Sample 3300024037

Overview

Basic Information
IMG/M Taxon OID	3300024037 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0132900 \| Gp0272158 \| Ga0233355
Sample Name	Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-Q75
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	22778671
Sequencing Scaffolds	8
Novel Protein Genes	8
Associated Families	8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1
Not Available	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Chondrichthyes → Elasmobranchii → Selachii → Galeomorphii → Galeoidea → Orectolobiformes → Hemiscylliidae → Chiloscyllium → Chiloscyllium punctatum	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	forest biome → solid layer → forest soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	USA: California
Coordinates	Lat. (^o)	40.2523	Long. (^o)	-123.026	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F008145	Metagenome / Metatranscriptome	338	Y
F010196	Metagenome / Metatranscriptome	307	Y
F023884	Metagenome / Metatranscriptome	208	Y
F036627	Metagenome	169	Y
F040609	Metagenome / Metatranscriptome	161	Y
F053496	Metagenome	141	Y
F079081	Metagenome / Metatranscriptome	116	Y
F092928	Metagenome / Metatranscriptome	107	Y

Scaffold	Taxonomy	Length	IMG/M Link
Ga0233355_100385	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	935	Open in IMG/M
Ga0233355_100481	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	878	Open in IMG/M
Ga0233355_101689	Not Available	621	Open in IMG/M
Ga0233355_102013	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
Ga0233355_102732	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	548	Open in IMG/M
Ga0233355_102956	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	536	Open in IMG/M
Ga0233355_103107	Not Available	530	Open in IMG/M
Ga0233355_103677	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Chondrichthyes → Elasmobranchii → Selachii → Galeomorphii → Galeoidea → Orectolobiformes → Hemiscylliidae → Chiloscyllium → Chiloscyllium punctatum	506	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0233355_100385

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

935

Open in IMG/M

Ga0233355_100481

All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium

878

Open in IMG/M

Ga0233355_101689

Not Available

621

Open in IMG/M

Ga0233355_102013

All Organisms → cellular organisms → Bacteria

593

Open in IMG/M

Ga0233355_102732

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

548

Open in IMG/M

Ga0233355_102956

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

536

Open in IMG/M

Ga0233355_103107

Not Available

530

Open in IMG/M

Ga0233355_103677

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Chondrichthyes → Elasmobranchii → Selachii → Galeomorphii → Galeoidea → Orectolobiformes → Hemiscylliidae → Chiloscyllium → Chiloscyllium punctatum

506

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0233355_100385	Ga0233355_1003851	F079081	MIESFKHLEALAAERDLADVFLETDEQEHAVPAEMIVEALRKRRAVMRDCVERGRNSDGASMGRLVGGEARLLQQAFTEGRTFLDPLTIKAEL
Ga0233355_100481	Ga0233355_1004811	F092928	AAFEEMVLAQGLGDADREAPRDEEGDRGPGAPAGRDHAPHMG
Ga0233355_101689	Ga0233355_1016892	F010196	VTGVRLLIGVIVMGIAVPITLFLLLGLHTMPQLFTMATVTLLAWGVADLLSMILEKPRLQGRSPGKALKEDWDRRSQE
Ga0233355_102013	Ga0233355_1020131	F023884	FVSNARQRNLGRVAYCESLPHRLWVTLSRVRTAKGAWDIWYLISNRGRRAQATAAEYARRFGCEQGFRDAKWELGFAQARIQNIRAWSRLFALFALALLVVVSLGGKLLVRGGAEAVALLRRVASRRRGRWDLSVVSAIVALLHTDKSLFAHLSPRITLDLEASLANVS
Ga0233355_102732	Ga0233355_1027321	F053496	VSVTAEVVWTSLKAITGSAQRTFRAGLLVAEKAELMRLAIGRLSDMNRAALDLHSLRLKLRILRARARQLAPSYPQIEESGIPAEQYLLIQGVREELRLNPEEAMHWYRRARLIINDPATREAAPPIANHPDALAVWEYLDRSVDPSIVSRAFELP
Ga0233355_102956	Ga0233355_1029561	F008145	MPVRGEEVASSIDAHVRESIERMVGEIRSSIEDVRVAVDQQLKAALQSVQADVNSITFLPQIRKSVVELEETMAAEAPVAAPAAPSVGGASRVKAAVQAIESGRSQVDVLNALLEQSLQFGSRAALLILRGETFSGWKGVGFSAQGGNDEMVKRFNAAPGLIP
Ga0233355_103107	Ga0233355_1031071	F036627	MKSDTEIVETSNQNNQMQDIESFKTNPNSLKLDHRKLR
Ga0233355_103677	Ga0233355_1036772	F040609	MQEGDALNALTFPALAFAGLLRRTRLFVPVRLRRGITTTTAAGTARAF

Scaffold ID

Protein ID

Family

Sequence

Ga0233355_100385

Ga0233355_1003851

F079081

MIESFKHLEALAAERDLADVFLETDEQEHAVPAEMIVEALRKRRAVMRDCVERGRNSDGASMGRLVGGEARLLQQAFTEGRTFLDPLTIKAEL

Ga0233355_100481

Ga0233355_1004811

F092928

AAFEEMVLAQGLGDADREAPRDEEGDRGPGAPAGRDHAPHMG

Ga0233355_101689

Ga0233355_1016892

F010196

VTGVRLLIGVIVMGIAVPITLFLLLGLHTMPQLFTMATVTLLAWGVADLLSMILEKPRLQGRSPGKALKEDWDRRSQE

Ga0233355_102013

Ga0233355_1020131

F023884

FVSNARQRNLGRVAYCESLPHRLWVTLSRVRTAKGAWDIWYLISNRGRRAQATAAEYARRFGCEQGFRDAKWELGFAQARIQNIRAWSRLFALFALALLVVVSLGGKLLVRGGAEAVALLRRVASRRRGRWDLSVVSAIVALLHTDKSLFAHLSPRITLDLEASLANVS

Ga0233355_102732

Ga0233355_1027321

F053496

VSVTAEVVWTSLKAITGSAQRTFRAGLLVAEKAELMRLAIGRLSDMNRAALDLHSLRLKLRILRARARQLAPSYPQIEESGIPAEQYLLIQGVREELRLNPEEAMHWYRRARLIINDPATREAAPPIANHPDALAVWEYLDRSVDPSIVSRAFELP

Ga0233355_102956

Ga0233355_1029561

F008145

MPVRGEEVASSIDAHVRESIERMVGEIRSSIEDVRVAVDQQLKAALQSVQADVNSITFLPQIRKSVVELEETMAAEAPVAAPAAPSVGGASRVKAAVQAIESGRSQVDVLNALLEQSLQFGSRAALLILRGETFSGWKGVGFSAQGGNDEMVKRFNAAPGLIP

Ga0233355_103107

Ga0233355_1031071

F036627

MKSDTEIVETSNQNNQMQDIESFKTNPNSLKLDHRKLR

Ga0233355_103677

Ga0233355_1036772

F040609

MQEGDALNALTFPALAFAGLLRRTRLFVPVRLRRGITTTTAAGTARAF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300024037: Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-Q75

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences