NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300023043

3300023043: Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-289



Overview

Basic Information
IMG/M Taxon OID3300023043 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0132900 | Gp0272149 | Ga0233346
Sample NameLeaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-289
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size109859957
Sequencing Scaffolds17
Novel Protein Genes17
Associated Families4

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available17

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil And Plant Litter Microbial Communities From Temperate Forests In California, United States
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Leaf Litter → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)forest biome → litter layer → plant litter
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: California
CoordinatesLat. (o)40.2198Long. (o)-122.9842Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011735Metagenome / Metatranscriptome287Y
F015054Metagenome257Y
F065766Metagenome / Metatranscriptome127Y
F091248Metagenome107N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0233346_1000431Not Available2702Open in IMG/M
Ga0233346_1001759Not Available1495Open in IMG/M
Ga0233346_1003122Not Available1199Open in IMG/M
Ga0233346_1003291Not Available1176Open in IMG/M
Ga0233346_1004065Not Available1087Open in IMG/M
Ga0233346_1007289Not Available875Open in IMG/M
Ga0233346_1009724Not Available781Open in IMG/M
Ga0233346_1011103Not Available741Open in IMG/M
Ga0233346_1013816Not Available680Open in IMG/M
Ga0233346_1014662Not Available665Open in IMG/M
Ga0233346_1015178Not Available656Open in IMG/M
Ga0233346_1017105Not Available626Open in IMG/M
Ga0233346_1018397Not Available608Open in IMG/M
Ga0233346_1023496Not Available554Open in IMG/M
Ga0233346_1027706Not Available519Open in IMG/M
Ga0233346_1029425Not Available508Open in IMG/M
Ga0233346_1030481Not Available501Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0233346_1000431Ga0233346_10004311F065766MAEEKRDDGAGDPIKSLLEEALERQRNEMMDSFAQILRRMPA
Ga0233346_1001759Ga0233346_10017591F015054MIGMKVEDHLDGATNFISWKSRVLILKENDLLKLVNEKVPEPDAEEDKSHWRKSDCRARRILVDSVNDHLVPQISQKKTTRKILKP
Ga0233346_1003122Ga0233346_10031221F015054MIAMKVEDHLDAATNFISWKSRVLILGENDLLKLVNEKVPEQDVEEDKSHWRKSDSRARRILVNSVRDHLVHQILQTKTTMKMFKTLNE
Ga0233346_1003291Ga0233346_10032911F015054MKVEDYFDGATNFISWKSRVLILEEIDFLKLVNEKVPKPNAEEDKSHWRKSDARARRILVDSIRDDLVPQISQKKTTREMFKTLKE
Ga0233346_1004065Ga0233346_10040651F015054MIGMKVEKHHDGAINFISSKSRVLILEESDLLKFVNEKVPEPVAEEDKSHWRRSDARARRILVVRDHLVPQISQNKTTRKMFKTLKE
Ga0233346_1007289Ga0233346_10072892F015054MIGMKVEDNRDGATNFIFLKSILLILEENDLLKLVNEKVPEPNVEEDKSHWRKSDARARRILVDLVRDHLVPQISQKKTT
Ga0233346_1009724Ga0233346_10097241F015054MIGTKVEDHLDGATNFMSWKSRVLILEENDLLKLVNEKVQKLDSEEDNYHWRKSDGRARRILVDSVRDRLVPQISQKKMTKNMFRTLKE
Ga0233346_1011103Ga0233346_10111031F015054MIGMKVEDHLDGATNFISWKSRVLILGENDLLNLVNEKVPEQDVEEDKSHWRKSDARARRILVNSVRDHLVPQILQTKTTMKMFKTLKE
Ga0233346_1013816Ga0233346_10138161F015054MIGMKVEDHLDGATNFISWKSRVLILEENDLLKFVNEKVQEQDAEEDKSHWRKSDARARRILVDSDDYHLVSQISQKKMTRQMFKTLTE
Ga0233346_1014662Ga0233346_10146621F091248MEYIYEDTQCVSGVEPEYKWDEIYRLISRREVPDMGLEEEPIYANIEKSAIMKVATRPELFPCSDVMRWILPHTNSNTMLIGNVEGQGYAAFSPGYVALAYHLPEPQIFLSNDWLDNLRMDLVETLKRMLLPGKLYRHRATEDYDTASLRDPYRFVALMLNRIFGRASGRLFKFEWVPIMFHVATQGTVFNWANLVSSSLSSCVAAALGGGEARKKSEFY
Ga0233346_1015178Ga0233346_10151781F015054MIGMKVEDNLDGATNFIFWKSIVLILEENDLLKLANEKVPEPNVEEDKSHWRKSDARARRILVDSVKYHLVPQMSQKKTTMKMFKTLKE
Ga0233346_1017105Ga0233346_10171051F091248MGLEEEPIYANIEKSAIMKIATRPELFPCHEVMRWVLPHTNHGSMLICNVEGQGYAAFSPGYVALAYHLPEPQVFLSNEWLDNLRMDLIETMRRMLLPGKLYRHRATEDYDTASLRAPYRFIALMLNRIFGRANGRLFKFEWVPLIFYVATEGTIFNWSSLVSSSLSSCIAAAKGGVEQKKSEFYMSSILIDCILCRQPFPELKCVWD
Ga0233346_1018397Ga0233346_10183971F015054MIGMNVEDHLDGATKFISWKSRVLLILEENDLLKLVNEKVPEPEAEEDKSHRRRSDARARRIMVDSVRDHLVPQISQKKTSRKMFKILKE
Ga0233346_1023496Ga0233346_10234961F011735NFNPIWHGTYVVKCVLEKGTYELVDYEGTTLAEPRNGLYLKKYYA
Ga0233346_1027706Ga0233346_10277061F091248EEAPIYANIEKSAIMKVATRPELFPCSELMRWVLPHTNHNSMLICNVDGQGYAAFSPGYVALAYHLPEPQLFLTDRWLDDLRMDFVETLKRMLLPGKIFRHRVTEDYDTATLRPTYRFIALMLNRIFGRANGRLFKLEWVPIMFFIATEGTIFNWASIVSSNLSSCVAAASEG
Ga0233346_1029425Ga0233346_10294251F091248AIEVIPQMEYIYEDTQCVTGVEPEYKWGEIYRLISRREVPDTGLEEEPIYANIERSAIMKVATRPELFPCSDVMRWILPHTNNNTMLMGNVEGQGYAAFSPGYVALAYHLPEPQVFLSNDWLDNLRMDLVETLRRMLLPGKLYRHRATEDYDTASLRPPYRFIALMLN
Ga0233346_1030481Ga0233346_10304812F011735GKFNPMWRGPYVVKRVLEKGAYELVDYEGTVLAEPRNGLYLKNTMHDL
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