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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300021907 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0111469 | Gp0242137 | Ga0214480 |
| Sample Name | Marine eukaryotic communities from Monterey Bay, California, United States - M1_20Mar14CPVII9sort6BwellE17 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 51995206 |
| Sequencing Scaffolds | 32 |
| Novel Protein Genes | 39 |
| Associated Families | 10 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana | 6 |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta | 6 |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira | 2 |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica | 2 |
| Not Available | 10 |
| All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED88 | 3 |
| All Organisms → Viruses → Predicted Viral | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Unclassified → Unclassified → Seawater → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → bay → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: California | |||||||
| Coordinates | Lat. (o) | 36.746 | Long. (o) | -122.0257 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000866 | Metagenome / Metatranscriptome | 855 | Y |
| F010163 | Metagenome / Metatranscriptome | 307 | Y |
| F019658 | Metagenome / Metatranscriptome | 228 | Y |
| F026012 | Metagenome / Metatranscriptome | 199 | Y |
| F041807 | Metagenome / Metatranscriptome | 159 | N |
| F051162 | Metagenome / Metatranscriptome | 144 | Y |
| F057890 | Metagenome / Metatranscriptome | 135 | N |
| F064770 | Metagenome / Metatranscriptome | 128 | Y |
| F094948 | Metagenome / Metatranscriptome | 105 | Y |
| F100378 | Metagenome / Metatranscriptome | 102 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0214480_100041 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana | 45124 | Open in IMG/M |
| Ga0214480_100112 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta | 34523 | Open in IMG/M |
| Ga0214480_100155 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta | 32007 | Open in IMG/M |
| Ga0214480_100532 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira | 19064 | Open in IMG/M |
| Ga0214480_100708 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica | 16329 | Open in IMG/M |
| Ga0214480_100971 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana | 13529 | Open in IMG/M |
| Ga0214480_101183 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta | 11738 | Open in IMG/M |
| Ga0214480_101276 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana | 11078 | Open in IMG/M |
| Ga0214480_101292 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana | 10971 | Open in IMG/M |
