NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300023507

3300023507: Marine microbial mat from Loihi Seamout, Hawaii, USA - Marker 31 Individual Assembly



Overview

Basic Information
IMG/M Taxon OID3300023507 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0118692 | Gp0139191 | Ga0257019
Sample NameMarine microbial mat from Loihi Seamout, Hawaii, USA - Marker 31 Individual Assembly
Sequencing StatusPermanent Draft
Sequencing CenterWestern Washington University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size259766108
Sequencing Scaffolds2
Novel Protein Genes2
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → environmental samples → uncultured beta proteobacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Mats From Loihi Seamount, Hawaii, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Marine → Marine Microbial Mats From Loihi Seamount, Hawaii, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine hydrothermal vent biomemarine hydrothermal ventmicrobial mat material
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Surface (saline)

Location Information
LocationLoihi Seamount, Hawaii, USA
CoordinatesLat. (o)18.902Long. (o)-155.257Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

Associated Scaffolds

Sequences


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