3300023506: Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_182B

Overview

Basic Information

• IMG/M Taxon OID: 3300023506
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133482 | Gp0296392 | Ga0257040
• Sample Name: Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_182B
• Sequencing Status: Permanent Draft
• Sequencing Center: University of California, Irvine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 171065865
• Sequencing Scaffolds: 6
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Child Gut Microbiome
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Gut → Child Gut Microbiome

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Northridge, California
• Coordinates
  • Lat. (^o): 34.2381
  • Long. (^o): -118.5301
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047125	Metagenome / Metatranscriptome	150	N
F055715	Metagenome	138	N
F074964	Metagenome	119	N
F089053	Metagenome	109	Y
F090484	Metagenome	108	N
F097493	Metagenome	104	Y
F098313	Metagenome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0257040_100060	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	141629
Ga0257040_100064	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	138204
Ga0257040_100479	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	51380
Ga0257040_104035	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	8656
Ga0257040_112012	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus	2952
Ga0257040_113791	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2622

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0257040_100060	Ga0257040_100060126	F055715	LTKADEFDKINELLIERTAKKFERASKNRLKKFLTNEKLCDKINELIRVGTAEILDN
Ga0257040_100064	Ga0257040_100064147	F090484	LFFVDSYSSSSVTGFWGLSAKRHKSDGYPQKSIRFFLLQIMKLQLGRNINISLRLLEQWSDDSLFMELYALYCMIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFDELFRMTDSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQADVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASSMAKEAHKDFWDGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNCLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKSYNNTAPDKKSGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIENMDISVQSLPNINITVDNDKELDGESVFKDIPFEELSFYNDTYLYPSSQYSSL
Ga0257040_100064	Ga0257040_10006494	F098313	MKEKEFDFVIYPLKLIITIGLDYKTLCDRFENAEPDHEGEWGNEGDLDSEVSFMNLVRDKRDDRAFKLLWNFQSENDMTTQNICHESFHAAMSVCQHCNMSLGFKVGEDEHAAYIAGFVGNCADEMFGFLEEEKNGKED
Ga0257040_100479	Ga0257040_10047956	F097493	MYKFYSKNGTAQFYERGVKIDGTVYGIQKDSDILRIKRGIVNDKFAETDDNFDMDTEIAKIQHTSITFKQPTSEQLSQIQAKTYNSMTELKQHVQSVMNGDEMSQDEINAMLMLQIAELKAGVDGE
Ga0257040_104035	Ga0257040_1040357	F047125	MDVVLLLMVLGVMSSGFWAADALDHMRREILQQEGKRRGWWS
Ga0257040_112012	Ga0257040_1120121	F074964	MITKKNVNKLQNAVIKENAANLVGAVKLYNALFANGADLKSICKALEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVDDTFVKFALYSKVYKDTNADKEKGVEAKTADWCAENVVYGSEYKSFGFTTAESLETKKSTKWLIKENDEYKATYVAVKIKSYSIRTVAKCVSEYLAHESNQQ
Ga0257040_113791	Ga0257040_1137911	F089053	MEGPRPDKFAFGVRIGRVVGGCRPVKGCIKKWIHESANEQPELSTAEEVNVKNMEAFL