Sample 3300022055

Basic Information
IMG/M Taxon OID	3300022055 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0127565 \| Gp0198086 \| Ga0224898
Sample Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 28 SPOT_SRF_2011-11-29 (v2)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300022055 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0127565 | Gp0198086 | Ga0224898

Sample Name

Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 28 SPOT_SRF_2011-11-29 (v2)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	5741700
Sequencing Scaffolds	34
Novel Protein Genes	43
Associated Families	43

Dataset Contents

Total Genome Size

5741700

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	2
All Organisms → cellular organisms → Bacteria	2
All Organisms → Viruses	1
Not Available	20
All Organisms → Viruses → unclassified viruses → Virus sp.	2
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured phage MedDCM-OCT-S08-C495	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Roseobacter phage CRP-1	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

All Organisms → Viruses → unclassified viruses → Circular genetic element sp.

All Organisms → cellular organisms → Bacteria

All Organisms → Viruses

Not Available

All Organisms → Viruses → unclassified viruses → Virus sp.

All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured phage MedDCM-OCT-S08-C495

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Roseobacter phage CRP-1

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium

Ecosystem Assignment (GOLD)
Name	Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Ecosystem Assignment (GOLD)

Name

Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → ocean strait → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → ocean strait → sea water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)	N/A	Depth (m)	5
Location on Map

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Location Information

Location

USA: California

Coordinates

Lat. (^o)

33.55

Long. (^o)

