Sample 3300021490

Overview

Basic Information
IMG/M Taxon OID	3300021490 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0129088 \| Gp0215255 \| Ga0190330
Sample Name	Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-3-4_MG
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	124187887
Sequencing Scaffolds	21
Novel Protein Genes	22
Associated Families	20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Archaea	3
Not Available	7
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → unclassified Methanosarcinales → Methanosarcinales archaeon	1
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Microbial Communities From Sediments And Microbial Mats In Various Locations
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine hydrothermal vent biome → marine hydrothermal vent → sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Mexico: Guaymas Basin
Coordinates	Lat. (^o)	27.0114	Long. (^o)	-110.5956	Alt. (m)	N/A	Depth (m)	2011
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F003492	Metagenome / Metatranscriptome	483	Y
F008424	Metagenome / Metatranscriptome	333	Y
F009962	Metagenome / Metatranscriptome	310	Y
F013702	Metagenome / Metatranscriptome	269	Y
F015742	Metagenome / Metatranscriptome	252	Y
F025034	Metagenome	203	Y
F027047	Metagenome	196	Y
F029623	Metagenome	187	Y
F034978	Metagenome	173	Y
F036471	Metagenome / Metatranscriptome	170	Y
F044784	Metagenome	154	Y
F049236	Metagenome	147	Y
F050065	Metagenome	145	Y
F055007	Metagenome / Metatranscriptome	139	Y
F056171	Metagenome / Metatranscriptome	138	Y
F060924	Metagenome / Metatranscriptome	132	Y
F065253	Metagenome / Metatranscriptome	128	Y
F085719	Metagenome / Metatranscriptome	111	N
F094909	Metagenome	105	Y
F102576	Metagenome	101	Y

Family

Category

Number of Sequences

3D Structure?

F003492

Metagenome / Metatranscriptome

483

F008424

Metagenome / Metatranscriptome

333

F009962

Metagenome / Metatranscriptome

310

F013702

Metagenome / Metatranscriptome

269

F015742

Metagenome / Metatranscriptome

252

F025034

Metagenome

203

F027047

Metagenome

196

F029623

Metagenome

187

F034978

Metagenome

173

F036471

Metagenome / Metatranscriptome

170

F044784

Metagenome

154

F049236

Metagenome

147

F050065

Metagenome

145

F055007

Metagenome / Metatranscriptome

139

F056171

Metagenome / Metatranscriptome

138

F060924

Metagenome / Metatranscriptome

132

F065253

Metagenome / Metatranscriptome

128

F085719

Metagenome / Metatranscriptome

111

F094909

Metagenome

105

F102576

Metagenome

101

Scaffold	Taxonomy	Length	IMG/M Link
Ga0190330_1001559	All Organisms → cellular organisms → Bacteria → Proteobacteria	5346	Open in IMG/M
Ga0190330_1006029	All Organisms → Viruses → Predicted Viral	2136	Open in IMG/M
Ga0190330_1008433	All Organisms → Viruses → Predicted Viral	1746	Open in IMG/M
Ga0190330_1011017	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1472	Open in IMG/M
Ga0190330_1016910	All Organisms → cellular organisms → Archaea	1121	Open in IMG/M
Ga0190330_1022366	All Organisms → cellular organisms → Archaea	941	Open in IMG/M
Ga0190330_1022594	Not Available	935	Open in IMG/M
Ga0190330_1026207	Not Available	848	Open in IMG/M
Ga0190330_1028329	Not Available	808	Open in IMG/M
Ga0190330_1028486	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	805	Open in IMG/M
Ga0190330_1030004	Not Available	778	Open in IMG/M
Ga0190330_1034567	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	710	Open in IMG/M
Ga0190330_1035136	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	703	Open in IMG/M
Ga0190330_1036901	All Organisms → cellular organisms → Archaea	683	Open in IMG/M
Ga0190330_1037742	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	673	Open in IMG/M
Ga0190330_1037783	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	673	Open in IMG/M
Ga0190330_1037874	Not Available	672	Open in IMG/M
Ga0190330_1041515	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → unclassified Methanosarcinales → Methanosarcinales archaeon	635	Open in IMG/M
Ga0190330_1046118	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	595	Open in IMG/M
Ga0190330_1050302	Not Available	565	Open in IMG/M
Ga0190330_1054347	Not Available	539	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0190330_1001559

All Organisms → cellular organisms → Bacteria → Proteobacteria

5346

Open in IMG/M

Ga0190330_1006029

All Organisms → Viruses → Predicted Viral

2136

Open in IMG/M

Ga0190330_1008433

All Organisms → Viruses → Predicted Viral

1746

Open in IMG/M

Ga0190330_1011017

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium

1472

Open in IMG/M

Ga0190330_1016910

All Organisms → cellular organisms → Archaea

1121

Open in IMG/M

Ga0190330_1022366

All Organisms → cellular organisms → Archaea

941

Open in IMG/M

Ga0190330_1022594

Not Available

935

Open in IMG/M

Ga0190330_1026207

Not Available

848

Open in IMG/M

Ga0190330_1028329

Not Available

808

Open in IMG/M

Ga0190330_1028486

All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon

805

Open in IMG/M

Ga0190330_1030004

Not Available

778

Open in IMG/M

Ga0190330_1034567

All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.

710

Open in IMG/M

Ga0190330_1035136

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes

703

Open in IMG/M

Ga0190330_1036901

All Organisms → cellular organisms → Archaea

683

Open in IMG/M

Ga0190330_1037742

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi

673

Open in IMG/M

Ga0190330_1037783

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

673

Open in IMG/M

Ga0190330_1037874

Not Available

672

Open in IMG/M

Ga0190330_1041515

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → unclassified Methanosarcinales → Methanosarcinales archaeon

635

Open in IMG/M

Ga0190330_1046118

All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium

595

Open in IMG/M

Ga0190330_1050302

Not Available

565

Open in IMG/M

Ga0190330_1054347

Not Available

539

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0190330_1001559	Ga0190330_10015591	F094909	QSLVYWYEYCSLMVAMFNEKVLDWIEGYVLTRMLIFGDFVGTVNRTELMFDLDTSSDYFRIYEGQRIQALSLPVKSRRLCTLLGEIEACFQGGWKLLDAQEWTEADFNEVFELSKQISAEIMALREEYKRDGSERRSDQVGINLGGSQ
Ga0190330_1006029	Ga0190330_10060295	F008424	MEKKINILERLLYLTLIAGICFFTGVFYTYYKIDQRLWNEEILKARDIETRYLNYPTKRNYKKDDLERIIYGN
Ga0190330_1006029	Ga0190330_10060297	F015742	MDSKKAYEQFKEEIVDRESAYLCTELERALDRIINYTDPLDETMFRDIKASAIKLLKEWH
Ga0190330_1008433	Ga0190330_10084334	F025034	MDSRKAYELMKEEYIDKEAAELCNQIENQLERIVSYDDGFLDDRTFNEIKKHAIKLLKEWHL
Ga0190330_1011017	Ga0190330_10110171	F094909	VLSRMLIFGDFVGTVKRSDLIFDLDTTSEYFRKHEGQRIQSLSLPVKSRNLSTLLGEIEDCFQKGWILMDNGEWTEAEFDRVYELSRQISAEIMVLREQFDQEIPEPYYPVSNPLHFK
Ga0190330_1016910	Ga0190330_10169102	F029623	MKNVYAKYVRARLGQGNLIIEVSKDAFKSDEAKKETVKELKQIIKTYFNLRFFIRLSIVYAFTALFCACVALVIVLVR
Ga0190330_1022366	Ga0190330_10223661	F025034	MDSKKAYEIMKEEYVDREALELCNQIEKQLERIISYDDGFLNDRTFDEIKKSAIKLLKEWHL
Ga0190330_1022594	Ga0190330_10225941	F049236	VNAVAKADIKFVNNVDGGNMLTIHGGSMLGAPQIVYTSVSPAYDITNGDIVYEDASLTSPFDGDDTFYWSAPSCSSPAFTAYADIDNDGELSSRFCVEV
Ga0190330_1026207	Ga0190330_10262071	F009962	MSTLQFMGRGELVPRLIAQLGGNKEFAYALLKKRGDMNAEGKLTAKGEKRNQMTAEERAFDRAGESPHTHTYNPETNRVEKN
Ga0190330_1028329	Ga0190330_10283293	F013702	RIVQDMEIVEREACYLIDTIETTLERIVNYNDLNEQEIKSIKDMAIMMLQEWS
Ga0190330_1028486	Ga0190330_10284863	F085719	MTKTYRNIPYTFMVNETWNGIKYDNYHCNDKDLLDGLDTVSFTKLSEQDMKNEIDHFLDKKQDLLHIQDLVHEARI
Ga0190330_1030004	Ga0190330_10300042	F044784	QRYWEVELKDGTIIREGQMEWREVPKKAIIRLSLFFDGRSWHLTNKEAYFVKYRASMIPGIQESFRLERRTIGFYEGRSKVCYHVDETTGRFYMEVIDTNAAN
Ga0190330_1034567	Ga0190330_10345672	F060924	IGIGIPRGLTGNAGFPTAFDEIVSESGDFIIAESGAYPTYMIVE
Ga0190330_1035136	Ga0190330_10351361	F065253	MDGMFFHVEQRRAWIRAHTHTVVYDRDPDFPRFSGDPSGTVKRMVRIWLAESGPEQPRLQAYLGTVTFCFAGPSFRELCRLFRLASRAAKAAGQSAQGLRRDLATLVRRYVREEYGP
Ga0190330_1036901	Ga0190330_10369011	F003492	MDKKLLTDDIIIGKLEKDGFMEEPDGPWLLEYIEEQHGGKLDKTSGYVDDRHSLKIYSESTYDGYDIWWCTYDEKPYISQDGFYYEDYTEWSSRALDELTSGSDVWVEPHLWDDMEYEFNYELEQWWQDVYQELFDEKKD
Ga0190330_1037742	Ga0190330_10377422	F102576	MNDLLMLDKYFPEGNLEGGIELANRLDWGITVQMAGEGYVVSSGDEPILRAEHKDALQSFIYGLGLAYAILPEKVFISLEKALKDL
Ga0190330_1037783	Ga0190330_10377832	F036471	MQNRLNLWQRLKPEYKKQLKKSNKKYSYKMASIKDELKNTYWFTDVKYGTAFDVMTPNKLNFLGDAFNANKGYE
Ga0190330_1037874	Ga0190330_10378741	F056171	MRKFTHKAIIAITYATAIGLTTMAISGIGFLIFGLITGQLNADFGIYR
Ga0190330_1041515	Ga0190330_10415152	F050065	VSDVEQVKFVIAYLKGLLRDAKRRGDKEVARYIGEIIGVYEARLQSQNNNN
Ga0190330_1046118	Ga0190330_10461182	F055007	FTCGCQKASLGNGVIVCKQCKAKVDADVSTSSNLNRELARQQIQDLRNK
Ga0190330_1050302	Ga0190330_10503021	F027047	MDVGSLLVAIFSAVVYSLSMYVKKHLNSENPQSFDVAKFITTVIWGAIVGAALQLSGVPISEQAVEEQFVAYAGLVAITENVVKA
Ga0190330_1054347	Ga0190330_10543471	F034978	MNEIVVRATKEQINEFKESLLWQDIVNELMNWKEGFNREMQSIVDDAAVENPSTASVLLHMGDLNGRQKAVDYMINILDMFLSILESKEQENDS

