3300021542: Marine sponge Cinachyra sp. microbiome, Papua New Guinea CO2seep, Upa-Upasina 'control', cg17ic 200bp no Eukaryotes last

Overview

Basic Information

• IMG/M Taxon OID: 3300021542
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117787 | Gp0124809 | Ga0224700
• Sample Name: Marine sponge Cinachyra sp. microbiome, Papua New Guinea CO2seep, Upa-Upasina 'control', cg17ic 200bp no Eukaryotes last
• Sequencing Status: Finished
• Sequencing Center: University of New South Wales
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 67351695
• Sequencing Scaffolds: 11
• Novel Protein Genes: 12
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
Not Available	8
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus → Prochlorococcus marinus str. MIT 9201	1
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps
• Type: Host-Associated
• Taxonomy: Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Cinachyra Sp. (Marine Sponge) → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Upa-Upasina 'control' site, Papua New Guinea
• Coordinates
  • Lat. (^o): -9.828217
  • Long. (^o): 150.820517
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004842	Metagenome / Metatranscriptome	421	Y
F005351	Metagenome / Metatranscriptome	403	Y
F017577	Metagenome / Metatranscriptome	240	Y
F050391	Metagenome / Metatranscriptome	145	N
F065466	Metagenome	127	Y
F065740	Metagenome / Metatranscriptome	127	N
F079320	Metagenome / Metatranscriptome	116	Y
F087327	Metagenome / Metatranscriptome	110	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0224700_103242	All Organisms → cellular organisms → Bacteria	1614
Ga0224700_141155	Not Available	664
Ga0224700_149950	Not Available	521
Ga0224700_152218	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus → Prochlorococcus marinus str. MIT 9201	509
Ga0224700_155407	Not Available	941
Ga0224700_165532	Not Available	883
Ga0224700_170274	Not Available	680
Ga0224700_171197	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	655
Ga0224700_173078	Not Available	44959
Ga0224700_178856	Not Available	610
Ga0224700_187110	Not Available	600

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0224700_103242	Ga0224700_1032424	F050391	MKLKDPIVLTDELKTEKFRNEKLHKKCNKLLKQSKEQQEEISDLNEYIDSLESQIADYKRRFVPDFDMLSKGGAEVPISDLKIMSEKAKRSMAKRFERKYGEEWVKVNILENKNLK
Ga0224700_141155	Ga0224700_1411551	F065466	LVEVHSQTVPYVSFMGTNLTNHSYVDLTLVGDAAGSSVQCHTDMDTCCGPAQGPDRGDWYFPNGDRLQFSNGPDDIYEQRTAQQVDLRRRNNGDTSGIYRCTIETNAVNDDDGRETVYAGLYASGGEFKHCVHMYI
Ga0224700_149950	Ga0224700_1499503	F005351	MYHINNPSNWSWSRAFDEVNRTIRKAELEQQIMNHLDNYSGDPKWTNFTEDQKDDHYTILTELL
Ga0224700_152218	Ga0224700_1522181	F004842	KAIKEINFLGVLILSEEINSLTLSKAPLLNNAEETANKPIRVIKDGLPNPAKAFSGERTPVAINIPTHNNPVNSGAIVFLINKIIDITKTTTVINASKLLLTTAIKFIRDLFNSIYPKTIFQKSLIRIIFFLKTF
Ga0224700_155407	Ga0224700_1554071	F087327	LPSPSSINFHGPDIFGNEFFTKKVEAFSSHKIFGDLKSLLFSAQTESF
Ga0224700_165532	Ga0224700_1655321	F065466	TVMSVLLCLLSALVEVNSQTAPYVSFMGANLTNHSYVNLTLVGDARDGRDSVQCHTDLVTCCNSTQGADRGDWYFSNRSRLNFNNDSIDILLYQVRRAQQVDLRRKNISDVSGMYRCVIETNAVHNDSGRETVYVGLYASGGECTHMCI
Ga0224700_170274	Ga0224700_1702741	F065466	LVEVHSQTVPYVSFMGTNLPNHSYVNFTLVRDAMDGSDSVQCHTDLVTCCNRTHGDDRGDWYFPNKERLNFWEDPGDIYEQRRAQRVDLRRRNNGDTSGIYRCTIETNAVHSDNFSDTTTRETVYAGLYASGGECAYGEEFEYSQ
Ga0224700_171197	Ga0224700_1711973	F079320	SWTQFYQEVGNKEQIRKCQTQIAALKKAYNETKTKK
Ga0224700_173078	Ga0224700_17307825	F017577	MFPTSSLVSQSGVTTRRQWGSRPSRATLELEFSNITDANASALLSAYHSAEGSFDSLTLPDIVFNGTDATLKTWLSGSATGAGLVWSFTEGSPPTVNSVARGIHEVSISLTAELR
Ga0224700_173078	Ga0224700_17307828	F065740	MFKFVNYIHLLTTTYRYQNYSVNQTRTYSGNDYSFLPFGVSTGAGTKGGDRSSTRLVVGLNQISVNIFAEAVQSQWQLDLKTVSLDVTDDSDDALIRSEVWRIASYSIDTTRLILTLSSPLDAAASDVPRRLLTTELVGALPTNG
Ga0224700_178856	Ga0224700_1788561	F065466	LSALVEVNSQTVPYVSFMGANLINHSYMDLTLVGDAWNGSDSVQCHTDLLTCCSKAQGAHRGDWYLPNGSRLNFNVHPGDIYENRETQQVDLRRRNNGDTSGIYRCTVETNAVHSDNASGTTTRETVYAGLYASGGKRTHMCV
Ga0224700_187110	Ga0224700_1871101	F065466	LVEVHSQTVPYVSFMGTNLTNHSYVDLTLVGDALDGSDSVQCHTDLNTCCSMDQGDDRGDWYFPDGTRLGFSGTSEGAYERRQLQRVDLRRIESSTSGMYRCDMDTSRVHSHNNSDNTTRETVYVGLYARGGGCDIVCVEYH