| Ga0214480_101507 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta | 9402 | Open in IMG/M |
| Ga0214480_102061 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana | 6621 | Open in IMG/M |
| Ga0214480_102452 | Not Available | 5357 | Open in IMG/M |
| Ga0214480_102760 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana | 4592 | Open in IMG/M |
| Ga0214480_103033 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira | 4032 | Open in IMG/M |
| Ga0214480_103383 | Not Available | 3450 | Open in IMG/M |
| Ga0214480_103639 | All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED88 | 3062 | Open in IMG/M |
| Ga0214480_103822 | All Organisms → Viruses → Predicted Viral | 2842 | Open in IMG/M |
| Ga0214480_103976 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta | 2661 | Open in IMG/M |
| Ga0214480_104140 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica | 2510 | Open in IMG/M |
| Ga0214480_104289 | All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED88 | 2368 | Open in IMG/M |
| Ga0214480_106615 | All Organisms → Viruses → Predicted Viral | 1131 | Open in IMG/M |
| Ga0214480_106841 | Not Available | 1068 | Open in IMG/M |
| Ga0214480_107482 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta | 917 | Open in IMG/M |
| Ga0214480_107724 | All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED88 | 873 | Open in IMG/M |
| Ga0214480_107874 | Not Available | 843 | Open in IMG/M |
| Ga0214480_108309 | Not Available | 767 | Open in IMG/M |
| Ga0214480_109014 | Not Available | 671 | Open in IMG/M |
| Ga0214480_109038 | Not Available | 668 | Open in IMG/M |
| Ga0214480_109450 | Not Available | 623 | Open in IMG/M |
| Ga0214480_109662 | Not Available | 601 | Open in IMG/M |
| Ga0214480_110093 | Not Available | 561 | Open in IMG/M |
| Ga0214480_110706 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria | 513 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0214480_100041 | Ga0214480_10004130 | F000866 | MGYVISLLFHIPFIADWHKIGEYRQIQTDNNTKRENKSCIDFDYVVGGELLLRKEGILRKSESRYTGPWTITQVHTNGNIRIQCGNKSERLHIRRVIPYY |
| Ga0214480_100112 | Ga0214480_10011235 | F094948 | TAAWVLDCHYNIGHVLSSPQTTTRGVGVAKCWADLEILAQSEARCRPTHGCKSATDTSTKVLQVFINLLGTQAMPIHQYIC |
| Ga0214480_100155 | Ga0214480_10015516 | F019658 | MKINRIKSQNYKLFKYNLLKLQIYSNESIFDLSNFSNSTLEQIEAYLKQVLKIIFEYHVXQFKILFIGFPVVCKMKQMKLINFTNHNFISEKSXVSGVFRNRFSILTYLKLIQLQSFSKSLKLLLTIKTKPHLVVVFNQKVELNTINEFYKSGIPILSFNXNSFDTLKVAYHTLGNFNFIEKNIKLTFFFLLYSLLKKTPLKKRRNQNF |
| Ga0214480_100155 | Ga0214480_10015533 | F064770 | MDFNLKTYKRSRIKHYFKRINFFFFFHGTSLNNESXIKTEQVFVNYGLKYFRVLNKLMINTLKNSIFKNLVVLIHGPIILLSNPNTKLTFKESKSLNPLISLLSFRLNNKIYSKKQIKNLNRMSYLENISIFHNSMKTCIKLPYYKFKNKRTPVVSK |
| Ga0214480_100155 | Ga0214480_10015536 | F010163 | MLLLKIANKSSFSQNLINHNYIKYLFHNIKVLKFIKKDAFSYYTQXLFLFISTNLYNLKIKTSCLMSYISFFNSQKLISYVININLSSTNTLINVNSIKGNPKFFYSAGMFSLQKNQKTRQPKAIITILRALLAKSKIFKVKPVAVHFNNVFFNHQSYIFKKLKQKIFMKLVTSYNFRSHNGCRLKKKKRIKIRTRTRKL |
| Ga0214480_100532 | Ga0214480_10053214 | F100378 | MSDAYFSVDIPKSLPIHGMALTSTGRKIEHSKVVVDSTQTYKLNGSVSLKNLGFLVFEV |
| Ga0214480_100708 | Ga0214480_10070811 | F094948 | MTAAWVLDCHYNIVHVLSSPQTIATGVGVAKCWADFEILAQSEARYQPTHGCKSATSTSTKVLQVFTDLLGTQAMPIHQYIC |
| Ga0214480_100708 | Ga0214480_10070812 | F094948 | MTAAWVLDCHYNIGHVLSSPQTTTRGVGVAKCWADLEILAQSEVRCRPTHGCKSATDTSTKVLQVFINLFGTQAMPIHQYIC |
| Ga0214480_100971 | Ga0214480_1009713 | F057890 | MVLSSEGLHLLSNVAAWRHDFETINDKNVALWHRYYTDVINYYIMKETHREWIDNKNKEKKMKKEYSTSDGWEVFRFQISEEHRINRTFNTLNDFLDYWFHEYHNRQESSNRIEPCYMKKDTKKQSGQGPTGVQQEAVERYQKLCYTDKAIYRAIGKEYFRKKVVYDNN |
| Ga0214480_101183 | Ga0214480_1011832 | F057890 | MVLSSEGLHLLSNVAVWRHDFETINDKNVAMWHRYYTDVINFYIMKETHREWIENKNKEKMMKKEYSTSDGWEVFRFQVSEEHRINRTFDNLNDFLDYWFHEYHNRQESRNRIEPCYMKNHTKEQPGQGPTGVQQEALERYQNLSYTDKAIYRAIGKEYFRKKVDYSHMSNVNN |
| Ga0214480_101276 | Ga0214480_1012765 | F057890 | MVLSSEGLHLLSNVAVWRHDFETINDKNVAMWHRYYIDVINYYIMKENDCQLIISNNDKKEYSTPDGWEVFRFQVSEEHRINQTFNTLNDFLEYWFHEYNNRQESSRLEPVYMKKQTKNQSGECPTGVQQEASERYQKLSYTDKAIYRAIGKEYFRKKK |
| Ga0214480_101292 | Ga0214480_1012928 | F057890 | MVLSSEGLHLLSNVAVWRHNFETINDKNVAMWHHHYTDVINFYIMKENHREWIDNNNKKKKEKKEYSTSDGWDVIRFQVSEERRINRTFNTLNDFLDYWFHEYHNRQESSRLEPIYMKKHTKKQSGHPTGVQQEALERYQKLSYTDKAIYRAIGKEYFRKKSDLLTSDIVDTTQSNRLT |
| Ga0214480_101507 | Ga0214480_10150710 | F094948 | MTAVWVLDCHYNIVHVLSSPQTITTGVGVAKCWADLEILAQSEVRCWPTHGCKSATSTSTKVLQVFINLLGTQAMPIHQYICQPTSLGGARQPNIAQMLVRF |
| Ga0214480_102061 | Ga0214480_1020617 | F100378 | MSDAYAIVHIPKSLPTHGMALTSTGRKIEHNKVVVDTQMYESNGSVSLEKSGFSPLRGVAVLL |
| Ga0214480_102452 | Ga0214480_1024524 | F057890 | MVLSSEGLHLLSSVAVWHHDFETINDKNVALWHHYYTDVINFYIMKENHREWIDNNNKKKKEKKEYSTSDGWDVIRFQVSEEHRINRTFDTLNDFLDYWFHEYNNRQESSRLEPMYMKKQTKKQSEQGQTGVQHEASDRYQKLSYTEKAIYRAIGKEYFRKKK |
| Ga0214480_102760 | Ga0214480_1027605 | F100378 | NSTMSDAYAIVDIPKSLPIHGMALTSTGRKIEHNKVVVGTQTSESLSWISLEKSGFSRLRGVAVLL |
| Ga0214480_103033 | Ga0214480_1030334 | F094948 | MTAAWVLDCHYNIVHVLSSPQTITTGVGVAKCWDYLEILAQSEARCRPTHGCKSATSTSTKARQVFINLFGTQAMPIHQYIC |
| Ga0214480_103383 | Ga0214480_1033831 | F100378 | MSDAYAPTHIPKSLPTHGMALTSTGRKIEHNKVVVDTQMYESNGSVSLVKSGFSPLRGVAVLL |
| Ga0214480_103383 | Ga0214480_1033832 | F100378 | MSDAYAIVHIPTSLPIHGMALTSTGRKIEHNKVVVDTQMYESNGSVSLEKSGFSPLRGVAVLL |
| Ga0214480_103383 | Ga0214480_1033833 | F100378 | MSDAYAIVHIPKSLPTHGMALTSTGRKIEHNKVVVDTQMYESNGSVSLEKSGISPLRGVAVLL |
| Ga0214480_103639 | Ga0214480_1036392 | F057890 | MVLSSEGLHLLSNVAVWRHDFETINDKNVALWHRYYTDVINYYIMKETHREWIDNKNKEKKMKKEYSTSDGWEVFRFQVSEEHRINRTFNTLNDFLDYWFHEYNNRQESSNRIEPCYMKNHTKKQSGQGPTGVQQEALERYQKLSYTDKAIYRAIGKEYFRKKVVYSHMSNVNN |
| Ga0214480_103822 | Ga0214480_1038223 | F057890 | MVLSSEGLHLLSNVAVWRHDFETINDKNVALWHRYYTDAINFYIMKETHREWIDNKNKEKKMKKEYSTSDGWEVFRFQISEEHRINRTFNNLNDFLDYWFHEYHNRQESSNRIEPCYMKKDTKKQSGQGPTGV |
| Ga0214480_103976 | Ga0214480_1039761 | F051162 | MKKSIPLSALQSKLCNIWGTKPETTKIILQRVEDWTADSFNEDVYIDIRAYGKEERTRDFVLDGMKDVQKAFGEHDLVANVRLETYDGERYFHVPPPK |
| Ga0214480_104140 | Ga0214480_1041402 | F057890 | MVLLSEGLHLLSNVAVWRHDFETISDKNVALWHRYYTDVISFHIMKENHHREWIINNNNKKNKKKEYSDSDGWDVFRFQVSEEHRINRTFNTLNDFLKYWFHEYNNRQESSRLEPMYMKKQTKNQSGECPTGVQQEASERYQKLSYTDKAIYRAVAKEYFRKKK |
| Ga0214480_104289 | Ga0214480_1042891 | F057890 | MVLSSEGLHLLSNIAVWRHDFETINDKNVAMWHHYYTDVINFYIMKENHREWMDNNNKKKEKKKEYSTSDGWDVIRFQVSEEHRINRKFNTLNDFLDYWFHEYHNRQESSRLEPIYMKKHTKKQSGQGPTGVQQEALERYQKLSYTDKAIYRAIAKEYFRKRK |
| Ga0214480_106615 | Ga0214480_1066151 | F100378 | AIVHIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYELNGSVSFKKWGVFSRLRGVAVLL |
| Ga0214480_106841 | Ga0214480_1068411 | F057890 | MVLSSEGLHLLSNVAIWRHDFETINDKNVAMWHRYYTDVINYYIMKENDCQLIISNNNNKKEYSTSDGWDVFRFQVSEEHRINQTFNTLNDFLEYWFHEYHNRQESSRLEPVYMKKQTKNQSGECPTGVQQEASERYQKLSYTDKAIYRAIGKEYFRKKKSG |
| Ga0214480_107482 | Ga0214480_1074821 | F051162 | TKSIPLSSLQSKLCDIWGTKPETTKIILQRVEDWTSDSFHEDVYIDIRAYGKEERTRDFVLDGMKDVQKAFGEFDLLANVRLETYEGERYFHVPPPKK |
| Ga0214480_107724 | Ga0214480_1077242 | F057890 | MVLSSEGLHLLSNVAVWRHDFETINDKNVALWHRYYIDVINFYIMKENHREWIDNNNKKKEKKKEYSTSDGWDVIRFQVSEEHRINRPFNTLNDFLDYWFHEYHNRQESSRLEPMYMKKNRQRNNPEFNKKPWKDIKNLATLITQYIEQLQRSTSGRRSSICTIIKVTIKVTSNQLGFRTYL |
| Ga0214480_107758 | Ga0214480_1077581 | F026012 | LLQALYSIVISLQNNLSINFFDMWIYEIYINKVSIHNKFMNQKFQNLEPSEYITIKLAYGNNVSQEKK |
| Ga0214480_107874 | Ga0214480_1078741 | F100378 | MSDAYATVHIPKSLTIHGMALTSTGRKIEHSKVVVGAQTYESNGSVSLKNWIFSRL |
| Ga0214480_108309 | Ga0214480_1083091 | F100378 | KSLPIHGMALTSTGRKIEHSKVVVVTQTFESINSISLEKSGLSHL |
| Ga0214480_109014 | Ga0214480_1090141 | F100378 | STMSDAYATVGIPKSLPIHGMALTSTGRKIEHNKVVVHTQTYESISSISLEIWDSVGFEV |
| Ga0214480_109038 | Ga0214480_1090381 | F100378 | MSDAYAIVHIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYELNGSVSLEKSGFSRFRGVADLL |
| Ga0214480_109038 | Ga0214480_1090382 | F100378 | IPKSLPIHGMALTSTGRKIEHNKVVVDTQTYESNGSVSLEKSGFSRLRGVADLL |
| Ga0214480_109450 | Ga0214480_1094502 | F094948 | MTAAWVLDCHYNIVHVLSSPQTITTGVGVAKCWADLEILAQSEARCRPTHGCKSATSTSTKARQVFINLLGTQAMPIHQYIC |
| Ga0214480_109662 | Ga0214480_1096621 | F094948 | MTAAWVLDCHYNIAHVLSSPQTITTGVGVAICWADLEILAQSEARCRPTHGCKSATSTSTKVQQVFINLLGTQAMPIHQYIC |
| Ga0214480_110093 | Ga0214480_1100931 | F100378 | MSDAYAIVDIPKSLPIHGMALTSTGRKIKHSKVVVGTQTYESLSSISLENVGFLVVEV |
| Ga0214480_110706 | Ga0214480_1107061 | F041807 | KHNVKEKLNMARLELTLNFPKNFEIKTFNVKSEKKLSPLAKLILQSVRFKHFYYV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |