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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300022519 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0131983 | Gp0256471 | Ga0224543 |
| Sample Name | Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 1-5 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 43479815 |
| Sequencing Scaffolds | 16 |
| Novel Protein Genes | 18 |
| Associated Families | 18 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4 | 1 |
| Not Available | 9 |
| All Organisms → cellular organisms → Bacteria | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 2 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Peatland Microbial Communities From Stordalen Mire, Sweden |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → peatland → peat soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Sweden: Norrbotten County, Stordalen Mire | |||||||
| Coordinates | Lat. (o) | 68.3533 | Long. (o) | 19.0471 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000335 | Metagenome / Metatranscriptome | 1276 | Y |
| F009108 | Metagenome / Metatranscriptome | 323 | Y |
| F014092 | Metagenome / Metatranscriptome | 266 | Y |
| F020177 | Metagenome / Metatranscriptome | 225 | Y |
| F023078 | Metagenome / Metatranscriptome | 211 | Y |
| F026747 | Metagenome / Metatranscriptome | 197 | Y |
| F028976 | Metagenome / Metatranscriptome | 190 | Y |
| F029963 | Metagenome | 186 | Y |
| F046484 | Metagenome / Metatranscriptome | 151 | Y |
| F054454 | Metagenome | 140 | Y |
| F069503 | Metagenome | 124 | Y |
| F079498 | Metagenome / Metatranscriptome | 115 | N |
| F085023 | Metagenome | 111 | Y |
| F094733 | Metagenome | 105 | Y |
| F096720 | Metagenome / Metatranscriptome | 104 | Y |
| F100040 | Metagenome | 103 | N |
| F102317 | Metagenome | 101 | N |
| F105696 | Metagenome | 100 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0224543_1000568 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4 | 1248 | Open in IMG/M |
| Ga0224543_1001294 | Not Available | 968 | Open in IMG/M |
| Ga0224543_1001352 | All Organisms → cellular organisms → Bacteria | 956 | Open in IMG/M |
| Ga0224543_1001479 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 931 | Open in IMG/M |
| Ga0224543_1003034 | Not Available | 753 | Open in IMG/M |
| Ga0224543_1003086 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 750 | Open in IMG/M |
| Ga0224543_1004878 | Not Available | 656 | Open in IMG/M |
| Ga0224543_1005393 | Not Available | 636 | Open in IMG/M |
| Ga0224543_1006969 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium | 592 | Open in IMG/M |
| Ga0224543_1007370 | Not Available | 582 | Open in IMG/M |
| Ga0224543_1008241 | Not Available | 563 | Open in IMG/M |
| Ga0224543_1008481 | Not Available | 558 | Open in IMG/M |
| Ga0224543_1008545 | All Organisms → cellular organisms → Bacteria | 557 | Open in IMG/M |
| Ga0224543_1008717 | Not Available | 554 | Open in IMG/M |
| Ga0224543_1009530 | Not Available | 539 | Open in IMG/M |
| Ga0224543_1011314 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 510 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0224543_1000568 | Ga0224543_10005682 | F026747 | RNLVKKKSTLGGRATLQAVTRVKLEQASKAAMWTPTRRKNGEGRDDWEEPGAGARYRITVRTSRSTGVVSTACKEGNLRQWGRLGMVGESRAPNVIFGMTDHLGVGEGQRYRRDRVTPVEGRALASGVLEKEERSGDWR |
| Ga0224543_1001294 | Ga0224543_10012942 | F102317 | MTTTNDIYQTKLRRPVNVGTRFSNEEFALISDAASCANLPLSDWFRRTVLDALADQKGDPPQIILHEEIQFIKLILMNILPKMASGKPVTEEKMMELMLRFKDEKVNLAKQIIQTSQSRG |
| Ga0224543_1001352 | Ga0224543_10013522 | F105696 | MGGGMLGAGMCPIMMAGLGTKMDIKRIDKGVSITFTSTDPLTVARLQKMAEAMRLMHEAMMQ |
| Ga0224543_1001479 | Ga0224543_10014791 | F046484 | MGETPAAAHDNPSRLGRFIQNYSGFLSSFVIGVAGLVATSIWQFRQAQNAERQQASEQAIARTKADNDWRIARAEILGKNLSVLSQQGPQTADQRFGVLLSLSRGNILDPELAVSYALELGRDNPTYMRVVLAGTA |
| Ga0224543_1003034 | Ga0224543_10030342 | F096720 | VRGTRLLAATTGAAVLVAAVLVGCAVGMRRNLTKSPPSEVIFDDQCHLQDYFDDLARGRDRPPALVRSDEIQTSASEKTLGGRSAYLFGENSSLPTLRRLLVENWKLLSAAVMASSQVEVEVRWCDKVGTRWVVNDENVELRAAGKTVALAPHPCLTAFLFGQALFERRRELVGLPPVSAPQATTHDAGTADLITSD |
| Ga0224543_1003086 | Ga0224543_10030861 | F023078 | MVEAPVKAETLLIAAVSLAALETAGFIPAMGTAITLAAVTVRAEIKHRATGRKVTHALAKNRGTSNRHRFRERALDNRRRSWQDDSR |
| Ga0224543_1004878 | Ga0224543_10048782 | F029963 | MARTERQLQAAYDKGKISLKEFHEALSKIGTARHARDIAKKKNRASMSSTKWF |
| Ga0224543_1005393 | Ga0224543_10053932 | F069503 | MDPTPLTLELRPLHKGAYTQITLKGPVATVPQALEVRRLMSLLWLWHGGSVDVVLYVDGTNSGACWLEVWEDVLGRVPGHRLDMRYLIIAHDTLAAGAGHER |
| Ga0224543_1006969 | Ga0224543_10069691 | F020177 | VKLLQLQYVQWKFMDALKGKLILKYKYNMDNIEVIDLNNTYWDRLKGFATELRIDARWILRNNDTKKPYGSLRIASHPDLPPGYLRAIFTYVTKIKPKNKEEKMKTVEDFQMKITELEVYSISDEIKTEQKKYEAPYKELEGMFGVKIFE |
| Ga0224543_1007370 | Ga0224543_10073701 | F014092 | KKPVVFKPNNFLFMKKVLLVLVLVMAVLAVNAQATKPTVTKEKPVRAAVLVADLQKTITDNIAKDYVGYTIKEATSVTANGIVTYEVVVVKDTMTETLVYDNNGVFVKKLPPPTPKKK |
| Ga0224543_1008241 | Ga0224543_10082412 | F054454 | MEKNESLAAPPSKQKRRSRGEWLKEIRSLRDSGLSAKEYATKKGFVFSTLKYWMRVLRNDVEARTKSAVPAFLPVSVLHAATVPSSDAAVMVEVDLANGRRLRMHVRPDTDFKRVSDLVNAVEGEHPC |
| Ga0224543_1008342 | Ga0224543_10083421 | F100040 | MHIYQKYFLVVLWKILFSQATECICENAMTKKETRPDLKKIISLGRNGIIDPDYLERWGQFKEDWTEADLATWNKLKEKMTVSNSGELEFCPPPSSSEKVWAKKFILRAEERGLC |
| Ga0224543_1008481 | Ga0224543_10084811 | F079498 | DAASWQSYVMTSHKEDALSARNQGILGFNFDIFRQFMRFTPGYQSNYIMVNDPVMAKFNNDAIAAQSVGIVQQLLHDANLYVAQNHFAISLAQPSTFNMVQPWVGGAVGNNTLGDAVTGGGFGDGVPIAVWINQSLKSSLGH |
| Ga0224543_1008545 | Ga0224543_10085452 | F094733 | MTPPNAIKRHEKRARDTARFAEAFFALTGFRPVAAYREFLPPEFLARSIPSPAELVERFGDRLHTRTSNALRQQDPGPAHRGDWTYGSLLELRGFGVFCLLDVMQVLRDSGVVLDPVRVAGRASGPGP |
| Ga0224543_1008717 | Ga0224543_10087172 | F028976 | IACDCLFWKTRELPMLTVKGDPVDTTRGLIIYEGKSLVEFVFNSSKCHYSVCSMHSLHRIERTDYSLIVVTQNAIVPCAEITIFGKYQFNYHLSMEGHKEVEELDKFLGKLKEQMLK |
| Ga0224543_1009530 | Ga0224543_10095301 | F000335 | MPGNIAIAAPSGVMPATLSTAFTELREYAQLQNQYHDGTVQRTQLAQTSRRTFRLSKRLCAADLGTLYAFWIAKQGGLIPFAFYNPFEVAAGHDIGSNYDPTGNGTQGRVTVVFRGPWAQATDIARTNVQSLELVEV |
| Ga0224543_1009530 | Ga0224543_10095302 | F085023 | NINGQPITPEFVTDQSMAAQGASYGRTQQAANMQVPGLMVA |
| Ga0224543_1011314 | Ga0224543_10113142 | F009108 | ILSDYRVETTFQALGARSTKVEISHYYSTTTLKAKLFNLIAKGKIARETQATLNAAKVTIEAACRAG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |