Sample 3300023690

Basic Information
IMG/M Taxon OID	3300023690 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128948 \| Gp0290730 \| Ga0247512
Sample Name	Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRI1 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRI1 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	34967668
Sequencing Scaffolds	29
Novel Protein Genes	30
Associated Families	27

Dataset Contents

Total Genome Size

34967668

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Alismatales → Araceae → Pothoideae → Potheae → Anthurium → Anthurium amnicola	1
All Organisms → Viruses → Riboviria → Orthornavirae → Kitrinoviricota → Alsuviricetes → Martellivirales → Togaviridae → Alphavirus → unclassified Alphavirus → Fusarium sacchari alphavirus-like virus 1	1
Not Available	24
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Alismatales → Araceae → Pothoideae → Potheae → Anthurium → Anthurium amnicola

All Organisms → Viruses → Riboviria → Orthornavirae → Kitrinoviricota → Alsuviricetes → Martellivirales → Togaviridae → Alphavirus → unclassified Alphavirus → Fusarium sacchari alphavirus-like virus 1

Not Available

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis

Ecosystem Assignment (GOLD)
Name	Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Ecosystem Assignment (GOLD)

Name

Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Czech Republic: South Bohemian Region
Coordinates	Lat. (^o)	49.043	Long. (^o)	13.6183	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Czech Republic: South Bohemian Region

Coordinates

Lat. (^o)

49.043

Long. (^o)

13.6183

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001380	Metagenome / Metatranscriptome	709	Y
F003269	Metagenome / Metatranscriptome	496	Y
F004452	Metagenome / Metatranscriptome	437	Y
F004473	Metagenome / Metatranscriptome	436	Y
F007847	Metagenome / Metatranscriptome	343	Y
F009688	Metagenome / Metatranscriptome	314	Y
F011845	Metagenome / Metatranscriptome	286	Y
F014264	Metagenome / Metatranscriptome	264	Y
F015690	Metagenome / Metatranscriptome	252	Y
F018868	Metagenome / Metatranscriptome	232	Y
F018933	Metagenome / Metatranscriptome	232	N
F024793	Metagenome / Metatranscriptome	204	Y
F025423	Metagenome / Metatranscriptome	201	Y
F030619	Metagenome / Metatranscriptome	184	Y
F041060	Metagenome / Metatranscriptome	160	Y
F042356	Metagenome / Metatranscriptome	158	Y
F044295	Metagenome / Metatranscriptome	154	Y
F044777	Metagenome / Metatranscriptome	154	Y
F057386	Metagenome / Metatranscriptome	136	Y
F058585	Metagenome / Metatranscriptome	134	N
F060406	Metagenome / Metatranscriptome	133	N
F065397	Metagenome / Metatranscriptome	127	Y
F068527	Metagenome / Metatranscriptome	124	N
F076712	Metagenome / Metatranscriptome	117	N
F079408	Metagenome / Metatranscriptome	115	N
F097372	Metagenome / Metatranscriptome	104	N
F104573	Metagenome / Metatranscriptome	100	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0247512_102083	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22	2199	Open in IMG/M
Ga0247512_106180	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Alismatales → Araceae → Pothoideae → Potheae → Anthurium → Anthurium amnicola	1377	Open in IMG/M
Ga0247512_106968	All Organisms → Viruses → Riboviria → Orthornavirae → Kitrinoviricota → Alsuviricetes → Martellivirales → Togaviridae → Alphavirus → unclassified Alphavirus → Fusarium sacchari alphavirus-like virus 1	1285	Open in IMG/M
Ga0247512_112455	Not Available	857	Open in IMG/M
Ga0247512_112648	Not Available	846	Open in IMG/M
Ga0247512_115218	Not Available	723	Open in IMG/M
Ga0247512_115366	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	716	Open in IMG/M
Ga0247512_115744	Not Available	700	Open in IMG/M
Ga0247512_118665	Not Available	604	Open in IMG/M
Ga0247512_119250	Not Available	588	Open in IMG/M
Ga0247512_119252	Not Available	588	Open in IMG/M
Ga0247512_119344	Not Available	586	Open in IMG/M
Ga0247512_119512	Not Available	582	Open in IMG/M
Ga0247512_119528	Not Available	581	Open in IMG/M
Ga0247512_119657	Not Available	578	Open in IMG/M
Ga0247512_119771	Not Available	576	Open in IMG/M
Ga0247512_119897	Not Available	573	Open in IMG/M
Ga0247512_120172	Not Available	567	Open in IMG/M
Ga0247512_120210	Not Available	566	Open in IMG/M
Ga0247512_120261	Not Available	565	Open in IMG/M
Ga0247512_120329	Not Available	563	Open in IMG/M
Ga0247512_121439	Not Available	539	Open in IMG/M
Ga0247512_121479	Not Available	538	Open in IMG/M
Ga0247512_121681	Not Available	534	Open in IMG/M
Ga0247512_121885	Not Available	531	Open in IMG/M
Ga0247512_122355	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	522	Open in IMG/M
Ga0247512_122357	Not Available	521	Open in IMG/M
Ga0247512_122375	Not Available	521	Open in IMG/M
Ga0247512_122926	Not Available	511	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0247512_102083	Ga0247512_1020831	F030619	MSPLQQIWTACWSGLVLSGWDSMRVAWFLHQWTCRSAPRGVAYQVDCMKKLCHNIRGASLHSKRWKVQPCGIREDVVDCLCRLAVRSPENGFAFTRLSRSLPEPPAREAIRHLQSAALMASAPFPTSAAALTSLRSFVSLSKRARRNPRGPRRLPSSSSSCLEWPATRGGIDGYLEHLGHGLEERGATQAEFSQFAGDSLGAFCLSRARVVLRPCSGVSEDMRESYRCAGLLALRAKGKPFAMKATALRAPGYKVRVVGVPDARTFVEGSWIRESSRLLPPGHWTIDSESREIPNGLHYRRGHTFRSLDLSKATDGLSHAAVEVVIEALVRRGAIRSADHLMARRSLGLVGNTTWSFPDPIGEVVFSRGSPMGTPLSFIVLSWVSAWAVGKFSRSLTHGDDAVGRHRIGSDALDVYASRVASVGAQLNKGKTFRADHSWTACEILALPLENCEDGMTLFVPPSIPPPGLRAPVEADPRLENLWLRRMERVIKSRFPWIKCDPRLHLPVEVGGLGYTGRGLAVGRGLRSRLGALVSRGPSAEIGAALIGKKPFREVGLYPHPLVRISKPKAYWKAVKAVNQELAPLGADLVSVPLESFESFKCQLVESELRLAEGDRFRRKRVAGRPDRDKRSAVFRRLSVKPAKPLSRFGGLASLKRWALTCKNVKVTVDQDIASEIRERIPDPSQPTQGGKGMQ
Ga0247512_106180	Ga0247512_1061801	F015690	SHLEELVGDVRTLTYNATTYHDHPLSHCLTEISEDLVVKKFGSEPFVSVWGNASRHRRFGHVGAKTVTDRTVPHDWFRNRGMEESTTDISAFVKARGHLKYRLFLATHALYYMTLEDVACWLGGNPDAEFHAIVHRHGKSKGHLNKGELKYTVDDNGIVRQVNPLTGFTYGHRSLEPLFHTDSCRLFGGAQGLTWDINKLAGDTYLIKFVLCEAKKANKILDPWTLINKDREVYIRGDVTVYRCLGFEWYVYHSEDGKILLEDVDLYDRLRRTVAGKERTPRAKADLMAMCRRLANKNDIISIHQGFCHDVPPERMTDYVNAAFYADVKHELEVALMYHRENRQAISALNKFIVEGVAPVDFTVIAKVGRAVATPYTMLSGLLKNRSCETSNDLVAGRQAFFTEQLPPDPFDVRKGLVGAHVMAWLDGKELRTGEP
Ga0247512_106968	Ga0247512_1069682	F097372	MSSESIAHTIRNILEQCNSTTISIGHTEGHFLSSKQFAVLEECADTLESLESVAGIGTPSSSAIAQASTEEDGVRSRRLQLAREIKQKQIQLTAASPGNRSQINLDIGKLLSERAKLDKLIKQFDTATIV
Ga0247512_112455	Ga0247512_1124551	F068527	QPAVASPGYPSGEPAAFAAAPSSGCADALLSACAYSPAPRLDRRPTSPARIGVFSPGSTGGKHPAFTVCYALPADWLPTSQLALVSSLQLGLRLLPTHIWRRPSARLARTTSGFRRLLLQLPACAFCRCNLQACARLLPPFAKPVVILRLASAVSPSGFTGFDSPGLRLALHTSGWAFDTPLTSTEPCIAS
Ga0247512_112648	Ga0247512_1126482	F042356	LVATAYQHGAGGSGRIRNKNWNLPKIKTLKSGQKEYTQREGHDGWAGRVKKFQRPAMLKKHR
Ga0247512_114128	Ga0247512_1141281	F007847	LKRAEKPHSKSSDRKALDGPATRPKTPLAVENGVGKPAAPARGAPNAGSGK
Ga0247512_115218	Ga0247512_1152181	F058585	YSRCCVLRLPQWPPSSFRWRCYHWLRWLSELRLASTPCTPARPVANLPARIGFVSFGSTGCKPPTCVECSALPLVLRRSIWLAPDDPGFIGLAPDNPGSTRLAPHGPFLRLGRQPTSDSHRCRPLTRLAASSGLRLMLPLPLGWLRFQFAPAASPSALTGREPLGLRLAAPTPAEPLMHSLFQLNLASAAKPSMSILYPPALASSGIFQLNNFRLASAFALLVRPAIPLRLAPQVSPSVR
Ga0247512_115366	Ga0247512_1153661	F018868	MRSRTSHAAKSGVGEHKARESESAQRCADGKECVAST
Ga0247512_115744	Ga0247512_1157441	F018933	DRCCPPIARRSTLNAPRRSQIAPRSTLCARAGHGLLRVQHLESSPRVQIAPYSTLCAPRRSQIAPRSTLPARYRSRIAPLSAIDAPCRSTDISVRLHFAPCAVHGLLRAQHVKLRTAHRLLCVRRLHFVPITDCSAFLTPCLVLLADCSVLNT
Ga0247512_118665	Ga0247512_1186651	F057386	IIPGDWGKAGSGWLTGLLINRSASFGEAEFTSSPDGVRTPSNANGGLGGEE
Ga0247512_119250	Ga0247512_1192501	F014264	TASLAGSSGSGTMIRRANVIRDYFGRGGERGKIGRLVRVSFSIWKRAEHYNPEGSRGPDG
Ga0247512_119252	Ga0247512_1192521	F025423	VPSDPISSLAHHGHASVLSTAFRNAVRLACLLHGNRFSGHRFNAFRRAAAYLSETGPLARNGLSLARNGSRFHGLHSGVNGPGLPLRYLACRFLRPFGLSAPLPELVCPNSRRFLASDPLHFRRQTHPTALPISTPLREFWLPRDQSVQWASLPSGPPSESARFPLAPRSLFYC
Ga0247512_119344	Ga0247512_1193442	F079408	MPVRPFGSAAGIGLPQSPQLPRFRPVAFPAGELIRLLSPSPLPSGNFCSLGIKAFNGRRRRPVRLPISPDFRLLPATVLFLEEGYGSSFAVRYVFGGLLFLK
Ga0247512_119512	Ga0247512_1195121	F011845	LSPAARRRCLSAHAEHCSKRSLDGSHPAGAGNSKRPFARSQRRFRHHCEVDVPDLYLRFHIRNPRESVRLPAPSLRSVSRPNRGDINARNPFPTLISDAPDLSPISTPLEVFFRKPSGSKRSTGSISGNPPYPTLDCSVRPAASSFDSASDCSGVTQVETRFVRLDYRS
Ga0247512_119528	Ga0247512_1195281	F044777	VPSDPIPSLVLRRHARHRTLHWKALCDPPFCSPEFDFSPKGSMLPGSPQSFFPTEPISRNGLSLARNGCSLSEASIPGSMVPACHFKTSRLDLPPGPPSAPLPSLVCPSRGQLHRLSPLRFPRSGSPGCFLHLHSPPGELPPSGSKRSTDSAALRLTFRIRPISLRSPPPFYC
Ga0247512_119657	Ga0247512_1196571	F003269	VKTRIRIRRRVLAWFVSRWRNHQLKQAEKPHSKFSARKTLDGPATRPKTPLAVENSVGKLAAPKRVRPIASAGKRVWRPP
Ga0247512_119771	Ga0247512_1197711	F041060	MRPIIPLAVENGVGKLAAPVGCAQCQHGKERSANSQ
Ga0247512_119897	Ga0247512_1198971	F001380	PGFTVRFSDPSACRRSLCNRMFRIKSLSLSVAAFQPATGHSNKHVIIGLNIPPEPESRYGLSLAHNDAFATIARSTFLACTFVSISKTLANSFDSQLLRSGRFRGRTRATSTPGTRFPLLPSTLRIYRRSPLPFGSSLKNPSDQSVRSLLNSEARLTRRPIVSYSPPFPLTIPPRISA
Ga0247512_120172	Ga0247512_1201721	F104573	RSHLKLNIGGTPIEHKYNDGKVKRTLKKGLKGLEMVKRERHKIIKIDISLFIQL
Ga0247512_120210	Ga0247512_1202102	F004473	MRRSDDITGAPEIGADNGSKVKNSPGFGFETEPSGGALGRTGSQRITGVEAKAQVGSVDLVMVAKASLRASERPFRVSGSGRMQVLKTRFSH
Ga0247512_120261	Ga0247512_1202611	F004452	VCREASILGQRNRPKGSETARHSGLLNALLCAVHAGGELGWES
Ga0247512_120329	Ga0247512_1203291	F004473	VVKPVERFDPEGWKQPKGEWRSDGIMRAPEIGADNGSKVMNSPGIGFETEPSGGAFGRTGSQRNTGVETKGQGRSVDLVMVAKASLRASERPSRVSGSGRMQVLKPRFPH
Ga0247512_121439	Ga0247512_1214391	F024793	VNSASPELSLWFQRSRINQPDPAFPRSPGIIHKRYNLNLTINR
Ga0247512_121479	Ga0247512_1214791	F044295	PQPLPSNRTGCGERAEIGRIRKADRTAATPIERFDPEGAKIPGGEWRWRERPDEFAGENATGLRRGSGGNWGKPVPAAEPKDRTGKATGDRDSEVAGQDL
Ga0247512_121681	Ga0247512_1216811	F001380	PGFTVRFSDPSACGRSLCNKMLRKNSSSLSAAAFQPATGHSNQRILIGLSTLPEPESRYGLSLAHNDAFATIARSMFLACTFVSTSKTFANPFDSQLFRSVRFRGRTGATSMPGTRFPLLSSTLRILSRSPLPFRPSFENPLDQSVRPVPNPKARLTRRPIVPYSPLLLLAIPLRISA
Ga0247512_121885	Ga0247512_1218851	F009688	GDGSSPSSLSRTGIWRPFGAAGFPTPFSTASGVFGLVAGPSNAFRPWILSEAFQLASAGGCATGLPTRSRHACNSFVRVFTTGSGSATAFGGAFARNHGSRLFTLKLLLFHSPAVSFLISPALGSFSRGLPGRRLLPDTNALFVRLSAFFIWRLQLFIFEPPESPAPC
Ga0247512_122355	Ga0247512_1223551	F065397	MAILKTTANTDMRWMEIAPPRRVCMGRRRPVEKALRPIAEERSLSNGELMDGLCPTFPAVIAFKAEGDNERFASAEY
Ga0247512_122357	Ga0247512_1223571	F060406	GELNSTTGCRVLRLPQRPTSRFRLRSRPLAALAPNLRLASPASHSSSTGGRLRRLGSTFCRSARTVANLRLSPALRASVRPLADLPTFVGVLPQARPRTNFRFAPDFDPSTRLASNFRFAPVVVATSACAFCCCGLWLAPVPPVCQTGGELPTRIGCSSSGFTGFDSLGLRLV
Ga0247512_122375	Ga0247512_1223751	F076712	PNYFSASVGVFENNGQTSFFRWFYDTTLNMDRFDGENTWQGEPYFATRIFNHVQEQETVVYYQEELAVCFQHPINTSIPKPPLNLLNYQAQGIVNFQVVYQWSFTQPNNFSFTYYDRQDNREPVRIDFSDYTRNPPFTVTYVFWEFDATSQDTSLFSISPVILATCNSQSSGE
Ga0247512_122926	Ga0247512_1229261	F018868	MRSTTSHAAKSGVGEHTARESEAPNVCDGKERVASA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300023690: Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRI1 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences