3300025349: Thermal spring microbial communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter B (PS_B) MetaG (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025349
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0067861 | Gp0093346 | Ga0209670
• Sample Name: Thermal spring microbial communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter B (PS_B) MetaG (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 80754650
• Sequencing Scaffolds: 23
• Novel Protein Genes: 26
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	8
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	1
All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Thermocrinis → Thermocrinis ruber	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae	2
Not Available	3
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Thermus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → spring water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008426	Metagenome / Metatranscriptome	333	Y
F013155	Metagenome / Metatranscriptome	274	Y
F023604	Metagenome / Metatranscriptome	209	Y
F043237	Metagenome / Metatranscriptome	156	Y
F051572	Metagenome / Metatranscriptome	144	N
F057782	Metagenome / Metatranscriptome	136	Y
F063403	Metagenome / Metatranscriptome	129	N
F067776	Metagenome / Metatranscriptome	125	N
F069506	Metagenome	124	N
F073601	Metagenome / Metatranscriptome	120	Y
F075483	Metagenome / Metatranscriptome	119	Y
F075803	Metagenome / Metatranscriptome	118	Y
F084856	Metagenome / Metatranscriptome	112	N
F087246	Metagenome / Metatranscriptome	110	N
F096328	Metagenome	104	Y
F102748	Metagenome / Metatranscriptome	101	N
F104114	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209670_100125	All Organisms → cellular organisms → Bacteria	48922
Ga0209670_100332	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	29975
Ga0209670_101058	All Organisms → cellular organisms → Bacteria	13668
Ga0209670_102973	All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Thermocrinis → Thermocrinis ruber	5250
Ga0209670_103349	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	4593
Ga0209670_103524	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae	4320
Ga0209670_103540	All Organisms → cellular organisms → Bacteria	4308
Ga0209670_103588	Not Available	4234
Ga0209670_103598	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	4209
Ga0209670_104967	All Organisms → cellular organisms → Bacteria	2967
Ga0209670_105060	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	2909
Ga0209670_105942	All Organisms → cellular organisms → Bacteria	2438
Ga0209670_106144	All Organisms → cellular organisms → Bacteria	2339
Ga0209670_107475	All Organisms → cellular organisms → Bacteria	1865
Ga0209670_107853	Not Available	1755
Ga0209670_108100	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	1694
Ga0209670_109784	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Thermus	1333
Ga0209670_110655	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae	1189
Ga0209670_112157	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	1012
Ga0209670_112723	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	957
Ga0209670_119295	All Organisms → cellular organisms → Bacteria	543
Ga0209670_119582	Not Available	531
Ga0209670_119829	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	521

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209670_100125	Ga0209670_10012510	F063403	LVMEQSFDRQEALRALRVAIRSVRRTPIRIPFGDDERFFIEIRIPRFAERLDLQMAAELFLGGYESSERLLRSLPTIITAFRLPAEDDDGNFVQAIYNAEPLPDMPVINLTPTDLFSDDSAFNATPALMTVIITTLMTLSGRTQAVAAGVNALLELFPGTNQNSTDLLEQGSSGMPGDQ
Ga0209670_100332	Ga0209670_10033211	F084856	MERGDAMSDLSNLMIVTHLYTKEHAEALSLTLSEWRKLAPSSQIIVGYYQSRFQPSDFSNLMQDDAVEFVPVSNSSYGAAYDTLLERTIGKPILILAPYAVPKEWFIGANGSLLKWFESYAIIGRYKQPRILVSDAILMPLVAPVIVELGRLQMDCIAVREDVPRSVGYHEWWFGSILVRARPGAFLLYNALAAGYPVLTLPRNCNPVRYVKSETQMDKKIR
Ga0209670_100332	Ga0209670_10033223	F063403	LVMEQSFDRQEALRALRVAIRSVRRTPIRIPFGDDERFFIEIRIPRFAERLDLQMAAELFLGGYESSERLLRSLPTIITAFRLPAEDDDGNFVQAIYNAEPLPDLQVINLTPTDLFSDDSAFNATPALMTVIITTLMTLSGRTQAVAAGVNALLELFPGTNQNSADLLEQGSSGMSGDQ
Ga0209670_101058	Ga0209670_10105821	F104114	MERLRLWLSLTQDEKFAAAEKELKDAIVARYDEFADEWFLSRSVEDIAPSALADSIIQAVEALLGLQWRLEWDYDADADDMELDSGATTYWFKVSDPETGYVLTHKTSGMTGERLRYFKLIETFRDAVQAVVDLADIIAEKLPVVRSQVSLIKGGEVRWHTG
Ga0209670_102973	Ga0209670_1029731	F043237	MDLEKTARYIAQLSRHGYKYAVLGELSNYNRELVKRIDLEGFVFYLCRLQTKKEVISYCLQKADKPFKVYCLSSKPLEIPHMPLKLHYDEKTGRLRLLAQKSFINACLNAIEKASEVKYPSPKLYIAQVNKALRQLYSVLAHTYNDKERLRAIKRKVKHWVVEALKSQYGLKPKDAMLDYSRYVLKFSDVLRKKKSASVASATEGGRGRG
Ga0209670_103349	Ga0209670_1033493	F073601	VSLALGRAMLQAKATCLVMVLPAKRREGQRMFGLLHIAWRCAVKIMECGRIIRTLPVEKKALAGMGVLLQQG
Ga0209670_103524	Ga0209670_1035244	F013155	MELYQMAVIAIALANLAVTVWLLRLLLPVWQTLRKVVFALDHYDFDEISKKFLSNEKPLAETIDVKVSEKKEEGYRELTVTRVYKKPLDPREIQENFVRQMAEKLQ
Ga0209670_103540	Ga0209670_1035405	F023604	MAMDISVPKAAVKSRAVEKADLKGMRPPAGEEDKPWQAYANETNFCKVKIDYISN
Ga0209670_103588	Ga0209670_1035881	F063403	MEQSFDRQEALRALRVAIRSVRRTPIRIPFGDDERFFIEIRIPRFAERLDLQMAAELFLGGYESSERLLRSLPTIITAFRLPAEDDDGNFVQAIYNADPLPDLPVINLTPTDLFSDDSAFNATPALMTVIITTLMTLSGRTQAVAAGVNALLELFPGTNQNSADLLEQGSSGMPGDQ
Ga0209670_103598	Ga0209670_1035983	F051572	MTSRTHSGPFAEVRTFADVVLEGGCKKSLQFLNTHFDLCVLTVLIKTAPAGPMVKLRPEMVRRLVEEVAAAVGGGDRERIRNAMLKRAGEMMAQLRRELGDSAPSEAYVAKLAELFLKKLEA
Ga0209670_104967	Ga0209670_1049671	F075803	MTSLKALSASPSPAFMRFRTSASEVPNATLWPFLHNLHKPPLHKKLHFRRIPKKAFAIGGFDTTSPRMTLLRSLLEIFWNQGAALERRSTPSTPKGATFLFVYSYITPHGACRFWFAAHLRLHPVLESRVFIEPSLGEPHPYLICGSTLGTFPILNPEKEPTLPKCSFNSTPPEKNQKGYAYA
Ga0209670_105060	Ga0209670_1050604	F013155	MELYQVAVVVIALANLAVTVWLLRLLIPVWQTLRKVVFVLDQYDFDKLAKEFLSNEKPVAETIDIKVSEKQEEGYKELTVTRVYKKPLDPREIQENFVRQMAERLQ
Ga0209670_105942	Ga0209670_1059422	F008426	MSGTQYLSPLLQDPAWQALSRQLSVEARIAIFYLDELWKDERFQRDWTRLKEAYFEAQREAIAELRELFRKDFRTLTNAARKRAEALFLRGANEHASCLVRQLKEYVPDLIRDATWSYLFGRACEADREAEDEDSNRRKIYAISTENIYASRDPENFRLTEWELVRGFFSGELGELRLGIYYHDRRDRAHESFVAFSSKTPFFVPNTCAPLPSESKQDYLKRIKRDLEHELKLLAEPCSHRQPLILPRFLNKLKQLGYEFHNPRNAIPAILALAEDYYEKCDAERRNQVSNRSDATLCFYAKVVYQHKVKGLTHWKEIAGEIMPEGEDLEDWTDRVRKALPVAYELLGLPCEQKGENSENHP
Ga0209670_106144	Ga0209670_1061445	F087246	MDWEIWMDETYELCKALDAIQHARQVMAFHAQGYRQVATLAGLALERIEAVRGSQNWVQLHETMQEVGALLEAILLQATERAENLQECADGYADADLERR
Ga0209670_107475	Ga0209670_1074753	F104114	MERLRLWLSLTQDEKFAAAEKELKDAVVARYDEFADEWSLVRGVEDIAPSALAESVIQTVEALLGLQWRLEWDYDADADDMELDSGATTYWFKVSDPETGYVLTHKTSGMTGERLRYFKLIETLRDAVQAVVDLADIIAEKLPVVRSQVSLIKEVK
Ga0209670_107853	Ga0209670_1078533	F069506	MQSEQLTYTEEQIKQAIEEVWQELLQEADAEDYSLEEYLEDYRKYWDDPDFPNDVPELIMRTVEKIVGRPLSWYCELVRDPAGFTGEYSFVVVDPKTQKCLTYREYTFDGVNVHRFINVAGTVVNYEDIIRLVIKLLDQIQSALANA
Ga0209670_108100	Ga0209670_1081003	F075483	MIELLAVQAITTAALAFFVIKLRRELWPAVAVAGPQNLGFWIRSVDVMALSGPQFDVDKIVVRVRWTLTEELFLIHKLRIYDVAIHPYRRHHYVRWKAWMQGDDRYECEVEKPRGLARLYNKAIDVFCKEKEPPKEVIILPSKVRKRRYKRMLRQLREARRNSAEKPT
Ga0209670_109485	Ga0209670_1094852	F102748	MMNSLRAICCGRYNRAVGFLPKPSVLSKLAVVLLVCTLTLLCRQPTVADSASQHTQDVRVYKIRVDYTATIRYTDARGEVQEKSVQRACEFVFDTPISFEEAMSLIDGAFVTGVSSHNSLTHEVTKACSEQCRGVWCCWLGRNSKEWAWKPDGIWLASLY
Ga0209670_109784	Ga0209670_1097842	F096328	MTEAAYFWSKEAETILAPYVQALVGAEEPPEISSPLFAMPWDYSFNGLRVDLKLACKARSYRRISHRTLTDIRKSLESGVMVALFIPPRLYLLSPWDITWDGSLESLYICPSVSVPESVVQQVWSIYNRMTL
Ga0209670_110655	Ga0209670_1106551	F013155	MELYQVAVIAIALANLAVTVWLLRLLIPIWQTLRKIVFVLDQYDFDKLAKEFLSNEKPLAETIDVKVSEKKEEGYRELTVTRVYRKPLDPREIQEGFVRQM
Ga0209670_112157	Ga0209670_1121572	F013155	IALANLAVTVWLLRLLIPVWQTLRKVVFALDHYDFDKLARQFLGNEKPLAESVVVKTSQKEREGYREISIIRTYKKPLDTKEIQENFVRQMAERLQ
Ga0209670_112723	Ga0209670_1127231	F075483	MIELLAVQAVTTLALAFFVIKLRRELYPMIATAGPVHAGFWIRSIDVLVLATPQLEAAKTVIKIRRLLEEELFLKYSLKFYDVAMHPTSQHHYRMWKAWMQGDDRYKCEVEKPRGLSRLYNKAVEVFCREKKEE
Ga0209670_112723	Ga0209670_1127232	F013155	MELYQTIVVAIALANLAVTVWLLRLLIPVWQTLRKIVFVLDQYDFDKLAKEFLSNEKPLAETIDVKVSEKKEEGYKELTVTRVYRKPLDPREIQEGFVRQMAERLQ
Ga0209670_119295	Ga0209670_1192951	F057782	PLLEGREARGEGGAYTHVPSPFGALLVALYQFSAKGL
Ga0209670_119582	Ga0209670_1195822	F067776	MALMSLGYARVDKAPTFKTDPYPFVENLGQLADPEGRPLRDAYFSFEAPGMRGYVTRWG
Ga0209670_119829	Ga0209670_1198292	F013155	MELYQMVVIVIALANLAVTIWLLRLLIPIWQTLRKVVFALDHYDFDKLAKQFLSNEKPLAENVIVKTSEKKEEGYREISITRVYKKPLDAKEV