3300023095: Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L193-509B-2

Overview

Basic Information

• IMG/M Taxon OID: 3300023095
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0290906 | Ga0247736
• Sample Name: Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L193-509B-2
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 611536959
• Sequencing Scaffolds: 14
• Novel Protein Genes: 14
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → Haliangium → Haliangium ochraceum	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4
Not Available	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales → Rutstroemiaceae → Rutstroemia → unclassified Rutstroemia → Rutstroemia sp. NJR-2017a WRK4	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → plant litter
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009478	Metagenome / Metatranscriptome	317	Y
F014032	Metagenome / Metatranscriptome	266	Y
F014637	Metagenome	261	Y
F018759	Metagenome	233	Y
F025247	Metagenome / Metatranscriptome	202	Y
F030473	Metagenome / Metatranscriptome	185	Y
F031059	Metagenome	183	Y
F031688	Metagenome / Metatranscriptome	182	Y
F047871	Metagenome / Metatranscriptome	149	Y
F049762	Metagenome	146	Y
F072550	Metagenome / Metatranscriptome	121	Y
F091427	Metagenome / Metatranscriptome	107	Y
F094045	Metagenome	106	Y
F106076	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0247736_10025026	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → Haliangium → Haliangium ochraceum	2048
Ga0247736_10033011	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → Haliangium → Haliangium ochraceum	1781
Ga0247736_10042025	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1575
Ga0247736_10048353	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1464
Ga0247736_10077075	Not Available	1147
Ga0247736_10083115	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1102
Ga0247736_10107745	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	958
Ga0247736_10110751	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	944
Ga0247736_10158915	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	773
Ga0247736_10172216	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	738
Ga0247736_10174596	Not Available	732
Ga0247736_10216838	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	647
Ga0247736_10236025	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales → Rutstroemiaceae → Rutstroemia → unclassified Rutstroemia → Rutstroemia sp. NJR-2017a WRK4	616
Ga0247736_10288134	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	547

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0247736_10025026	Ga0247736_100250263	F031059	MDTEPAPIATRTAVVVTGGTLEQVAAIGVSERIALRANKLGVLVTGRPGDLVIDYAAELPGPVYDVMFNAQSGWFSVTVFRGLSSTTRWDNRPGTDPGYPRVDDILGATTPMAILAVLDITPDAVNFTPPKSLGA
Ga0247736_10033011	Ga0247736_100330113	F030473	DAKEANGVTAYRVKGWPTDLASFETGDATPTPTEKTLLRHGNNFLFGSTAEPVLDGAEGWFSWPVMDGQKICPSKEMVYCWKVSAVETGYSLTFLTGPDEQTFELEPGTGVSRFHYAHHGTTNEVEAKLVSFSPGAGSSARAR
Ga0247736_10042025	Ga0247736_100420252	F009478	VEVFFLMMGLWLVVAMALGMRRPRVLGGAALRARLDALYGEPHELVQVSPAAFPEADLEFYDRVKKELEHRAYRWLGDVEDVTLSRIYPQNRTFARLFTDAGGMIRASAYHLHPRGVVVSMLQLVQLFPRHLRVVELVTEIQGTFLVTSNTHGVDRLEPPPEAKVERLPLQATLTEVLERHTTRITELLRTYPNRQPVTYEKLEDIIASIARA
Ga0247736_10048353	Ga0247736_100483531	F072550	MSEVWPRTGYTLGGGEAQVALIALSTAKLPDPLPVSRKRHGMPTSEGASAVAIVVKDRAEDPAWFADNVVAPFLELITADLGEDAT
Ga0247736_10077075	Ga0247736_100770752	F094045	MKYISIFFTILFIWIAVIFMAFSRSNTNEIFELYLAVMVSTLVLFLIGFGKK
Ga0247736_10083115	Ga0247736_100831152	F014637	FPVLIPFYLALGGRFIGTVRAVHKVNEASVALSNGDSLEGRALAEPIAKSWWVPGRVRALAELRVAIADALEGKGENALTRVRKARSKLSPRLIQHQFSYYTEINLLTALGRTKEARIVLEARGPIPVGEVLKLSYWIAQMHLFVAEGAIPNGQLDDGELHDRMRKGLSMTAGRDLLLLCAWCYATRGEHDEAAFAWKQARDREGSHRLDVAMPRLAAWMTTYLAEHPTLDDPDPDE
Ga0247736_10107745	Ga0247736_101077452	F018759	MPPSSPQAPLATAYEELRPKILQRLLELRATLDASLGRMDDATAHAQINAVLEHLGNYIATGDLGLHRAFLHTFLAMRAAEAQSPAAVLTMLVAIGDTAAQVAQLETVGTPHGPELTLLLTRVTAGTARVVNDLIADELAQRLAQWSELQHRDGGDA
Ga0247736_10110751	Ga0247736_101107511	F091427	PFSSNIKYTGIGAQDILILAVVAAGISTTISFTNLLITRRTLSMPGLRHRRILLPFVTIGILLALRMLALITPVLAAAMLMMFLDRH
Ga0247736_10158915	Ga0247736_101589153	F049762	VRTVLHLVRAAPPAGAVAERDWVVYLQTMELAAHGAPPAPPGPLDHAQLVALLFAADLVITW
Ga0247736_10172216	Ga0247736_101722162	F014032	MGVRKRAQPDNVSTEMVATELRLRTPYRGIETGKPTLRMRVRVPMQPTDVSVTIDVDDLAIEVNWANDGFVLGSGAIDALFVVETQPRAGFLTWFGVFARAKGRPDRIVLETPDCKVARFVERQIEDWLGLDDQPVRGECRID
Ga0247736_10174596	Ga0247736_101745962	F031688	MKNYIVYVNGIEMPMIKAGSHNSAEKKAQKKYPNEFVTVSYTEV
Ga0247736_10216838	Ga0247736_102168382	F025247	MLHDHLDHAEQDVSWLAIRQPAVMRLLERELGAFPGMDDGDAFGAGLALACTVLGGKTPVGDLRLDHRQLEEGLAAVRRGRCDRAMVRSIRDQIDELRVVLTQHESDAVATVIAAIIWSVLDASVAALDDTLVA
Ga0247736_10236025	Ga0247736_102360251	F106076	TNPYNVALLFPCIKEXXAYVTVTPDDNNITVFNRGNSKGLTASIPIGGHCAPNSTVGDNALXKNAQNIPKKNKASDTINKTTPIFNPLXTAKVXLPKYVPSLITSRHQNDIDKITLKKANVNILFAPLTPXNVETALVVKVNREIHVNNGQGEGETRXKGXAX
Ga0247736_10288134	Ga0247736_102881342	F047871	MWGYAEGNATLVGIVVVVITIAAIAYVALRVLRRRG