-118.4

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001611	Metagenome / Metatranscriptome	663	N
F002192	Metagenome / Metatranscriptome	585	Y
F002374	Metagenome / Metatranscriptome	566	Y
F002445	Metagenome	558	Y
F002811	Metagenome / Metatranscriptome	528	Y
F003364	Metagenome / Metatranscriptome	491	Y
F004055	Metagenome / Metatranscriptome	455	Y
F004428	Metagenome / Metatranscriptome	438	Y
F006971	Metagenome / Metatranscriptome	361	Y
F007750	Metagenome	345	Y
F011585	Metagenome	289	Y
F011622	Metagenome / Metatranscriptome	289	Y
F014114	Metagenome	265	Y
F021434	Metagenome / Metatranscriptome	219	Y
F022313	Metagenome	215	Y
F022393	Metagenome / Metatranscriptome	214	Y
F023484	Metagenome	210	N
F024560	Metagenome / Metatranscriptome	205	Y
F034139	Metagenome	175	Y
F035759	Metagenome	171	Y
F038722	Metagenome	165	N
F039647	Metagenome / Metatranscriptome	163	Y
F046986	Metagenome	150	Y
F049098	Metagenome	147	N
F050019	Metagenome / Metatranscriptome	146	N
F050754	Metagenome	145	N
F056669	Metagenome	137	Y
F058918	Metagenome / Metatranscriptome	134	Y
F059451	Metagenome	134	N
F062823	Metagenome	130	Y
F064203	Metagenome	129	N
F066838	Metagenome / Metatranscriptome	126	Y
F069469	Metagenome / Metatranscriptome	124	N
F070011	Metagenome	123	N
F072335	Metagenome / Metatranscriptome	121	Y
F073420	Metagenome / Metatranscriptome	120	Y
F082557	Metagenome / Metatranscriptome	113	N
F087747	Metagenome	110	N
F093526	Metagenome	106	Y
F096072	Metagenome	105	N
F098218	Metagenome	104	N
F100954	Metagenome / Metatranscriptome	102	N
F104027	Metagenome / Metatranscriptome	101	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0224898_100010	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2334	Open in IMG/M
Ga0224898_100011	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	2303	Open in IMG/M
Ga0224898_100014	All Organisms → cellular organisms → Bacteria	2112	Open in IMG/M
Ga0224898_100016	All Organisms → Viruses	2089	Open in IMG/M
Ga0224898_100034	Not Available	1613	Open in IMG/M
Ga0224898_100054	Not Available	1378	Open in IMG/M
Ga0224898_100055	Not Available	1353	Open in IMG/M
Ga0224898_100073	Not Available	1177	Open in IMG/M
Ga0224898_100097	Not Available	1091	Open in IMG/M
Ga0224898_100104	All Organisms → Viruses → unclassified viruses → Virus sp.	1072	Open in IMG/M
Ga0224898_100117	Not Available	1006	Open in IMG/M
Ga0224898_100131	All Organisms → cellular organisms → Bacteria	978	Open in IMG/M
Ga0224898_100199	Not Available	858	Open in IMG/M
Ga0224898_100271	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	779	Open in IMG/M
Ga0224898_100314	Not Available	733	Open in IMG/M
Ga0224898_100331	Not Available	721	Open in IMG/M
Ga0224898_100348	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured phage MedDCM-OCT-S08-C495	713	Open in IMG/M
Ga0224898_100377	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Roseobacter phage CRP-1	690	Open in IMG/M
Ga0224898_100412	Not Available	675	Open in IMG/M
Ga0224898_100513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	637	Open in IMG/M
Ga0224898_100527	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	631	Open in IMG/M
Ga0224898_100576	Not Available	615	Open in IMG/M
Ga0224898_100654	Not Available	591	Open in IMG/M
Ga0224898_100750	All Organisms → Viruses → unclassified viruses → Virus sp.	569	Open in IMG/M
Ga0224898_100830	Not Available	554	Open in IMG/M
Ga0224898_100839	Not Available	552	Open in IMG/M
Ga0224898_100863	Not Available	548	Open in IMG/M
Ga0224898_100954	Not Available	534	Open in IMG/M
Ga0224898_100986	Not Available	529	Open in IMG/M
Ga0224898_101053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	521	Open in IMG/M
Ga0224898_101086	Not Available	517	Open in IMG/M
Ga0224898_101111	Not Available	514	Open in IMG/M
Ga0224898_101129	Not Available	512	Open in IMG/M
Ga0224898_101181	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	506	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0224898_100010	Ga0224898_1000104	F023484	MDTHQHPSPQLPTFDAPMNINTEAGELLIATLGRYTSKTEKIIFFKTRAGSLVSSYYVSTFNSIKEGDGLMLSNSCDPDQAIDADQVAKCKTFIRNHS
Ga0224898_100010	Ga0224898_1000105	F022313	MTYHYQPQQEYELDKLERILKELQSVIEREKKRHMMDKHLTHSMRNLLEHEIIPLLEAEVYYDPTPQY
Ga0224898_100010	Ga0224898_1000107	F098218	MTSFSSWSKRPEEMRAAAKARAIAALHEKHSKGLTTLERAYLHALRTGRLDLDD
Ga0224898_100011	Ga0224898_1000111	F066838	LGQEYFINSTQLEDKIRDLLPSQGGAGAGFDLSASTQIIPVIDVTESAQGSNLRVDLQTSYGFNSEVREVVNGTDILLTTTGYFRLFGHYRALSTSNTA
Ga0224898_100011	Ga0224898_1000112	F001611	MPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRVASAVDTAGTSATADTFLNVSVNNAEYSKDVSVPALVTGQPFGVLNGSYTNNDLLTTGSQRNRVLVRFTNDTSATRTIRCGVFIG
Ga0224898_100011	Ga0224898_1000113	F007750	MAFLGDFGKFFGLGSSEEVLGDVGEFVAGKPGRFVGEAAARATDSLAGDGGISPASTADQALEQSAVSVSKRGDVPQELSTMTGTRGMTSQAGFGALAPLFGTASRFLGSKSGQIVTGVGTAVGLGSAQFMGSDSRMKPVLTQSRRNKSKVRQLVNFMGIEGTANFLSQSMNVNVTPNDVVALLLRTFRNDGAYITKAQVRNLRRTTNRFKSLEKQVKEATSMSRTTRRAPVRRASTTTLIKN
Ga0224898_100011	Ga0224898_1000114	F002374	MISNTNMNQVLLYVGLILASVSFFLCVYACLGVGKLLNSVKGLEWDTVATLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLTYAIKQQNGAMHPPKQDLGG
Ga0224898_100014	Ga0224898_1000143	F073420	MKALSIELDSARAEKLSTLSDATAGNMTNVSIGGEFIEFEQNKLSASKLAKALLNSAIDRAFSQLPK
Ga0224898_100016	Ga0224898_1000162	F011585	MNLQEKLQQLAQERQNLQVAMIEITGAMKILEQQILETEPEAVQPSDTEASTQVEEAAQS
Ga0224898_100034	Ga0224898_1000344	F100954	MDFHNTSLNHYENQPVFWADELPPEPPSYLCEARRRSIFDRLLNRPGELIWDEWVQTVDHWQKLEKEALRDGLTLTTDPTPST
Ga0224898_100054	Ga0224898_1000543	F069469	MKVKILVGSDFPINKKEGRAEAGEVLELPDKVAKALIKNNAAIKFDSKMMKEEEE
Ga0224898_100055	Ga0224898_1000553	F038722	MNITDSRDEAFEAIAEMLRSNVKKTKIASKLAADYCVSDKTVYKWISKVEEMYDIEPIESIIQQHKSELKSEIYQDLIRDYHKAKDEKDDELRRKIGAILNNTYLKKINFN
Ga0224898_100055	Ga0224898_1000555	F034139	MKLEQIYKTLKDFAEKEEELISRYPCDSDYDVPTWDKIYDALDILDSIINYEPSDAELEAYFNDYQDPPHVVNQRMLEMKSESHGRRFV
Ga0224898_100073	Ga0224898_1000732	F014114	MKNYKATDPEMIQAQEDLAKLSNLSDRVISNDKDLLDELMTIQGKLCEISAIKANFMQRYEDILEEQYQIETRLAVFQHEMLHSFELVFRYYKTKKKGFK
Ga0224898_100073	Ga0224898_1000733	F056669	MSLIKSYILSIQEMGYDAYKLNKLTSVEWDDLLTKSLKSDKKLYETLILTRCKLKLEKDRAI
Ga0224898_100097	Ga0224898_1000972	F062823	MIELLNLIFIESPIGLSIIFIVAIVAMGIEGYRSS
Ga0224898_100104	Ga0224898_1001041	F021434	SSTGLSTIQAPMAGSRITTSNAGFGSSFGSFLSDVGSNIVGPLSGLFSQVRPFISQQSVGQPALPTRTNLGGQESQSSGVTEGFVGGIPNILGQAARFLRTPAGQVGTGLVGGIGASMLSGGNGGMRITRKMKSQYRAVLNLAQGDYDQAASMIGVSTDFFIMVLLKRFRNDGPVVTKAALRKTKTTVRRLKSMCDMYDSLRPTATRRKAPMRRASTTLISNK
Ga0224898_100117	Ga0224898_1001172	F093526	MNLIVIEMFPGPIISEGVDEFVFERILDPVLPTLPFGIPTPLPVRFGLYAIELQYDAGVTIAAGEVAGKSQYTGQDRAEENAARLGFNLIYQPGGMKI
Ga0224898_100131	Ga0224898_1001312	F064203	MSAQAKKVFYNRVRRTCLKHNIDIVYDGMPKAVYGVELVKDGQVMFADRTNDNMPLDINWKRLHEEMADYGYKGGVK
Ga0224898_100199	Ga0224898_1001991	F096072	MFMIYQRPMSTAQVDAVNRHPESSFAEAYMGLLFPSEDNAQERVTEALKLGLYQKTMLIGATDGGSVTLEQVFDAGNGHIGKGVNVVSMGSHPSMSVGDIAVSLLDDDVY
Ga0224898_100271	Ga0224898_1002713	F004428	LTMIGEIAAIVAGVNAATSAIKQIAETTDDISSISSFLSTLGGAEVELQRAQNEGKLSEADAVKAALAKKQIQDTMREVRDLFTVSGNGDLYKEAMASMAEARKAKQAELARRAAEKKKFWKEVKEFAAIVVVLIFLLPMTLALLLGWLTR
Ga0224898_100314	Ga0224898_1003143	F058918	KSRRYQEKMAEKRREEIMEYVGYSIGFIIIVFFAGLAAWFVAKWTGRL
Ga0224898_100331	Ga0224898_1003312	F082557	MLKKQRLKTWRYVTTDEQVQWLLAPDLEHALHAAVELSGGSSKLKDVYLDDDDW
Ga0224898_100348	Ga0224898_1003482	F006971	MIYQGIEYKKHQKVKFVIPTDERIIDPKTKSIRWRYGTIEFFPKNLKAAWILEKGAKENIRISLFCVLPLN
Ga0224898_100377	Ga0224898_1003771	F022393	MMDDLHNNINVWHGTTKISICQHWDTPSDRLNGDAAMQEVGIIPDDGDWGNMHIEKYSASLDHLIDVLEGIRHEIEAKKYNESSGKGDARATQTATGSA
Ga0224898_100412	Ga0224898_1004121	F046986	RRAMELLKEEQQGTREELLNQLQALRLATVQRALKRGHYQTVATLLGDMGRVIGEAAPEQLALQVPTLDITIENKGQE
Ga0224898_100428	Ga0224898_1004281	F104027	SRQTRSSNSSSSRKTNLLITMNKESLPTELQDVLTEDSVESIEVALKEKVELSVEAALASQDELYAEKLETLIAQIDKDHTTKMQSIVEAVDKNNASKLGNVIKKYEAELNDGASQFKETLVESISNYLEEYIDEAVPTAAIEEATRNNTAMTVLNNLRSTLAVDSSLMSESVKTAIVEGKTEMDELKAEIAELKKTNETLNENYNQAKSAAFLENRCAKFS
Ga0224898_100513	Ga0224898_1005131	F002811	ITGGTSPQEQAYQNDWQIYNASDWSVTSTGGSDFQLAEYAGGWLRQGDNAPAAGEVQGIAGPGVWQYNQNQKWWFETSIAITDVTELNAWVGFAGSGYADSDTLPTDGIGFSHLQDTTSIQFISRKNGAGVSFDMLDSAGGSTFAMLDSTLPTQTATTQLKPTNSVRLGFVYQPAGSEVGVTANQFKLYLNGNPVGVQAATTVPDDVQLGLN
Ga0224898_100527	Ga0224898_1005271	F024560	LNLFGIGGQPQRTNAGTAISVDVGRPQETAQSGEILGANLGLAPALFQGARSFLRTPGGQTALGFGGAALGAAFAGDGSAAPRITRKMKSDVRRIYMMAGMDPDATASILNNLGTYPRINFNASLVFFILTKRFRNDGPVVTKAAVRKTKTTLRRMKGVVDMYNSVCKPTTRRTPARRAAPKAVQLIKN
Ga0224898_100576	Ga0224898_1005762	F011622	LIPLLLELDFRTYEAMVKVTFGEEGNQNYDDALRALPGVTTVTVASQDTDSSLATYKVKIISQKEPTEAFQAFKDNATSKYSNIVNVEVGEQTIEEK
Ga0224898_100598	Ga0224898_1005981	F050754	ILTAHAISGGSYESIFSVERPLFLHAGDILKVTAATADKIVVIVACEEFYEPHR
Ga0224898_100654	Ga0224898_1006542	F059451	MSMLITYIKRAEEAPSLSNEQIRNEANAYNNLRSTLMAWDSLAKDSRNKNDWNNFAKYVLKEVQEMATKIKEVEK
Ga0224898_100750	Ga0224898_1007501	F002192	MHQVLLYSTFFIAICALFFGLYAGGRVAKIERASKDLEWDAIANITGDLATLKKTIQTLNNRINGMHSPKVAEQELMMQLLQNQQQAKPNGKIIGG
Ga0224898_100830	Ga0224898_1008301	F004055	MEMELKQKIPPLHKTTNPKHREDYVFVEKPGEDFTALKLISGPFSSIVYKYGAVGFRPESEKRPDGSLPMQFDYDIIENKIEADIDSQEFINHIGDILVV
Ga0224898_100839	Ga0224898_1008392	F072335	MKMNGGLQARWQDEWILLKRKWNNLKLMHPNLKIEWEDYYNENRK
Ga0224898_100863	Ga0224898_1008632	F049098	MSRPNKISEETKSYNLTVSKADYNELEKFATRETDRYATQTSVADLIRNAIKLYLEDLR
Ga0224898_100954	Ga0224898_1009542	F035759	VITEEHSHSNGLMLDMKELTKCHYDVLIRNKELIEENDKLRKEIADLHNT
Ga0224898_100986	Ga0224898_1009862	F050019	LGIRDNIRGFFAQEVQTEKKSGQYPTSQVVFPFNTDAGYFSGVNQMSPEGNSAALACLNVLGTAFSEPPLKVYLKNQEGMEYI
Ga0224898_101053	Ga0224898_1010532	F039647	NMTAKLKTRIKSMTFQKNVNRRIEVEKNEETKYYEEMYKKRTTELLGIKHENIYGIARGS
Ga0224898_101086	Ga0224898_1010862	F002445	MSTGKRICKDCKGNGYLRTEMNTIVQCLTCWSEGEIDESIWARNYDPIIPDELQSTQKDD
Ga0224898_101111	Ga0224898_1011111	F070011	MNIFALSRCPMQSAWWLDDIRKNKMILESAQMLST
Ga0224898_101129	Ga0224898_1011292	F003364	MWIAFMLLCTGPSALTCEVMAKTEATFSTEEACVQEAMVVARYFQQQGYLAIPECKKIKMGVSL
Ga0224898_101181	Ga0224898_1011811	F087747	MGIKNIQGSTKDFDKPLTSEAIYSFENFLESHGFETKEPLETNPTKPQRAYTNVNNKRALSGYYAFYDNYGTPVGFASDYRTGQTHNFKLSGRKSTKTNTEALERFR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300022055: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 28 SPOT_SRF_2011-11-29 (v2)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences