Sample 3300021514

Basic Information
IMG/M Taxon OID	3300021514 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0129088 \| Gp0215218 \| Ga0190293
Sample Name	Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4869-30-0-1_MG
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300021514 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0129088 | Gp0215218 | Ga0190293

Sample Name

Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4869-30-0-1_MG

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	378970519
Sequencing Scaffolds	53
Novel Protein Genes	54
Associated Families	32

Dataset Contents

Total Genome Size

378970519

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	8
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	9
All Organisms → cellular organisms → Bacteria	6
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	5
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aminicenantes → unclassified Aminicenantes → Candidatus Aminicenantes bacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium 4572_32.1	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → unclassified Holophagae → Holophagae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Wenzhouxiangellaceae → Wenzhouxiangella → unclassified Wenzhouxiangella → Wenzhouxiangella sp. W260	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2
Not Available	8
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Archaea → Euryarchaeota

All Organisms → cellular organisms → Bacteria → Proteobacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aminicenantes → unclassified Aminicenantes → Candidatus Aminicenantes bacterium

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium 4572_32.1

All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → unclassified Holophagae → Holophagae bacterium

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Wenzhouxiangellaceae → Wenzhouxiangella → unclassified Wenzhouxiangella → Wenzhouxiangella sp. W260

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium

Not Available

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium

All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon

Ecosystem Assignment (GOLD)
Name	Microbial Communities From Sediments And Microbial Mats In Various Locations
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Ecosystem Assignment (GOLD)

Name

Microbial Communities From Sediments And Microbial Mats In Various Locations

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine hydrothermal vent biome → ocean trench → microbial mat material
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine hydrothermal vent biome → ocean trench → microbial mat material

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	Mexico: Guaymas Basin
Coordinates	Lat. (^o)	27.0074	Long. (^o)	-110.591	Alt. (m)	N/A	Depth (m)	2001
Location on Map

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Location Information

Location

Mexico: Guaymas Basin

Coordinates

Lat. (^o)

27.0074

Long. (^o)

-110.591

Alt. (m)

N/A

Depth (m)

2001

Location on Map

Zoom:

Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F012874	Metagenome / Metatranscriptome	276	Y
F014681	Metagenome / Metatranscriptome	261	Y
F015411	Metagenome	255	Y
F021303	Metagenome / Metatranscriptome	219	Y
F026568	Metagenome / Metatranscriptome	197	Y
F030933	Metagenome / Metatranscriptome	184	Y
F031503	Metagenome / Metatranscriptome	182	Y
F033045	Metagenome / Metatranscriptome	178	Y
F036294	Metagenome / Metatranscriptome	170	Y
F038247	Metagenome / Metatranscriptome	166	Y

Scaffold	Taxonomy	Length	IMG/M Link
Ga0190293_1000064	All Organisms → cellular organisms → Archaea → Euryarchaeota	37503	Open in IMG/M
Ga0190293_1000218	All Organisms → cellular organisms → Bacteria → Proteobacteria	20320	Open in IMG/M
Ga0190293_1000420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	15101	Open in IMG/M
Ga0190293_1000484	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	14246	Open in IMG/M
Ga0190293_1000646	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	12400	Open in IMG/M
Ga0190293_1000695	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	11924	Open in IMG/M
Ga0190293_1001766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	7505	Open in IMG/M
Ga0190293_1002124	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	6869	Open in IMG/M
Ga0190293_1002361	All Organisms → cellular organisms → Bacteria → Proteobacteria	6521	Open in IMG/M
Ga0190293_1002564	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	6249	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0190293_1000064

All Organisms → cellular organisms → Archaea → Euryarchaeota

37503

Open in IMG/M

Ga0190293_1000218

All Organisms → cellular organisms → Bacteria → Proteobacteria

20320

Open in IMG/M

Ga0190293_1000420

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria

15101

Open in IMG/M

Ga0190293_1000484

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

14246

Open in IMG/M

Ga0190293_1000646

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

12400

Open in IMG/M

Ga0190293_1000695

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria

11924

Open in IMG/M

Ga0190293_1001766

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria

7505

Open in IMG/M

Ga0190293_1002124

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

6869

Open in IMG/M

Ga0190293_1002361

All Organisms → cellular organisms → Bacteria → Proteobacteria

6521

Open in IMG/M

Ga0190293_1002564

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

6249

Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0190293_1000064	Ga0190293_100006465	F015411	MSRSGYGRKDGSGRGWKEGGRGRNRTNRCRHPTIKKRRR
Ga0190293_1000218	Ga0190293_10002185	F093886	MKYWILILAPAFLLITTPDIQAHSPVSVNGNAQDHQHVYRRQQYGKPLQQGRLVQAPGGGGMILWRPGTRSDYGKLNARRNGPMINDQKPRQSATPKASNKYGSPVISYGKPKRIN
Ga0190293_1000420	Ga0190293_10004205	F030933	MNNDPQANELKRKRAQAVRTAWVLGFIAVAIFVTFIGSAIFGR
Ga0190293_1000484	Ga0190293_10004845	F059981	MERERIICIFCGRIAKIKEQDGLKIVVCPKCKRETEMDTYQDIFDQWLGDIRNKDVER
Ga0190293_1000646	Ga0190293_100064612	F073571	HPQMVFFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTKKSSFLDGH
Ga0190293_1000695	Ga0190293_100069510	F093886	MKFWVLILAPTFLLITAPDIQAHNLITVSDNAQNHQHVYRRQEYGKPLQQGHLVQGSAGGGVILWGVGARSDYGKLNARRNGPIIDNQKPRQSTMPNSRKKYGSPVLSYGKPVQNK
Ga0190293_1001766	Ga0190293_10017665	F030933	MNDDSQANELKRKRARAVRTAWVLGFIAVAIFVTFIGSAIFGR
Ga0190293_1002124	Ga0190293_10021247	F059981	MQRENIICIFCGRIAKIKEQDDLKIVVCPKCKRETELDTYQDIFNQWLGDVRKEDL
Ga0190293_1002361	Ga0190293_10023612	F074895	MAKKRKDKPWHLKVTWTLSIVMLLLIFGFFYQSFQEVRNIAPVQVAMERMSGSTTQTDPDETDPD
Ga0190293_1002564	Ga0190293_10025641	F073571	MVFFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTQKSSFLDGY
Ga0190293_1002922	Ga0190293_10029222	F073571	MVFFRDIGVGHHDLTPQNSTLFLRVKSVVRLDLTQKSSFLDRHYLA
Ga0190293_1003004	Ga0190293_10030042	F012874	MPAKAGIQKRLKILDSRLRGNDTNGRFQTFYEGIIVNRNK
Ga0190293_1003546	Ga0190293_10035463	F073571	MVFFRDIGVGHHDLIPQNSTLLLRIKSVVRLDLTQKSSFLDGH
Ga0190293_1005593	Ga0190293_10055932	F048322	MSNSLMLWYLKKTQEYWWYVEAFCKYPERKGLVQIAGENRSI
Ga0190293_1005790	Ga0190293_10057902	F059981	MERENIICIFCGRIAKIKEQDDLKIVVCPKCKRETELGTYQDIFDQWLGDVRNKDGET
