Sample 3300025219

Basic Information
IMG/M Taxon OID	3300025219 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0053074 \| Gp0054069 \| Ga0208470
Sample Name	Marine microbial communities from the Deep Atlantic Ocean - MP0740 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300025219 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0053074 | Gp0054069 | Ga0208470

Sample Name

Marine microbial communities from the Deep Atlantic Ocean - MP0740 (SPAdes)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	103592064
Sequencing Scaffolds	32
Novel Protein Genes	36
Associated Families	35

Dataset Contents

Total Genome Size

103592064

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1
Not Available	17
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Odoribacteraceae → Odoribacter → Odoribacter splanchnicus	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium PRS2	1
All Organisms → cellular organisms → Bacteria	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota

Not Available

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Odoribacteraceae → Odoribacter → Odoribacter splanchnicus

All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium PRS2

All Organisms → cellular organisms → Bacteria

Ecosystem Assignment (GOLD)
Name	Deep Ocean Microbial Communities From The Global Malaspina Expedition
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Ecosystem Assignment (GOLD)

Name

Deep Ocean Microbial Communities From The Global Malaspina Expedition

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → marine water body → sea water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	South Atlantic Ocean
Coordinates	Lat. (^o)	-31.81	Long. (^o)	6.84	Alt. (m)	N/A	Depth (m)	4001.3
Location on Map

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Location Information

Location

South Atlantic Ocean

Coordinates

Lat. (^o)

-31.81

Long. (^o)

6.84

Alt. (m)

N/A

Depth (m)

4001.3

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001487	Metagenome	686	Y
F001625	Metagenome / Metatranscriptome	661	Y
F001651	Metagenome / Metatranscriptome	657	Y
F002030	Metagenome	601	Y
F002753	Metagenome / Metatranscriptome	532	Y
F003285	Metagenome / Metatranscriptome	496	Y
F007608	Metagenome / Metatranscriptome	348	Y
F008720	Metagenome	329	Y
F010879	Metagenome / Metatranscriptome	298	Y
F012070	Metagenome	284	Y
F012072	Metagenome / Metatranscriptome	284	Y
F012509	Metagenome / Metatranscriptome	280	Y
F016015	Metagenome / Metatranscriptome	250	Y
F016206	Metagenome / Metatranscriptome	249	Y
F038414	Metagenome	166	Y
F040148	Metagenome / Metatranscriptome	162	Y
F049927	Metagenome	146	Y
F060984	Metagenome	132	Y
F063198	Metagenome / Metatranscriptome	130	N
F064788	Metagenome	128	Y
F064802	Metagenome / Metatranscriptome	128	Y
F065861	Metagenome / Metatranscriptome	127	Y
F066848	Metagenome / Metatranscriptome	126	N
F069334	Metagenome	124	Y
F076171	Metagenome	118	N
F076187	Metagenome	118	Y
F081449	Metagenome / Metatranscriptome	114	Y
F082562	Metagenome	113	N
F082813	Metagenome	113	Y
F085813	Metagenome	111	N
F089159	Metagenome	109	Y
F089571	Metagenome	109	N
F090504	Metagenome	108	N
F101292	Metagenome / Metatranscriptome	102	N
F105490	Metagenome	100	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0208470_1006033	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	2240	Open in IMG/M
Ga0208470_1007434	Not Available	1997	Open in IMG/M
Ga0208470_1008396	Not Available	1859	Open in IMG/M
Ga0208470_1008605	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1832	Open in IMG/M
Ga0208470_1014635	All Organisms → Viruses → Predicted Viral	1337	Open in IMG/M
Ga0208470_1014878	All Organisms → Viruses → Predicted Viral	1323	Open in IMG/M
Ga0208470_1015250	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1303	Open in IMG/M
Ga0208470_1015310	Not Available	1298	Open in IMG/M
Ga0208470_1017250	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium	1203	Open in IMG/M
Ga0208470_1018313	Not Available	1158	Open in IMG/M
Ga0208470_1021037	Not Available	1058	Open in IMG/M
Ga0208470_1021763	Not Available	1035	Open in IMG/M
Ga0208470_1021943	Not Available	1030	Open in IMG/M
Ga0208470_1025510	Not Available	933	Open in IMG/M
Ga0208470_1025942	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	922	Open in IMG/M
Ga0208470_1027555	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	884	Open in IMG/M
Ga0208470_1028297	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	869	Open in IMG/M
Ga0208470_1028951	Not Available	856	Open in IMG/M
Ga0208470_1032494	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	788	Open in IMG/M
Ga0208470_1035323	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Odoribacteraceae → Odoribacter → Odoribacter splanchnicus	744	Open in IMG/M
Ga0208470_1037408	Not Available	714	Open in IMG/M
Ga0208470_1038759	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium PRS2	696	Open in IMG/M
Ga0208470_1041516	Not Available	661	Open in IMG/M
Ga0208470_1041884	Not Available	657	Open in IMG/M
Ga0208470_1042267	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	653	Open in IMG/M
Ga0208470_1045426	Not Available	619	Open in IMG/M
Ga0208470_1046702	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
Ga0208470_1047454	Not Available	600	Open in IMG/M
Ga0208470_1049923	Not Available	577	Open in IMG/M
Ga0208470_1050931	Not Available	568	Open in IMG/M
Ga0208470_1053299	Not Available	548	Open in IMG/M
Ga0208470_1060069	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	500	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208470_1006033	Ga0208470_10060331	F076187	INPALTVSVIICPDGLVSVAITHFFEFISTEKFFENFKTSRNVKSFPNIPLIPDTDIFNASNLDTLFINSERK
Ga0208470_1007434	Ga0208470_10074341	F012070	MPIEIKMIEAANESYDDYILYEILCDYCDKEYTIKYMMNKRPKQSIECCPFCSNLIEEPAEIIDDEEET
Ga0208470_1008396	Ga0208470_10083962	F060984	RGIRLADDIEREEDRNSFASVKVKVPKEATTEVEIELSTDDLLTLTLAAHDRDITLNQLCNSVLRASLKDLDYRFEHQSKPQVLKEY
Ga0208470_1008605	Ga0208470_10086052	F066848	MRFSTRSIHSLRHPQDDVYRAVSTEVGPGFAMGSSDYVLRTVLKGARQIAADQRLPVDPVAKGAGSEPELNLVA
Ga0208470_1014635	Ga0208470_10146351	F012509	MSDYSTEDIVKYSISSDGSRVKDAIQSVVANKIMKGMEAKKAEVAQAMFNTVPLPDATQEVADTFVAA
Ga0208470_1014878	Ga0208470_10148782	F008720	MEVVQTEDKSFVRDLHSKALINTDRVALENHRKKRQMEIQQARKWQQMETKVKELNNMRNEILEIKGLLQELLNKKEL
Ga0208470_1015250	Ga0208470_10152501	F082562	DSLRNYFLDIELSIIHPLLGGFGGTIGIERNHSSFGVMGFGTKLNHMMKHYFIEDAEELAVYNWGVELYSDYYIKQNHRGLFIGSLVSINGFRFTDIPNPQTILVLYAVPRVGYRICLPKKLNAFYFQPSLTAHIKFWDNQEQFLYREIDTKSIFLLSQLTLGMKI
Ga0208470_1015310	Ga0208470_10153102	F063198	LYIVRMRLEENSLISEDRLILNAPSKIRINRVKVVNTGATEARSSGDVYPNPLGPIRNPSIIRNKTSGMFVRRNNASDKKPKIAIKLNASNAVLTFKILGEY
Ga0208470_1017250	Ga0208470_10172501	F001651	GTGHGGRLTLPKGHSKWMTIGGKPIPEGGYIVPLQNGKKIALAQRRHRVIQAKIEGRSEAQIAEQEGVVQYTIWKDIRAYLGEVRREDKAAVQAEYDLQRARYERLLLRWWDHAIGEDSDHAARATGIVLDILRRLDTIGGLIPEKPLIQLQQQNVMVGGVTFADLLREAMDGAGA
Ga0208470_1018313	Ga0208470_10183134	F012072	MKKYHIKIKDKVVHRTDDMKKALRVIGQIFRDGHGEVSLHGGKIGK
Ga0208470_1021037	Ga0208470_10210372	F090504	MEVFVVLTIIFGLILPYWAGVMAKRKGKSFVLWCILQVLFLFPIVLIAFHSPVEKEK
Ga0208470_1021763	Ga0208470_10217632	F016015	MINVNKFENRIVKFKRIDSEGNISDKEAEVRRMDYNQTEDIPRSVTARLVDPLNFVITLSYDKSKKKFSGPLGTDIWESNFDIDDFITSSKMGTADRYMRSPKRNRARF
Ga0208470_1021943	Ga0208470_10219432	F105490	MKGGQGKHDRQEGAIERIEPTIEKYEKILPAEKELLKLMRKEKDLPPNNIPMMEKKIKQFEKKLERAKMTLENTKANLNG
Ga0208470_1025510	Ga0208470_10255103	F064788	MKYTEKQVNFLKAAIAKYGEGSILTKSNLAEVAEDIGVKFPFWMTDARRSGSYTKIGKDMYRLPAINGGEGASVADIVVDEASEVVIESKNKESAFDMSTYFNPAELIPKKDPLFVAHGHFSDLIKVL
Ga0208470_1025942	Ga0208470_10259421	F049927	IAVPTTDKAVGNVDKDFIEVICDPIIPLKKTVIVAAVNPKT
Ga0208470_1027555	Ga0208470_10275551	F089571	NERKMLKKIIVIVFSVLFLVVPASSQHVQQKYAITDKDEKVILNDNGTWEYAEEDKQNYYYKKVPPKTYNYEFKSQTWEERLEQAAHEYWRIRAHAELEQLGIPVTRYDPTTSDVPLYLKLEGGRIRTDFDSFTPLARGEVIDISGLWDPDKGDNPTLKIQGKLFLQITMKLDDQKKLFSQYNQRNYIPIPDDFQRILEFRDSLDVISLGMHDYNRDNTHIWPGIPHSFLYAPPGSYYDPNNPPIIHGDGFPYIQRGHLTLSRREIPMTNSVYDNLLKRIDNLEGHGSIKIRYD
Ga0208470_1028297	Ga0208470_10282971	F081449	NSGDAYGDIVSVDRHGQGKPTGKKLTVKVELHKVDPYKIWWIGEKTFTHRGQEETFVRFTIDQEGKQVGGFTYEKKKFVTPFGNMGVVNPNRNEPTGASSLESGTEESRYHPGDRR
Ga0208470_1028297	Ga0208470_10282972	F002030	MIGFLIFGLVVLSTICLWILIEERKSWKFLIWFIPILLVIVTSTYVTYTSILGLPKVGIPEKGLYLRHYIDEPNWIYLWVLSKKNVPMSYQLVYSREKHNALEGVKGQAAEGAFMVLGEDESLGPGDGEGDQKGGRSGEGYTIGGDISFYKWDFTDNMPPKNTQE
Ga0208470_1028951	Ga0208470_10289511	F007608	SMYPKIRQQVTDRIATFEKVIEEHAVAQKEALKMIYEQLEEAKNDLKYLDEVN
Ga0208470_1032494	Ga0208470_10324941	F089571	LITPVSSQHVQQKYAITDMDEKVFLNDNGTWEYLGEDKQNYTLKKVPPKTYNYEFKPQTWEERLEQAAHEYWRIRAYAELNQLGIPVTRYDPTTSDVPLYLKLEGGRIRTDFDPFTPLARGEVINIAGLWNPDRGDNPTLKIQGKLFLQITMKLVDQKKLFSQYNQRNYIPISEDFQRILKFRDSLDVISLGMHDYNRDNTHIWPGIPHSFLYAPPGSPYDPDNPPVIRGDGFPYIQRGHLTLARREIPMTNSVYDNLLKRI
Ga0208470_1035323	Ga0208470_10353231	F076171	MTDLKEDHSHPFNSRLEEFRNHVDLKSKKAFYQLAKIDSSQFFRVINGFQKPGFGFFEKIANAFPDLNLSWLLIGEGEMILDRVNDAEKTILENYRKLPDEGKIGFEVRTKLYEWEYMEYKELMGNIVDVAMNNENKLPFMSWELYNCLQVLQNSRVNKIISIQKKPSKMAVFDTSELKSQLKSQLENTEADIQKLISLDAEYIKEFFTNTNE
Ga0208470_1037408	Ga0208470_10374082	F001487	MKKFTIEVSHASPAQLTTIGLELKIMSNGWEKFGLRIKINGQELQAPSL
Ga0208470_1038759	Ga0208470_10387592	F065861	MGIIIVIRRKISLIYRENSIIFDLPFRVVLFMIRGEIIGRNNNSAVLPTLEEGLLHKNKLVLNCLT
Ga0208470_1039115	Ga0208470_10391152	F089159	VSIGKDNLLQAIVQEDNKDSTGFAVKEDIKENHVEDVIARRISQRLQLDSVKINFSAPGDSSREVGDLISFDFPTENSKVAATSGRGAGHKYYSGKFLITSLRHKITQDEYTIHVEAIKDGYKSAISSTFEATAPTVQIPNPKTGLTESPSQNITLGGGLGGGNDSFR
Ga0208470_1041516	Ga0208470_10415163	F038414	MTDELNKKRTSPKTIQIQDSKTARSKAEWLHISTSEEDGEGQGTYNVGSRAMKRERLADKKLRAKQAKAADLS
Ga0208470_1041884	Ga0208470_10418841	F001625	MALTISTSDWTSANVRKTLSWQAALVSKLRVYAIKVTFGSGDNYATNGVSADLKEGRISTLVAVIPTYNNGSHIVVYDKANEKIKLFGSGSGSALTEV
Ga0208470_1042267	Ga0208470_10422673	F085813	DQFEIIWILATVIGALNYGLNAYQKGFRRLLKWDVIYLIILNTLMFVPLSLIVVL
Ga0208470_1045426	Ga0208470_10454261	F040148	KVGKVSMEKLAVLPDSTPPDFGGIQIKEIIPGWGEFFQILENFVKQLKGMISDSVAFIQDMIDMIKGIEKFLQDLIDAIVEFLEFFQITLPSTGVYALYLPNQSGGNDGIKSQLAGAGGIPDLGYAAGILFVATEGDVFIAGGGSKNPIDLLALVLGLL
Ga0208470_1046702	Ga0208470_10467021	F003285	KSDRLNYLMPEQESIHQLQTEIQTLKIKDEFRTKELDALMEKLSDTSSKLNALSENIGRLLAGQELHKTSDNEVRDELKILHTRIGDLHDKCTEMIDKTETRVSSDISLLYKKVDSLEKWRWITIGVATVIAWLLTNIIPKFLSN
Ga0208470_1047454	Ga0208470_10474541	F069334	MTQKYDRFNLESEIMHVWNTKDDLESITSRMMDDPD
Ga0208470_1049923	Ga0208470_10499232	F101292	VIKNANAVMANVPAKDVKRENLATATVIVPAVKKNAAALNKIKLL
Ga0208470_1050931	Ga0208470_10509311	F064802	SCLKEQETFSVMECVHMQQHVLQMSVKVLKTEETIRDLILFTKEKLLHENVDPTGMLPQTLIPPPLIDIPDDERRGVIKALRWVVSDEDIFQRE
Ga0208470_1050931	Ga0208470_10509312	F082813	MKIYFNANNKATLEALEGCGVRNVLLSHRYSYANINKFKSKFDSIFIVPGTKGNPDKYREFLKKKKEYYDYATQFDVFYNMDETLKYLEKEREDGIDWTLPV
Ga0208470_1053299	Ga0208470_10532991	F002753	LTDSDRFTPAVLDVSSVNDTDSVRFTPADFAIESVNDTDSVRFTSADFAIESVNDIDSDRFTPAAFAIESVKLTDSDRFTPAAFAIESVKLTDSDRFTPAVFEIESVNDIDSDRFTPAVFDVSSANDTDSDRFTPAVFEIESAKLTDSDRFTPADFAIESVKLTDSDRFTPATFDIESANNT
Ga0208470_1060069	Ga0208470_10600691	F010879	MAQKRKVLKEVLFDDVEKKIEYDFLTRDQFFTKVPETRPMSVRGIEMWERYLQDPKG
Ga0208470_1060069	Ga0208470_10600692	F016206	MAHAHKGKKKVSKAMGAILKAPKKVEKVVKAAEKYVNKTHWDTKEAFAAAIDASGINPNAINVNSEWDFYQSDKDGYKNHLKLEN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300025219: Marine microbial communities from the Deep Atlantic Ocean - MP0740 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences