3300025235: Marine microbial communities from the Deep Pacific Ocean - MP1483 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025235
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0054668 | Ga0208206
• Sample Name: Marine microbial communities from the Deep Pacific Ocean - MP1483 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 104260121
• Sequencing Scaffolds: 17
• Novel Protein Genes: 17
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → SAR324 cluster → SAR324 cluster bacterium JCVI-SC AAA005	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1
All Organisms → cellular organisms → Bacteria	2
Not Available	8
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	3
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: South of Fiji, South Pacific Ocean
• Coordinates
  • Lat. (^o): -28.41
  • Long. (^o): 179.14
  • Alt. (m): N/A
  • Depth (m): 3501.1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020717	Metagenome / Metatranscriptome	222	Y
F031535	Metagenome	182	N
F040684	Metagenome / Metatranscriptome	161	N
F052659	Metagenome / Metatranscriptome	142	N
F054935	Metagenome / Metatranscriptome	139	N
F060979	Metagenome / Metatranscriptome	132	Y
F063768	Metagenome / Metatranscriptome	129	N
F066848	Metagenome / Metatranscriptome	126	N
F068928	Metagenome / Metatranscriptome	124	Y
F073662	Metagenome	120	Y
F076171	Metagenome	118	N
F080654	Metagenome / Metatranscriptome	115	N
F082562	Metagenome	113	N
F089571	Metagenome	109	N
F101336	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208206_1000400	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → SAR324 cluster → SAR324 cluster bacterium JCVI-SC AAA005	10423
Ga0208206_1001105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5845
Ga0208206_1001575	All Organisms → cellular organisms → Bacteria	4689
Ga0208206_1004931	Not Available	2301
Ga0208206_1007365	Not Available	1803
Ga0208206_1008127	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1695
Ga0208206_1008946	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1598
Ga0208206_1009943	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1499
Ga0208206_1010982	All Organisms → cellular organisms → Bacteria	1411
Ga0208206_1013764	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1225
Ga0208206_1014562	Not Available	1179
Ga0208206_1026469	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	799
Ga0208206_1029289	Not Available	745
Ga0208206_1033298	Not Available	683
Ga0208206_1039660	Not Available	607
Ga0208206_1042374	Not Available	580
Ga0208206_1043203	Not Available	571

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208206_1000400	Ga0208206_10004003	F052659	MLLSGNPGTETRSAVFIDGRLISSIPELNYQTIDKLQQGGVPDKVSWMKPSLRGRLRLVKLQAQERNLTIEDLNQSIRSKWVIL
Ga0208206_1001105	Ga0208206_10011054	F063768	MDLHATPDPLTTAEGVAEFVVLAELSTALSERLGGWSTDGADPDSSATMASLAARLDEHSTWWTGRIPESVLLEGERTAASGSGQLAEVLGLLDVAASDRRAAVEPVLDRLVAYLVALAERLSPLGDAPALRTIRLVLADLEDRPR
Ga0208206_1001575	Ga0208206_10015752	F089571	MLKNIIVIVFSVLFLVVPASSQHVQQKYAITDKDEKVILNDNGTWEYAEEDKQNYYYKKVPPKTYNYEFKSQTWEERIEQAAHEYWRIRAHAELEQLGIPVTRYDPTTSDVPLYLKLEGGRIRTDFDSFTPLARGEVIDISGLWDPDKGDNPTLKIQGKLFLQITMKLDDQKKLFSQYNQRNYIPIPDDFQRILEFRDSLDVISLGMHDYNRDNTHIWPGIPHSFLYAPPGSYYDPNNPPIIHGDGFPYIQRGHLTLSRREIPMTNSVYDNLLKRIDNLEGHGPIKIRYDMGKGIIETVTFEEVWLKINPYNGDPTHILKKVSLKKLE
Ga0208206_1004931	Ga0208206_10049312	F040684	MKRVIYLIILAMSLTLVFSQGKPCCKNKSGKGKVACKFNQANIDVNKDGTVIEDGTQIAAAGVQCPLRAQNTSINKKYCTNCAKSPWWKFWGKKKGCCNTNS
Ga0208206_1007365	Ga0208206_10073653	F076171	SKKAFYQSAKIDSSQFFRVINGFQKPGFGFFEKLAIAFPDLNLSWFLTGEGEMFTENLDYAEKTILENYRKLPDEGKIGFEVRTNLYEREYLEHKELMGNIVDVAMNNENKLPFMSWELYNCLQVLQNSRVNKIISIQKKPSKMAVFDTSELKSQLKSQLENTEADIQKLISLDAEYIKEFFTNTNE
Ga0208206_1008127	Ga0208206_10081271	F089571	NGTWEYLGEDKQNYTLKKVPPKTYNYDSKPQTWEERMEQAAHEYWRIRAHAELDRLGISVTKYDPTTSDVPLFIKLEGGRIRTDFDPFTPLARGEVIDIAGLWNPSKGDNPTLNIHGKLFLQITMKLEDQKKLFSQYKQRNYIPIPEDFQRILKFRDSLDVISIGMHDYNRDNTHIWPGIPHSFLYAPPGTHYDPYNPPIIHGDGFPYIQRGHLTLARREIPMTNSEYDNLLNHIDKLEGYGPIKISYDMGNGIIESITFEEIWLKINPYNGDPAHLLRKINLLKN
Ga0208206_1008946	Ga0208206_10089461	F089571	NGTWEYLGEDKQNYTLKKVPPKTYNYEFKPQTWEERLEQAAHEYWRIRAYAELNQLGIPVTRYDPTTSDVPLYLKLEGGRIRTDFDPFTPLARGEVINIAGLWNPDRGDNPTLKIQGKLFLQITMKLVDQKKLFSQYNQRNYIPISEDFQRILKFRDSLDVISLGMHDYNRDNTHIWPGIPHSFLYAPPGSPYDPDNPPVIRGDGFPYIQRGHLTLARREIPMTNAEYENLIKHIDKLEGHGPIKVSYDMGDGIIETVTFEEVWLKINPYNGEPTRILRKISLLKK
Ga0208206_1009943	Ga0208206_10099431	F082562	MNNIILMKTIILGILITLSTNLFAQTNDSLRNYFLDIELSIIHPILGGFGGTIGIERNHSSFGVMGFGTKLNHMMKHYFIEDAEELAVYNWGVELYSDYYIKQNHRGLFIGSLVSINGFRFTDIPNPQTILVLYAVPRVGYRIYLPKKLNAFYFQPSLTAHIKFWDNQEQFLYREIDTKSIFLLSQLTLGMKI
Ga0208206_1010982	Ga0208206_10109821	F066848	MRFSTRSIHSLRHPQDDVYRAVSTEVGPGFAMGSSDHVLRTVLKGARQIAADQRLPVDPVAKGAGSEPELNL
Ga0208206_1013764	Ga0208206_10137641	F031535	TDNIIARGPKNTRAYVAIASANQLRGLTNEVNHFQVPFKTFEFYTVNIE
Ga0208206_1014562	Ga0208206_10145622	F080654	VAEAISEEKTESEPFGKTNLEERQDLWNKIQKFDPEASAMDYYDNGGWDLEKMRSDLKVLLEKERFGK
Ga0208206_1026469	Ga0208206_10264691	F060979	VTTTTEDEQLASIALGDGDGGSQPPIQDDDSGGSFLTDPGTLAAAAGVAAAVGLGLSGLGSKLLGGLLRFLGGTGFGLFLIGLFRRDKRPGPPIDFTIFTDGPLTHLEWSSPTTGGPAEKYVLEGRKDGRWGELLDFDAENTRAAVPTSEVEGAEAWRLRAVNDHGMGKPSDAVGVLEAEVDPDLAEGEVAEESDSGTDGA
Ga0208206_1029289	Ga0208206_10292891	F068928	IVRLKAQLSDTEDRLSEMKEKNDEMAIKLYGGNRNR
Ga0208206_1033298	Ga0208206_10332981	F020717	ISIVACTRFLALLETTQCWDFLRPHHILHENKDIWCFRDLNEQKDISISALILMLSEN
Ga0208206_1039660	Ga0208206_10396602	F101336	SFIPTKTALVGEPSLTSVDPFVSKGTAKTSLCGNSWQATY
Ga0208206_1042374	Ga0208206_10423742	F073662	PSMLPRFDAFLRPTILKMQNKEIMLINSKKYLIIFI
Ga0208206_1043203	Ga0208206_10432032	F054935	MKRRTFIKYTSLISTAVFLPLAQLFGAKPKPKNPFTTFDFNLPLQGSPFRKNCDSLDNYNDISFKTMIDDIVHYRTPAKLRDKLILGIKTEDD