Ga0190293_1007732	Ga0190293_10077322	F094909	VLSRLLVFGDFVGTVKRSDLIFDLDTTSEYFRKYEGQRIQSLTLPVKNRNLSTLLGEIEACFQQGWILMDNGEWTEAEFDRVYELSHQISAEIMVLREQFNQEIPEPYYPVADPSHLK
Ga0190293_1009694	Ga0190293_10096942	F059981	MDHDTIKCFFCGGKANIKEQGDLKVVSCPKCKRETELDTYQDMFDQWIGDIRKEGNSMGSRHEVSDVYEK
Ga0190293_1011492	Ga0190293_10114923	F065254	LNAPVALNKCSEQAEKGPVESETILWGCPGKHIKATLPFNKMKQAFAAFKKRPYGPALPRFIGYN
Ga0190293_1011574	Ga0190293_10115743	F048322	MFWCLQKMQEYWWYVEAFCKRPGRKELVQIASENRSS
Ga0190293_1012561	Ga0190293_10125614	F021303	HSSEFVELVFREAPTEYQRLMVSERFRRELEQDSAFNHGKLFVYAEFVVFRREFRERFPGSSPAACTNAFCRLLLKNDISITNLVDFVEGPDDRGQLLLKKRGQSPFLGSSS
Ga0190293_1018160	Ga0190293_10181603	F076639	LIAVYDMKNSEIKKGQDRAPILWMHEAITYLGLDRLGLTRPDKAMYRLIKKGALHPKKIAGHFAFDKSELDTVVANGDQKR
Ga0190293_1019116	Ga0190293_10191162	F102576	MNDLLMLDKYFPEGNLEGGIDLANRLGWGISVQMAGDGYVVSSGDEPILRAEHKDALQSFIYGLGLAYAILPEKVFISLEKALKDL
Ga0190293_1019919	Ga0190293_10199193	F048322	MRCANPLMLWCLQKTQEYWWYVEAFCKRLERKELVQIAGENRSI
Ga0190293_1019972	Ga0190293_10199723	F074895	MAKKRKDKPWHLKVTWTLSIVMLLLIFGFFYQSFQEVRKMTPVQVAVERMAGPAEPGNIDATDPD
Ga0190293_1023418	Ga0190293_10234181	F073571	MVFFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTQKSSF
Ga0190293_1023851	Ga0190293_10238512	F038247	MKSVFFWSEEKARTHRKDNPEPRGIYLTLRQGAIVTKPIQSVLFGFAP
Ga0190293_1029528	Ga0190293_10295281	F040632	MSHRTHEAASHEIEIEDLRDPAAIPDMVHVVVASREEELLWAVFDGFSELPTVRVTGCSTLPQTRQICAADPPGYLIIDMTLLDHEPMDLITLANLSKWQTHIVALTDHPVFEIGARFGKARLTFLQKPVSAHDLLLLLRLRIGDHDEQQAEVC
Ga0190293_1035110	Ga0190293_10351105	F092080	MQDKRVTIRIPFEIWKALRELQTMGKISSIQQAAVTGMNKLIESLKRGEEDNQRGAAKKRVLNVLVKEKPLGNWEDIHRERTEADADRS
Ga0190293_1037926	Ga0190293_10379262	F074895	MAKKRKDKPWHLKVTWTLSIVMLLLIFGFFYQSFQEVRKMTPVQVAVERMVGPAEQENTDATDLD
Ga0190293_1038918	Ga0190293_10389183	F093886	MKYWILILAPTFLLTTAPDIRADNLATFKTQDQQHVYRRQQYGKPLQQGQLFKAPGGGSMILWRPGTRSDYGKLNGARSGPIIGDQKPKPGVKPKRSKKYGTPVYGYGKQ
Ga0190293_1039764	Ga0190293_10397642	F048322	MFWCLQKTQEYWWCVEDFCKYPERKELVQIAGENCSI
Ga0190293_1042172	Ga0190293_10421722	F084255	MESSKRYLLQAEIEYWHEMLFLNKSRMSKSKEEEMRACLKTAVRAMNTNSIGDFRIAA
Ga0190293_1049217	Ga0190293_10492172	F059103	MSNTDQRELVLRLGPLDAATAAWILDLCGHLQQAIWIKYGDEIEAHWAATDPEQPIHGRLSPTPSRKR
Ga0190293_1053858	Ga0190293_10538583	F102489	MNMSSRKGYRSELDAVHEYEKRGWTVYKPQKVSRFGTQDIFGMFDLVAISPPSPNGCEIHFVQVKSNNTRGFLKKLKNWREKHKVKEVKWLLMVRMDARKHKRKWKVYH
Ga0190293_1055747	Ga0190293_10557472	F049002	MSEGNHDKVQKELTRAIQKDAPCTFDEPIPVTITLDNGVIYKGDAVEVQPKSDNFPLGLVMVRTANSDLGVPVSYIKGR
Ga0190293_1058402	Ga0190293_10584021	F102576	MNDLLMLDKYFPEGNLEGGIELANRLDWGITVQMAGEGYVVSSGDEPILRAEHKDALQSFIYGLGLAYAILPEKVFTSLEKALKDL
Ga0190293_1063851	Ga0190293_10638512	F094909	MINKKVLDWIEGYILSRMLIFGDFVGTVKRSDLIFDVDTTSEYFRKHEGQRIQSLSLPVKSRSLSTLLGEIEACFQQGWILMDNREWTEADFDRVYELSRQISQEIMVLREQFDQEIPEPYYPLADPTRHK
