NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300022691

3300022691: Soil microbial communities from Calhoun CZO, South Carolina, United States - 60cm depth



Overview

Basic Information
IMG/M Taxon OID3300022691 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0131278 | Gp0293140 | Ga0248483
Sample NameSoil microbial communities from Calhoun CZO, South Carolina, United States - 60cm depth
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Colorado
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size44380306
Sequencing Scaffolds125
Novel Protein Genes136
Associated Families118

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria70
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium42
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1
Not Available1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi3
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameCross-Czo Soil Depth Profiles
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Cross-Czo Soil Depth Profiles

Alternative Ecosystem Assignments
Environment Ontology (ENVO)forest biomelandforest soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: South Carolina
CoordinatesLat. (o)34.6074Long. (o)-81.7228Alt. (m)N/ADepth (m).6
Location on Map
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Associated Families

Associated Scaffolds

Sequences


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