3300023554: Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 71R (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300023554
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0132854 | Gp0266682 | Ga0228692
• Sample Name: Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 71R (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 6975991
• Sequencing Scaffolds: 12
• Novel Protein Genes: 14
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp. KYW1333	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	1
Not Available	5
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium TMED120	1
All Organisms → cellular organisms → Eukaryota → Sar	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Seawater Microbial Communities From Monterey Bay, California, United States
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → coastal sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Alt. (m): N/A
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000055	Metagenome / Metatranscriptome	3096	Y
F000080	Metagenome / Metatranscriptome	2485	Y
F000798	Metagenome / Metatranscriptome	886	Y
F001240	Metagenome / Metatranscriptome	739	Y
F007724	Metagenome / Metatranscriptome	346	Y
F017650	Metagenome / Metatranscriptome	239	N
F020014	Metagenome / Metatranscriptome	226	Y
F033451	Metatranscriptome	177	Y
F041805	Metagenome / Metatranscriptome	159	Y
F044893	Metatranscriptome	153	N
F063740	Metagenome / Metatranscriptome	129	N
F072359	Metagenome / Metatranscriptome	121	Y
F087240	Metagenome / Metatranscriptome	110	N
F102090	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0228692_100162	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp. KYW1333	1612
Ga0228692_100999	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	885
Ga0228692_101086	Not Available	857
Ga0228692_101430	Not Available	775
Ga0228692_102685	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	614
Ga0228692_102842	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium TMED120	600
Ga0228692_103090	All Organisms → cellular organisms → Eukaryota → Sar	578
Ga0228692_103512	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	550
Ga0228692_103766	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	532
Ga0228692_103844	Not Available	528
Ga0228692_103994	Not Available	519
Ga0228692_104031	Not Available	518

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0228692_100162	Ga0228692_1001621	F063740	KIMKKLAFTFVLLLSFACSKDDNSTPNNLVDPIIGSWQSSFALTDENEAGQVVDISANGIIIFNADGTGSRNLLVTNDGGEPQESNETFEWENLSSALNSSETTQNYAINGDAFTAVFTSNFSSLVLSEDGGDLQISMTRN
Ga0228692_100810	Ga0228692_1008101	F000080	MAEWMENVEKSIARIMADKVYTSSEFKRERDTFNSLCKDLERAEVRKWLQQILEILMAERAKEQKTTEFGKLDTLIKKHEELIPNVQKTAVMVDLYWKCYAYGDELKPHVEFLDGIMLSSTRDIAPSCLENVDELIERQEKSLSQLDSKRNIVTDLIAKGKVILQNPDKPKFLEANVKRIQDGWEDTKNKAQERLQLLTETKDAFIGYAEDSETIAGDFDKAEEEIKKVKKIFNLEAANADLSKRQEILKNTDDTINGLFANINKNYNTMAITIPDDKKKILTKEIKAVEEKLEVLGRFKNTVQVIVDLVNSLTAFD
Ga0228692_100999	Ga0228692_1009991	F000798	VKRIQDGWEDTKNKATDRLQLLNETKAAFIGYAENSETIASDFEVAEEEIKKVKKIFNLDAANADLKKRQDILKKTDDGINGLFTSINNNYNTMCITIPEDKKKGLAKEIKAVEEKLEVLGRFKGTVGKIEELVAALTAFDNSLKTLDTWKDAATAELKDIKEASGAMLPEDRVARTMDLQEDIAAKLEILAANAKVELDLLPQGDKVPADAQAFKDELKRITDYVKKLQGDTKVECDKYSNDVKYWAEYRTGIKEFNPWLAGAEKSAAEGLAKPSDLGEVKALDDKVKTFEKNC
Ga0228692_101086	Ga0228692_1010862	F020014	ELTFSNWLNNSYKDEPRPEYAPKKNSVNKPRAASPPTVATIQRGTLPISLILIIVIKK
Ga0228692_101430	Ga0228692_1014301	F102090	MGLVKLTTNKVVQADSILQLTAAISSNTLTIDVLYALDMGSNKLAKANVVYTKGGSNSFTKTEAEYLEEFASAFGLAMGTSGPALVGPIVEQKVTSTGVLVGTITP
Ga0228692_102302	Ga0228692_1023021	F000055	NILAVAALLAATNAIEVQSEKTGDWFVDKTPPPTATGTPSSGYFGADEDDVMNNIFNHYAVPITNAAGEPTGHKVLYKDGCQKACAEILLVTKQVSEAKMESYMAEFFPRTWAKFDLNNSGEVDITESHTFMRSLLGRLNQFVLAPGSLTDIKV
Ga0228692_102685	Ga0228692_1026851	F001240	KFLAIAALLGLTAARQKPEATAPYNAWESVKDGAADGKYERVVTSHFSADSDDIFMRSMIKKYAVEGRTDSQTLDDGTKIGGEPTGKFWMTKSTTLAASKEVLNTHKGLSGGALASYLDTYFDKAWAHFDVNKGGDLEVIKMPQFMRFLASDQWMSLKESG
Ga0228692_102842	Ga0228692_1028421	F087240	FSFGQDAEKNVYEVSYLKVKTGFVREFESAFRNHVKSFYKDENKPYLRKVTHGHRSGEYLLITGPIKMSFMDQKNKRRVDDWNKNILSKAEFKDSNLYRNHPEYSSMSKSESGSGKVVFVRGFKQESGKTTFDILSKLKKISDMSEGCNPYNVVTPIAKSKGEPDFYIVRHLSSMGEFDEDDLFDNKNCNVFEMFQKKM
Ga0228692_103090	Ga0228692_1030901	F033451	EEQQITLDNGFTLAPTDAPGGIAGTGISAVQSGAAPPPPPEANLAYQKKGEESSGVIRLIDLLINDVEKDIQVADLEEKDAQKDYVRFMDNAAKKRAEDSKSQTDKEGALADTEEQLVNDKQGLKNKKMDLMKTEQLIGALHSECDFLLKYYDVRKEARTGEIDAMGKARDVLNGADYGL
Ga0228692_103512	Ga0228692_1035121	F017650	KTMKFFALAFAATVSAVTIRGDFFEARDNGTGPLDKKYERVLPVQFADASDDLFMRSMIMNYAREGKNEDGSPNGVFTMTEAQTRGASAEVLATHKKMSAAETKEYLTTYFPRTWAHFDVNKTGAVGVEVLPQFVRFLASDQQLSL
Ga0228692_103766	Ga0228692_1037661	F041805	LAAIMLVGTSAATALMSQEQRHERALRSIHDAMSLIQVGSQEHTYLHNALVTMTMKTDAEILESHSQIVNVPIDEKRAISFKVSPTYTLDEVNSVTLKSFRKVVGYDTFDSIRQHNRNETKDPSSYYNVTISLMAKRKVDPAALTPAEVPSGAHSLAAKLDKGFPYDD
Ga0228692_103844	Ga0228692_1038442	F007724	MHIYKLVFDTEQQGKQVLIDNNVWEEVTEEGVTFMQYINGTKAVVYIGKVIKTQGTYDPDGHEITPPIYYDGVAYDIMSTDDLD
Ga0228692_103994	Ga0228692_1039941	F044893	DKPSCIMKIALFGLCVLLLVSVPQLEATIAISVGALALTAPQVTGIIALKALALGAFGKGFLISRLLSRRGRRSADERFNIVGEIEADLVSQMASNELEQCTQLLFCAVAAEPQISLDKNVDELRRMVTRIPGKYKKAHQIGKLSASEKCVAAYDCSIKLENLVAVINSI
Ga0228692_104031	Ga0228692_1040311	F072359	QSVNWLIDNLKTKDNYSDLTIEQIRSICTFGDVWYYDLTQKELIWGDWLIKQ