Ga0190293_1066073	Ga0190293_10660732	F057384	MTDKRMTEATINASLDAYLHGAEQGDAYQARHLHEMLDLMLTEREIPAGQLWLTDHGKTLLADMHRQLSHCEGGGDHLRNTVLDAVQFRPRRGNWQDTYSYLRDLRIAITVANELCEQRCASGKPSITRAAEAIADRGEFGLDPARICEVYDEVASTVGGFKEFSNC
Ga0190293_1067416	Ga0190293_10674161	F036294	MDRGSSDEAIVGVKLTAIEDAVTYLRIKLSESDMDVGAEGRNK
Ga0190293_1068463	Ga0190293_10684631	F031503	MERKEMMELFKATAEVNTPEGMAAYRAFAAALTTPILQKLELDSIMRQLFTVERLGPGAQAVYPVAEDFEIPVWVLPGLGYVAQNFIEGIGEEVYIPTFSIAASADWKITYARDSRIDIAQRSANRAAKDLANYEEECGWRVIMPAATSAFSGKGLLGSRPAPIYEISPSAQ
Ga0190293_1080835	Ga0190293_10808352	F031503	MDRKEMMELFKATAEINTPEGVAAYRAFAAALTTPILQKIELESIMRQLFAVERLAPGAQAVYPVAEDFEIPVWVLPGLGYVAQNFIEGIGEEVYVPTFTIDASADWKITYARDSRIDIPSRAAARAAKDLANYEEECGWRVIMPAATASFTGK
Ga0190293_1086122	Ga0190293_10861223	F014681	LSMKMLNKLMAFLMAMTSELKDDTRGMIDLGIVLAIGVAFVGLMVVAYIIFTVSDSLNATGAAANTIANITTGFDDAVALILIAITIFILAIAISALLMLRGRNN
Ga0190293_1088005	Ga0190293_10880051	F075466	MNDEKVLCSNTLTIRFDQLEDNRVNWYVEPDDNVFENQALSLIELAECEAPLSALGIRALWKLCMDGLVFNALEQANSINFDVSKRLVAGPVVAELELAPEGATIN
Ga0190293_1091433	Ga0190293_10914331	F030933	MTDNLQLRETQRKRSQAVKTAWVLGFIAFGIFAVFIAAAVLGH
Ga0190293_1118548	Ga0190293_11185482	F048322	MFWCLQKMQEYWWYVEAFCKYSERRELVQIVGKNRSI
Ga0190293_1129980	Ga0190293_11299802	F092081	MKQIKRNLLVAVLATLVLAAALTAGWLTADAGAPPQAIAEAPESTTEEPLPDFQPTERLPADSAAAFPTDI
Ga0190293_1136437	Ga0190293_11364372	F033045	EVGPQHIVIINHLGHYMKISELELPQHLFAETTSSGGAGDKLIAPDILVSWAEQGRGDAIYRLCHKVYERRLASINAWESGRIQQLEEELMLSGNDEDRSGSKYVNVKHYHTTLEDVVREAELNRASVKERMTDHQTAIENLVREAREFISAFVVQQDEGNMLTYLLVIVVVAAAGYAFF
Ga0190293_1137799	Ga0190293_11377991	F100426	MARNRIIYASQSVWVNGEVLYRVQSLGTTTTFTSEDIFELGHLDIVDVVDDVPAVAVTLNSNDFGDVKTLAVLAQLAPAKIGME
Ga0190293_1143451	Ga0190293_11434511	F048322	MCKPLMLWCLQKTQEYWWYAEAFCKRLERKELVQIAGENRSI
Ga0190293_1160805	Ga0190293_11608051	F100426	MARNRIIYASQSVWANGDVLYRVQSLGTTTTFTSEDIFELGHLDIIDVVDDVPAVAVTLNTNEFGDVETFAMLAQVQPIKRAMDASAVDATANLVAEYGTYT
Ga0190293_1163719	Ga0190293_11637192	F026568	MHKHTDHKEFYDPFAHYIRGVLSFDDDAYTFVAYRMPYKELDNRTWESEQAFTADYQRLIARKYSV
Ga0190293_1180979	Ga0190293_11809792	F105200	VPDSSFDRKLENLLEYSESPQPEAFTMDVMHSVQRERRTRKLILWAFGLVGALFGLAGVVMLSGSITRLFTFTVTIPATETMQVVLFIVAAAAFYTWFMNDDLPLDS
Ga0190293_1182747	Ga0190293_11827471	F074897	MTIDIQFPQLDAKTRRIAEQLAREALVSTQVLSDELQQYVEELDGHSSSDEFFDRDVAKRITALCWKLLDALPEEPDERQHRLTQLAINYFVLAEDAQDDNYSMAGFEDDLQVVI
Ga0190293_1183942	Ga0190293_11839422	F059476	AHGHKPVRARLAGKIMAEQGNRQQSTRMVVTVVLLVLLALGFFAASFFVLIK

Showing 1 to 54 of 54 entries

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300021514: Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4869-30-0-1_MG

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences