3300023314: Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L029-104C-1

Overview

Basic Information

• IMG/M Taxon OID: 3300023314
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0290974 | Ga0247804
• Sample Name: Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L029-104C-1
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 648945580
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria	1
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → plant litter
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034190	Metagenome / Metatranscriptome	175	Y
F041209	Metagenome / Metatranscriptome	160	Y
F048323	Metagenome / Metatranscriptome	148	Y
F066810	Metagenome / Metatranscriptome	126	Y
F071607	Metagenome / Metatranscriptome	122	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0247804_10036820	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1780
Ga0247804_10105924	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria	973
Ga0247804_10193802	Not Available	691
Ga0247804_10206075	Not Available	668
Ga0247804_10214563	Not Available	653

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0247804_10036820	Ga0247804_100368203	F066810	MATQEYASSIQGVGVRVTRLDANGNLLNGPGDSYTTHAFMRVSFTPEYEEGDEITEKSANGAVCVSFKSPDTLKRITMEFAICEPDPELTALISGGLLLRKNLGTFASPDHKSVGWASPAVGDDPSGNGVAIEAWSRAIVDGKPSATLPYFHWIFPYAKLRQSGDRVIENGLLANTFEGYGLGNILFGNGPDDRWEWPEASNRPYSMGRSTWAPSGLRGFYTW
Ga0247804_10105924	Ga0247804_101059241	F041209	VSAGLCEEIADLRRKLRRVGPNHVLFLDETALRLSEAPTHTLVLPHMQPLVLATETTSYSARFDMIACCAGDRVLVPKIFTPSERKGADVKGINGPMLKQFINDILAQAVEGLDRYPLTLVLDKASIHKNTDALLQEFRDRGSESIKEIVLMPANAAKRVSPLDNALFHDWKEACRIKCPVTHLTIQRVMSDAWNRLDPNHHYRHCGLTGRKDPYFDCPDPAGHRHGL
Ga0247804_10193802	Ga0247804_101938021	F034190	DTPERIVPTPLHLFLGISNRIILDAFSEVLGKERLETALKNVTTVHSVGCSGKSDLYDLNGPEISKWIKKECSKTLLAAAAETQSISAATKATHSVLSRWLQQLHHCLLRSDEWTPADIDAWRSVVSDIHQNWSGETRQNPFPKLHMLHHTVDFVERQRFLGRASEAQIESFHATFNALFHKQHRNQSSNTAERLRRSLADAALRAVQPFLSQ
Ga0247804_10206075	Ga0247804_102060751	F048323	MAFVPILIISRTTYFDSLTGKTESESGKSSEALKITGKPELHKKENSRELKMRVN
Ga0247804_10214563	Ga0247804_102145631	F071607	AVTGNLHDFASLCTEKSVQKLLSTERHENTLARLKSRSSIRSQNLMMACSMPHASDWLLAPPVAGLGLGLQSNVFRTALKFRLGIPLFDLPSVCPALSSSGSICGSEMDVFGDHALCCHNGPSLLFRHNNIRDILGHSARAAGLAAVVIEKKNQIEGSRTKPGDITVQQYHRGFATSAFDVTISHPLQKKFIEIAMEEAGMAAKGAHDRKVIKSLQE