| Ga0207996_1013154 | Ga0207996_10131543 | F060609 | MNELQKSESVSVSRREFCKKAIKRSSVAAAVGVAGYLAYKKPAIRSFFGASDAYAASTTTAGKFTLKGDSN |
| Ga0207996_1013266 | Ga0207996_10132665 | F102143 | VKLVSKSIKIDPELWHEARVKAMAERMTLQELIAKLLTEYLKNKGR |
| Ga0207996_1017834 | Ga0207996_10178346 | F075727 | MNKINKKGWVARDFIIAMLMFSGVLAIWVLMIGSVANDYGNTDVIDPEFSEKFDKFSEETDRAGEMWEAATSEGGLSLVGAADLLFFSTFKVISLVFNSVVAAGQQMAGFGEFFGIPSEISTIFSVLFFTILTVSIVFIIISSVRSGREL |
| Ga0207996_1018807 | Ga0207996_10188073 | F091299 | MKEEKEKDKLENITGSGIEVTIKGKEYKLGIFGMRDLADFRQYVKGQRIKIIQATIVSMEEKLILINSILDSNVNETKELQTMDGVTFMLWRSLKKYQPELTLADVDDMIDLDNISEISNVLMNIGGKVKNSQKRAKKV |
| Ga0207996_1029052 | Ga0207996_10290523 | F092080 | MQDKRITIRIPFEIWKDLRELQTVGKISSIQQAAVTGMNKLIESLKWGEEEMRDTLRGVSKKRVLDCLVREKPLGNWEDVHGERTDADADRS |
| Ga0207996_1031896 | Ga0207996_10318962 | F063346 | MNVEHRIMYSTIYNIDKATRPPRLSEQIKGRRALSTARDDGQERLPHSTFDVERSMFTRLRRRQRRPGFDVQIVASEITTKSSYHVEITYTGQEF |
| Ga0207996_1039604 | Ga0207996_10396042 | F027599 | VVKLVPVPNKEPPVDAAYQLMVPAEAVAPRFTVPDPQLEPGAVPVMVGTGFMVAVTAVLVAVIQPPFVAST |
| Ga0207996_1039604 | Ga0207996_10396043 | F027599 | MVGVVKLVPVPNEEPPVEDAYQLMVPTEAVAPRSTVPVPILEPGVVLVIVGIEFIAAVMAVLLDVVHPLFVAST |
| Ga0207996_1040745 | Ga0207996_10407452 | F063346 | MNVEHRTSNVEHRIMYFTIYNKDKATRPPRLSEPTKGRRTLSTARDGGQERLPHSTFLPRETFFLFHWGDVERSMFDVQIVASEITTKPSYHVEIMYTG |
| Ga0207996_1050828 | Ga0207996_10508282 | F096357 | MNNLLDHPIIKRLHRESSVTLTDLLDRKLFIEPPAEPCGHIHPSGWFLCYQEDLAQAESERLRAARKRNPSLICAAALVVASVTGKLSEEQKNMAFYFTRYVEAHEYELDQLVRRSTGSHNSAEIRKEEAAERMETAFSLWLKLDKPERDKCAIIAKRMGCKVDTVREWRRKGWRSG |
| Ga0207996_1052945 | Ga0207996_10529452 | F039448 | MKVNQAIELAMAKTLRKYAQMGEDVTVRAWRSLEADGSWKENPDRKFPMIDVRCSVPKPDDNESTLQVECAILMGTNTDDDKSHAFIVGMEDAVQDVCDTLFSQYKTEVFTGEELAYFLARVVAETSTDAFQFGGLTFGDGLAPADDNGINMIGITMIVHYGRS |
| Ga0207996_1057315 | Ga0207996_10573152 | F069498 | THGVIEVDAFDEMFGKPDEEPEPDNPEMSLEQLMGGGEDD |
| Ga0207996_1060682 | Ga0207996_10606822 | F096357 | MNNLLDHPIIKRLHRESSVTLTDLLDRKLFIEPPAEPCGHIHPSAWFLCYQEDLAQAESERLRAARKRNPRLILAAALVVAGATGKLSEEQKNMAFYFTRYVEAHEYELVQLVRSRTGGVNTAEKRKEEAAERMETAHSRWLKLDTPERDKCAIIGKRMGYKANTVREWRRKGWRSG |
| Ga0207996_1062868 | Ga0207996_10628682 | F069498 | EKHGVIEVDAFDEMFGKPDEEPEPDNPEMNLEQLLGGGEDDYD |
| Ga0207996_1064774 | Ga0207996_10647741 | F092080 | MQDKRVTIRIPFEIWKALRELQTVGKISSIQQAAVTGMDKLIESLKKGVKENRKEAAKNRVLNVLVKERPLGNWEDTHRERMEADADRS |
| Ga0207996_1070931 | Ga0207996_10709312 | F096357 | HPIIKRLHRESSVTLTDLLDRKLFIEPPAEPCGYRHPSVWFLCYQEDLAQAEHERLRAARRQNPSLIHAAALVVAGATGKLSEEQKTMAFYFTRYVEAREYELDQLVRRSTGSHNSAEIRKEEAAERMETAHRLWLKLDTPERDRCAIIAKRMGYPVDTVRKWRRKGWRSG |
| Ga0207996_1082968 | Ga0207996_10829682 | F031722 | MKKDETATTQTPTPTQKVTKPSFYPEQAAAEKLGLSKETLRHWRVGYTVKSKGTRYTYPPKMKDGEGTTWKKEYPAKFSPILWDADFIDTLASALHTQRIVMGDLKP |
| Ga0207996_1087888 | Ga0207996_10878882 | F077964 | TMKKLITITAILFLLSPAVAFCQTAESKTSPPTIQKIAPNVYYYNYNITEVQKEPEGGGEAETFYQYNYVRIQGKPTKRKVLDAIEAAESSTVTAEVEAVATERSTAKTQLADIAALSYAQVDNYVDNTFGNLPAAQKNALKKLYKTVLAMLKQMDLSE |
| Ga0207996_1094565 | Ga0207996_10945651 | F060609 | SRREFCKKAIKRSSVAAAVGVAGYLAYRKPAIRSFFGAGDAYAANTGAGSFSLKGDSN |
| Ga0207996_1094738 | Ga0207996_10947381 | F048391 | MNDSKSVEPINTLDYLEELLGKGYVIKGPRKDPSRDLISFKAFLKKGKEFAPEGWLSHMGYEFIEPSTFTKGHKIAYKIIDEFPDERFNSNYTLVKGNREIPLYLKVAVLKAE |
| Ga0207996_1101817 | Ga0207996_11018172 | F060609 | MNELPKSDAVSVGRREFCRKAIRGSSVAAAVGVAGYLAYRKPAIRSFFGAGDAYAANTGAGSFSLKGDSN |
| Ga0207996_1105668 | Ga0207996_11056681 | F060609 | MNELKKSESVSVSRREFCKKAIKRSSVAAAVGVAGYLAYRKPAVRSFFGAGDAYAANTGAGSFSLKGDSN |
| Ga0207996_1119869 | Ga0207996_11198692 | F089824 | MFTNLSPEEATIAYIIRAYKSFDNTITQYDIADEYIIRQGIEITPRRVRRIIEKLIEKGLPILSSPHYPHAGYCWFTYDSERVECINRLRRKAAKIFIRARRINRNCMAVRDKREKIEQEEMF |
| Ga0207996_1121314 | Ga0207996_11213141 | F042665 | RPKTMTSPKMSFATLIMLSSVVTVVVTLGVMPLLALTGSVAGLFFAPVAGMAAGYSTARWLGGYIDDK |
| Ga0207996_1123687 | Ga0207996_11236871 | F010230 | AKAVHSPHAFTNVVALLVTINGNELRLVQPRQVELKPVPLLILINGNELRLVQSRQVESKLVPLLVFINGNELRLVQFRQVWAKLVPLLVFINGNELRLLQPRQVKLKIVPSLVLINGNELRLLQPSQVKLKSVPLLVSINGNELRLLQLIQAKRKLVPLLVIINGNEVRLLQFCQVEPKSVPLLVLINGNEVRLL |
| Ga0207996_1138099 | Ga0207996_11380992 | F067270 | DEVKHFDKELISILELPNVKSLRDRIKKDKRDTEEMLNLYYRMGKVNKLIKLVKSEMRKCNDRAMALLGHRLQRVTRKYDRHRDTSYDL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |