3300023664: Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRA1 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300023664
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128948 | Gp0290745 | Ga0247527
• Sample Name: Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRA1 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 21741839
• Sequencing Scaffolds: 24
• Novel Protein Genes: 24
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	20
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → unclassified Narnaviridae → Botrytis cinerea binarnavirus 5	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Czech Republic: South Bohemian Region
• Coordinates
  • Lat. (^o): 49.043
  • Long. (^o): 13.6183
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007739	Metagenome / Metatranscriptome	345	Y
F009688	Metagenome / Metatranscriptome	314	Y
F010621	Metagenome / Metatranscriptome	301	Y
F016908	Metagenome / Metatranscriptome	243	Y
F018933	Metagenome / Metatranscriptome	232	N
F019067	Metagenome / Metatranscriptome	231	Y
F025750	Metagenome / Metatranscriptome	200	Y
F026569	Metagenome / Metatranscriptome	197	Y
F028056	Metagenome / Metatranscriptome	192	Y
F031504	Metagenome / Metatranscriptome	182	Y
F031875	Metagenome / Metatranscriptome	181	N
F036126	Metagenome / Metatranscriptome	170	Y
F050832	Metagenome / Metatranscriptome	144	Y
F061214	Metagenome / Metatranscriptome	132	Y
F065397	Metagenome / Metatranscriptome	127	Y
F066368	Metagenome / Metatranscriptome	126	Y
F068321	Metagenome / Metatranscriptome	124	N
F068527	Metagenome / Metatranscriptome	124	N
F068861	Metagenome / Metatranscriptome	124	Y
F072836	Metagenome / Metatranscriptome	121	Y
F086425	Metagenome / Metatranscriptome	110	Y
F089697	Metagenome / Metatranscriptome	108	N
F097372	Metagenome / Metatranscriptome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0247527_102431	Not Available	1573
Ga0247527_106901	Not Available	899
Ga0247527_107594	Not Available	840
Ga0247527_108221	Not Available	796
Ga0247527_108371	Not Available	785
Ga0247527_108491	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	776
Ga0247527_108623	Not Available	768
Ga0247527_108673	Not Available	764
Ga0247527_108742	Not Available	760
Ga0247527_111581	Not Available	614
Ga0247527_111851	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → unclassified Narnaviridae → Botrytis cinerea binarnavirus 5	602
Ga0247527_112072	All Organisms → cellular organisms → Eukaryota → Opisthokonta	594
Ga0247527_112462	Not Available	581
Ga0247527_112603	Not Available	576
Ga0247527_112902	Not Available	566
Ga0247527_112950	Not Available	564
Ga0247527_113156	Not Available	557
Ga0247527_113178	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	556
Ga0247527_113262	Not Available	553
Ga0247527_113720	Not Available	539
Ga0247527_113951	Not Available	532
Ga0247527_114081	Not Available	529
Ga0247527_114140	Not Available	527
Ga0247527_115221	Not Available	500

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0247527_102431	Ga0247527_1024312	F068861	LINLSNSLIPQQLFDMPSLTSTRLIAEYGSDQDYKFAGAVQVKTATTLTTTFGAVMRYEPWTNAGAKELLKHHPIGVWKELSVRLAPRPGIYGRMCTFYGGWAAAGVVTPTTAEEMVALHGAIDVTYGGTGDPGTVKVQIPCEFDDTMKDLLKGPDNDNSRPVFFYAFTETDVVDKPANSDRFMLTFKGKYTLHGRY
Ga0247527_106901	Ga0247527_1069011	F018933	TSRVAGLSLCCLRRSRITPRSTLDSLYRPRIAPRSVLIDRCCPPIARRSTLNARRRSQIAPRSTLCARAGHGLLHVQHLESSPRVQIAPYSTLCVPRRSQIAPRSTLPAPYRLRIAPLSAIDAPCRSTDISVRLHFAPCAVHGLLRAQHVKLRTAHRLLCVRRLHFVQITDCSAFLTPCLVLLADCSVLNT
Ga0247527_107594	Ga0247527_1075942	F031504	MPRASVIRRWGLTTRGRDYQLTPTFPRLPGIIPEDPASGPPLARQPLRK
Ga0247527_108221	Ga0247527_1082211	F068527	LDDQVVQPAVASLGYPSGEPAAFAAAPSSGCADALLSACAYSPAPRLDRRPTSPARIGVFSPGSTGGKHPAFTVCYALPADWLPTSQLALVSSLQLGLRLLPTHIWRRPSARLARTTSGFRRLLLQLPACAFCRCNLQACARLLPPFAKPVVILRLASAVSPSGFTGFDSPGLRLALHTSGWAFDTPLTSTEPCIAS
Ga0247527_108371	Ga0247527_1083711	F089697	GVSILITRSTVGAASSGYPSGRPPAFAGAATIGCAGFQNSDLRRRPALQLDRWPTFRLGSASCPSARPAANLRLASNVPLFRSSFGDPSGLRLTILVSPGLRPTILVPSGLRRMALPPARPTTYLRFASMPSFDSAGGFIRLAPYAAPAPRLAPLPVCTGCFTLRLDRP
Ga0247527_108491	Ga0247527_1084911	F010621	LTWLAGRWRNHQPKRAEKPHSKSIGREALDGPATRPKTPLAVENGVGKPAAPEGRPMPVRERELG
Ga0247527_108623	Ga0247527_1086231	F009688	AHPFGAAGFPTPFSTASGVSGLVAGPSNAFRPWILSEAFQLASAGGCATGLPTRSRHACNSFVRVLTTGSGSATAFGGAFARNHGSRLFTLKLLLFHSPAVSFLISPAFGSFSRGLPGRRVLPDAHTLFVRLSAFLILASSTFYF
Ga0247527_108673	Ga0247527_1086731	F068861	MPSVTASRLIAEYGSDQDYKFAGAVQVKTATTLTTTFGSVMRYEPWTNTGARELLKHHPIGVWKELSVRLAPRPGIYGRMCTFYGGWAVAGVVTPTTAEEMVALHGAIDVTYGGTGDPGTVKVQIPCEFDDTMKDLLKGPDNDNSRPVFFYAFTETDVVDKPANSDRFMLTFKGKYTLHGRY
Ga0247527_108742	Ga0247527_1087421	F036126	VNSASPKLALRLMRSRVNQPDPTFPQSPGIIHGTLSFNLTLHCR
Ga0247527_111581	Ga0247527_1115811	F025750	MEKADAHRSINPLPAKTGSGERRAHVTPSPDAEFRPCMPVGERADR
Ga0247527_111851	Ga0247527_1118511	F019067	LDLNEIYQLGRRTASIAIEQGVPLLGRGTKVLGREVGDDRVDLSRTPDSLCTTLVVQEDVIKMVTSPEDTSVRMKSWNFCEVTSGPLTDPSQGFDHVRKNGDFSDLGFNDSVVLRIILDVQKGEGEEHSSTPPGKMSMLGSRLATPRRENRGMWMIASVFQDSMLCTHKATEPKYLPSVMGGTGVTALFDNSNNVFLYTL
Ga0247527_112072	Ga0247527_1120721	F061214	RCRLVNGFAKLTNINLALKETPINDGLTDEGPKVAEYPGR
Ga0247527_112462	Ga0247527_1124621	F086425	MVLACYFVHSLAGFSCSFGFPLRRQLLVCPSYRLHPRFKPVSFLPGLLCRLCRLYPLPIGSFRSLWINASTGFATIRSAFRNCPIFVRSPQPFH
Ga0247527_112603	Ga0247527_1126031	F031875	MRSSNLTPFGDCDSSVLETCPDYLTQLAAVSNRDSLRDPSFAFDGVRTPPEESVNSASPNLRSVQRSRGNQPAPAFPRSPGIILKRPVPILFSTTVS
Ga0247527_112902	Ga0247527_1129021	F028056	PGFTARLSEPPACSAFDPQPNTPDSTFAARRRRFSARAGSVQQTFPQRTCIRPEPETRNGLSLARNDAFATITRSTFLACPFDSTYKLCADPFHRKLSARFGFEAETGRIHHLQPVIHAPLMRSHDATPSPLPFGLFLPSGSKRSTGFITGSSPYRTPDLPFTPRCAFFRLRFGSVLKTPLRPVWLSF
Ga0247527_112950	Ga0247527_1129501	F026569	MHGTEHRVSERRALRLLAPRKPFYPASASKLPDAPQPLCLSKTGPFARNGLSLVRNDLRLRGSHYGVDDPGLLLRSLAYRFSCPFGFLTPPPAAGLPQLPAASTPQTRCTLYRPALPAVPPASAPLQEFSLPRDQSLGWCRNRSVHLPESPDLRSLPVAFPLKDSATDHRSRSATFPEACCS
Ga0247527_113156	Ga0247527_1131561	F072836	VALARDTLPHRGPASLDLHAPACARRVPLAWTGQIEGRSVRVKASRALLDDVARALLVALRAPGSPVRLAMRSGGPRRSSRRPRLLFDASPRRATPSKEPGCLLPHRNPYASGGWLLRARLDRGLVTPPPERHCSETRAPLLPALQRLLLTRKALEPARPTVSRGAEASLERPVAAPVTASTTES
Ga0247527_113178	Ga0247527_1131781	F065397	VQVRVFVSRLFSPDNLTLVMAITKTTVTTDMRWMEIAPPRRVCGGRRRPFEKTLRPIAEERSVSNGELMEGLRPSFPAVSGFKAEGDNERFSSAQC
Ga0247527_113262	Ga0247527_1132621	F016908	EKYSFDLRENGLRPVLSFLDVTNLSENDPLLPHIFEGPWSGIEEFFQGNAFITYKFLKAHALLLEFGRLFVVIDKARNCAKQGGTLLVYGVANAQLNSLLDSTKSMVNAIRDEFASVCKIAECAFEKLVYDNKATPQRSKWIGHFKFVFPASNAINDAVRQLLEDVGLIKLHANSMTLYERFQK
Ga0247527_113720	Ga0247527_1137201	F097372	HFNVGLVPNTRTPSRMVCLLQYSTVGMSNESIAHTIRNILEQCNSTTISIGHTEGHFLSSKQFAVLEECVDTLESLESVAGIDTPSSSAITQASTEEDGVRSRRLQLAREIKQKQIQLITALPGNRSQINLDIGKLLSERAKLDKLIKQFDTATIV
Ga0247527_113951	Ga0247527_1139511	F050832	MVMEAAAADRTSLAKKKKDGPSRAMLRSILLSILHV
Ga0247527_114081	Ga0247527_1140811	F068321	LYRMLTSVSERLHSIHWFRTDSLGNLLPTWARLGPLSVNEQGAALSHRRFDRGSFRCDRAPNGVAWRFPDWTAVGFAFPSPFLGSRSLWMSVTRILVTCWARFDHDRGSLSPRLGEPLAAILTRIASGVFVADDFRVALSLAADSRRARYPLLRTDFAQKVGLRIRSLFLFRRSLS
Ga0247527_114140	Ga0247527_1141401	F066368	CATSLRTRPRHACDFLSRLNHLAPGQPPFLTARSPDATGLASSLRDCFFSQSSDAIFSTASLRKFFHAACQAFVAFPLHAPALFAFQRFSFGELTFYFEFRRATHTVLIRSSNQSLFWQLRFVQTRNLPELLHSTRSGFSSPLAADPSFAFGARERARGTGEFCLRHPAFRLV
Ga0247527_115221	Ga0247527_1152211	F007739	KNKIDAVCFRIIPGDWGKAGSGWLTWLLSNRAARHGSGGRIHQFLWRCSRTVKMRMRDLAARGD