Sample 3300023691

Basic Information
IMG/M Taxon OID	3300023691 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0131212 \| Gp0267128 \| Ga0228704
Sample Name	Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 1-17_Aug_MT (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 1-17_Aug_MT (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	42770437
Sequencing Scaffolds	29
Novel Protein Genes	35
Associated Families	31

Dataset Contents

Total Genome Size

42770437

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1
Not Available	23
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Tricholomatineae → Lyophyllaceae → Hypsizygus → Hypsizygus marmoreus	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

Not Available

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Tricholomatineae → Lyophyllaceae → Hypsizygus → Hypsizygus marmoreus

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4

Ecosystem Assignment (GOLD)
Name	Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Ecosystem Assignment (GOLD)

Name

Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Type

Environmental

Taxonomy

Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater biome → bayou → fresh water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

freshwater biome → bayou → fresh water

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Georgia
Coordinates	Lat. (^o)	33.9406	Long. (^o)	-83.5607	Alt. (m)	N/A	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Location Information

Location

USA: Georgia

Coordinates

Lat. (^o)

33.9406

Long. (^o)

-83.5607

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000212	Metagenome / Metatranscriptome	1580	Y
F000237	Metagenome / Metatranscriptome	1498	Y
F000344	Metagenome / Metatranscriptome	1257	Y
F001233	Metagenome / Metatranscriptome	741	Y
F001583	Metagenome / Metatranscriptome	668	Y
F004452	Metagenome / Metatranscriptome	437	Y
F005001	Metagenome / Metatranscriptome	415	Y
F017604	Metagenome / Metatranscriptome	239	Y
F018868	Metagenome / Metatranscriptome	232	Y
F019442	Metagenome / Metatranscriptome	229	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0228704_104588	All Organisms → Viruses → Predicted Viral	1057	Open in IMG/M
Ga0228704_107471	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	844	Open in IMG/M
Ga0228704_108182	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	812	Open in IMG/M
Ga0228704_108412	Not Available	802	Open in IMG/M
Ga0228704_108441	Not Available	801	Open in IMG/M
Ga0228704_108482	Not Available	799	Open in IMG/M
Ga0228704_108629	Not Available	794	Open in IMG/M
Ga0228704_108710	Not Available	791	Open in IMG/M
Ga0228704_109698	Not Available	755	Open in IMG/M
Ga0228704_113393	Not Available	653	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0228704_104588	Ga0228704_1045883	F020197	MVENQKPFSQGYVLRTTAKHMRKSIDISIRKTFERVKEFEGNQEKSTEVFMTLANLHAMRKQLDDFQQANQDQFRGA
Ga0228704_106766	Ga0228704_1067661	F000237	LGGYAFFXFHYIVALGISLSATHLSDLTLTIIANIYXSVFNNIYKTYYIIFTNKHLNIDQMTRLMILHYFTPXYYLYLIQLHVLFCHESXDSDSGESTYEDKSGSYISXFYDAFLKEIQDAXYXTMFVFIYFXLHHFNPSTVNYFFFERXNIAELDEIRFYGVAPHXYFRPLMGLLVISPTHYEGLMXMGLFFILLTFLPIIYNXYNVYNKHVPSIPMQNSLLQTFAFIIFMMSLFCSASMLPCGRYYYEPEGGYVGNPXVKFSYQYIYLYMAXFVHHLDLIDHYIFQFFQTF
Ga0228704_107471	Ga0228704_1074712	F038530	MRPKASHAAVSSVGKHTARESEAPNAVRMEKSAWRAPTSDFGPGSARSPGLNL
Ga0228704_108182	Ga0228704_1081821	F078768	LRWAAAVIRLKSNVSRIIPGDWGKVESGWLVQLLS
Ga0228704_108412	Ga0228704_1084121	F018868	MRPRASHAAMSGVGEHTARESEAPNVCAGEERVASAH
Ga0228704_108441	Ga0228704_1084411	F033058	LPEAVADPVLSGKDAEESHKCVFTWSAGRWRNHQPKWAKRPHSKFSDREVLDGPAMRPQTPLAVENGVGKPAAPEAPNVGMGKRAWRTP
Ga0228704_108482	Ga0228704_1084821	F026808	RLINTHITHTHLLIHSRSFCLVMVNRGGKRKSGGARRSSGGPRAPSFVFEPGEQRLRLDDLFQSATIEEGEVEGTVELGGLTFPPSSARVLGWTITVSAVHGDVQFRTGLGHAKTARVVVPCPFPRPAAVSAPEVNFFGPEAATFGVFGSVTVYFKSQ
Ga0228704_108629	Ga0228704_1086292	F000344	MRPKHPLAAESGVGEHTARESESAQACVIGKERVANA
Ga0228704_108710	Ga0228704_1087101	F041277	MRPETPLAVENGVGELAAHEAPNASDMGKRAWRAP
Ga0228704_109698	Ga0228704_1096981	F069751	VASGQRTAKSGGRPDASGEDADVSHKRVFSWFAGRRRKRQPKRAKRPHSKSSGRKALDGPATRPATPLAVENSVGKLAAIGAQCQHGKESVANS
Ga0228704_112368	Ga0228704_1123681	F017604	MSKGCDETVGDTSGDNPDPESPQKRRSQAARKGGRERGRAHEETRSLTRRDSEAQMSGRLGPKQ
Ga0228704_113305	Ga0228704_1133051	F024036	KSGSYISXFYDAFLKEIQDAXYXTMFVFIYFXLHHFNPSTVNYFFFERXNIAELDEIRFYGVAPHXYFRPLMGLLVISPTHYEGLMXMGLFFILLTFLPIIYNXYNVYNKHVPTIPMQNSLIQTSAFIIFMMSLFCSASMLPCGRYYYEPEGGYVGNPXVKFSYQYIYLYMAXFVHHLDLIDHYIFQFFQTFIRKCLKLYKKNINIMKNTVSKFINFS
Ga0228704_113393	Ga0228704_1133931	F065443	FSQASGASLIQVASSAKSHLANFAAKMKEMSHKLSKHGSMYSPLIHELVQLTQDVDASEVSEVVGLLNQLLNLLNDALRDLLAQQAAYEADYAAHVQTANDNLAAYQSNMDYAASQAYEIGAQDVQANAQLAQAQQNLEDAQNALATNEANFDNNEAVYADQRPRYDELIAIIERLIAHFNDNVAAVDEWTANQINGSA
Ga0228704_115387	Ga0228704_1153871	F078742	VEELSVGTSSDFIDNGGFQIEEDGSGHVLAGTSLREEGVEGIITTTDGLVGGHLTIRLDSVLETEEFPAGVTDLDTTLTDVN
Ga0228704_116786	Ga0228704_1167861	F037738	FQVIRFPALLTTGMHGTEHCNRKRRTFRLSAPLKLGFPRLRINASWLAAAYLLPTGTGNS
Ga0228704_117786	Ga0228704_1177861	F081359	LKRETAVCREASIQGKRNQTLGSRTAERSALLDEMLSTVHAGDELGWKSGHL
Ga0228704_118225	Ga0228704_1182251	F004452	VCREALILGERNRPWGSGTAGHPALLNAVLSSVHAGGEQGWESGHL
Ga0228704_118370	Ga0228704_1183701	F001583	DLTLTIIANIYXSVFNNIYKTYYIIFTNKHLNIDQMTRLMILHYFTPXYYLYLVQLHVMFCHESXDSDSGESTYEDKSGSYISXFYDAFLKEIQDAXYXTLFVFLYFWLHHFNASTVNYFFFERXNISELDEIRFYGVAPHXYFRPLMGLLVISPTHYEGLMXMALFFILLTFLPIIYNXYNVYNKHIP
Ga0228704_119133	Ga0228704_1191331	F022652	RVHGTIERTTRMLSVRSAAKCAFSFVQGSPRPHFSLPRVNASNAFIGLRTLPEPVSRCGLSLTRNDAFAPFRGQSSRPAPSIPHRISSRVRSISGSSAPFGFEADPGRSRRPTPVSRANLRRSRGSHPPPLPFRPFQAFRIKAFSWLPPREAHLTGLRSPLTLRCDFFRFRPGSFTVRCVPPDKSF
Ga0228704_119252	Ga0228704_1192521	F066797	LYSHQIISSADLGGSSNYSKETLLNKAVLILKTEVAKVFMTMEITHELVDPNPKDYEK
Ga0228704_119444	Ga0228704_1194441	F100490	LLRSLELGAVSHRTVLLLWDQKRLLRMRDRYGGPKKHLPTPGLML
Ga0228704_119708	Ga0228704_1197081	F005001	GMHGMEPREQKRRTIRLSAPRWPFSPAPGSMLPGSPLAAFCPEPVARNGLSLTRNECHLSATSIPGSKLLTCCFASFQTGLGARSALQLHYRKFRIAPAAAASSPVARCTSTRPVQPAAPTVSTRLREFSLPRGQSVQRRLLPAGPPDESARFPLAPRCPF
Ga0228704_119731	Ga0228704_1197311	F056597	WNVDPSRGDKRLFQRGGERRQIGRLAMASFTGWNRVERYEPEGSRGPEGERRLENRRSVLESDLATGNER
Ga0228704_121037	Ga0228704_1210371	F050386	MXKSYQWKVISEXHKLMVDIQTAHDKLGSQDGNSREHVSRSQMIIKXN
Ga0228704_121566	Ga0228704_1215661	F000212	VTIQKCHPQCAWKCDDPKCPAICEPVCEQPKCHTSCAEPRNAVCDVKCEQPHCTIKCPDKGCAALDCPKCVTVCSQPNCVTHCQAPKPECEAVCEEPRCDWKCHKPQCPVPKCELVCENPNCSPQVNCCACNNAAVGVYNGMMFKEAERNP
Ga0228704_122819	Ga0228704_1228191	F000212	MQKCHPQCAWKCDDPKCPAICEPVCEQPKCHTSCAEPRNAVCDVKCEQPHCTIKCPDKGCAALDCPKCVTVCSQPNCVTHCQAPKPECEAVCEEPRCDWKCHKPQCPVPKCELVCENPNCSPQVNCCACNNAAVGV
Ga0228704_123010	Ga0228704_1230102	F100011	VIYASACDCSLLEGEAEPASTFLSPVARDYPSRAFRRFFMPAALRLF
Ga0228704_123289	Ga0228704_1232891	F005001	RRTIRLSAPRWPFSPAPGSMLPGSPLAAFCPEPVARNGFSLARNDCRLSATSIPGSKLSACYFASFQVCFRARSAFWLHYRLPVCAGCGRFTASGPLHFHYPVRLAAPAISTPLRDSCIPRDQSVQPPLLPAGPPGESARFPLAPRCPSWLKCGLRIIVPGPLRFRRLAV
Ga0228704_123290	Ga0228704_1232901	F033016	MEVAERQQPLRASEKPLRATGSGQEAASGEPGSIDPGAGENGQRGAERRIVRR
Ga0228704_123290	Ga0228704_1232902	F024104	VPVRPFSSTTASRFAPVAAASLPLARCTSTTRFGLPRLRSPLPSGTLTSLGIKAFNRLCRLPVHLTNPPDFLSLPAARPNESLGCGSSFQVRYVSAGLLF
Ga0228704_123467	Ga0228704_1234671	F001233	RWTAVDERKSQVVSRIIPGNWGKAESGWLARPLLNRIARFGGGGRIHQFLWRRSRVVSKREKGTER
Ga0228704_123641	Ga0228704_1236411	F024042	MVDPVTQAHEDGRVPDSSLSAEGKLRRAGTTLWETSFRDEGKHGEPHDRQQGETSLHGRGGESVEVVRNHVDGTRGGLAALSRREARRRVTRAADSPARYDGGAIF
Ga0228704_124026	Ga0228704_1240261	F033016	MEAAERRQLLRASKKPLRATGSGQKSACGEPRSIDLAVGQTGHRGAEWQFV
Ga0228704_124127	Ga0228704_1241271	F000344	MRPKHPHAAESGGGKHTARESERAQSCAAGKERVANA
Ga0228704_124447	Ga0228704_1244471	F019442	CLSAPRHPLWANTGSKLPCALRSFSRLGPDARDGLLLAHNDFRFRGRHSGVKAPDLPLRFPASRLACPFGLSALLPDPVRPDSGRFVASGPLQSHRLARLTAPPVSTPLRDFCLPPDQSVQLDLPPVGPPSEPARSPLAPRNRFLSLVFRLRIIVPGPLRFRRLAVP

Showing 1 to 35 of 35 entries

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300023691: Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 1-17_Aug_MT (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences