3300025522: Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR12Aug_1A (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025522
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053062 | Gp0055518 | Ga0208371
• Sample Name: Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR12Aug_1A (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 141076510
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → Levilinea → Levilinea saccharolytica	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → unclassified Syntrophobacteraceae → Syntrophobacteraceae bacterium	3
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon HGW-Methanomicrobiales-4	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Serpentinite Rock And Fluid Microbial Communities From Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) And Ligurian Springs (Italy)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Serpentinite Rock And Fluid → Serpentinite Rock And Fluid Microbial Communities From Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) And Ligurian Springs (Italy)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → planetary subsurface zone → rock
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: USA: California, McLaughlin Reserve
• Coordinates
  • Lat. (^o): 38.8739528
  • Long. (^o): -122.4391613
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025315	Metagenome	202	Y
F076639	Metagenome	118	Y
F098715	Metagenome / Metatranscriptome	103	N
F102634	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208371_1000965	All Organisms → cellular organisms → Bacteria	5686
Ga0208371_1009960	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → Levilinea → Levilinea saccharolytica	1826
Ga0208371_1021881	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → unclassified Syntrophobacteraceae → Syntrophobacteraceae bacterium	1157
Ga0208371_1022952	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon HGW-Methanomicrobiales-4	1124
Ga0208371_1044116	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → unclassified Syntrophobacteraceae → Syntrophobacteraceae bacterium	731
Ga0208371_1055184	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → unclassified Syntrophobacteraceae → Syntrophobacteraceae bacterium	628
Ga0208371_1064185	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans	564

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208371_1000965	Ga0208371_10009655	F076639	MENTELKSDREKAPIYWMHEAITYLGLDRLGLARPDKAIYRLVEKGALHPKKIAGHFAFDKKELDLLAANGDQKRGRGRPRTFNSGN
Ga0208371_1009960	Ga0208371_10099602	F025315	MQNYLLYTCEILLVVVTPLLILYIKGNWPLRKVIPPLMIIPVLWYFTYAPLHELSHAAGTYLVGGKVIEYRLIPRFWLGEFGGAWATPSGYTQSWQQLTSSAFPYMLDIVCLVVAIFVFRRRFSRNPFLVGLAFMLLCLRPAIDFVFESIGFLSGWRGDLWYMQQIVGPFAIWSFILISIGLAVYSISSTLSHFVSFSKH
Ga0208371_1021881	Ga0208371_10218812	F102634	MDTTIKKRVEIEGYGKLDGEFIQNEQGWFCREVNGVRWNFREWGDQAAMETPEEAALYLLSLDVVDEPEP
Ga0208371_1022952	Ga0208371_10229522	F102634	MEMTIKKKVEVEGFGTLDGEFVQNEDGWFCREVGGTRWNFREWGDPAAMKTPEEAADYLL
Ga0208371_1044116	Ga0208371_10441162	F102634	METTIRKTIEIEGYGKLDGEFIQNEQGWFCREVKGIRWNFRDWGAPSAMESPEEAAFYLLSLDVDDLPDVD
Ga0208371_1055184	Ga0208371_10551841	F102634	METIIKKRVEIEGYGMVDGAFIQNEEGWFCREVNGIRWNFRDWGAPAPVESPEEAALYLLSLNVVDDAES
Ga0208371_1064185	Ga0208371_10641851	F098715	MADSIKVQVMQNLAEVLGAIPDLGSVHRWQGSPTDLDRVKLPALFFWDEEEARDKRNRLAMGTLKLYVAVFIRLSPSGAASFNDAADNLQGKLHNALIGTAGLKGLVENLQEERVWKEFPNDQYGVLFMSFTLTYGHAWGDAFSTTY