Scaffold ID

Protein ID

Family

Sequence

Ga0190330_1001559

Ga0190330_10015591

F094909

QSLVYWYEYCSLMVAMFNEKVLDWIEGYVLTRMLIFGDFVGTVNRTELMFDLDTSSDYFRIYEGQRIQALSLPVKSRRLCTLLGEIEACFQGGWKLLDAQEWTEADFNEVFELSKQISAEIMALREEYKRDGSERRSDQVGINLGGSQ

Ga0190330_1006029

Ga0190330_10060295

F008424

MEKKINILERLLYLTLIAGICFFTGVFYTYYKIDQRLWNEEILKARDIETRYLNYPTKRNYKKDDLERIIYGN

Ga0190330_1006029

Ga0190330_10060297

F015742

MDSKKAYEQFKEEIVDRESAYLCTELERALDRIINYTDPLDETMFRDIKASAIKLLKEWH

Ga0190330_1008433

Ga0190330_10084334

F025034

MDSRKAYELMKEEYIDKEAAELCNQIENQLERIVSYDDGFLDDRTFNEIKKHAIKLLKEWHL

Ga0190330_1011017

Ga0190330_10110171

F094909

VLSRMLIFGDFVGTVKRSDLIFDLDTTSEYFRKHEGQRIQSLSLPVKSRNLSTLLGEIEDCFQKGWILMDNGEWTEAEFDRVYELSRQISAEIMVLREQFDQEIPEPYYPVSNPLHFK

Ga0190330_1016910

Ga0190330_10169102

F029623

MKNVYAKYVRARLGQGNLIIEVSKDAFKSDEAKKETVKELKQIIKTYFNLRFFIRLSIVYAFTALFCACVALVIVLVR

Ga0190330_1022366

Ga0190330_10223661

F025034

MDSKKAYEIMKEEYVDREALELCNQIEKQLERIISYDDGFLNDRTFDEIKKSAIKLLKEWHL

Ga0190330_1022594

Ga0190330_10225941

F049236

VNAVAKADIKFVNNVDGGNMLTIHGGSMLGAPQIVYTSVSPAYDITNGDIVYEDASLTSPFDGDDTFYWSAPSCSSPAFTAYADIDNDGELSSRFCVEV

Ga0190330_1026207

Ga0190330_10262071

F009962

MSTLQFMGRGELVPRLIAQLGGNKEFAYALLKKRGDMNAEGKLTAKGEKRNQMTAEERAFDRAGESPHTHTYNPETNRVEKN

Ga0190330_1028329

Ga0190330_10283293

F013702

RIVQDMEIVEREACYLIDTIETTLERIVNYNDLNEQEIKSIKDMAIMMLQEWS

Ga0190330_1028486

Ga0190330_10284863

F085719

MTKTYRNIPYTFMVNETWNGIKYDNYHCNDKDLLDGLDTVSFTKLSEQDMKNEIDHFLDKKQDLLHIQDLVHEARI

Ga0190330_1030004

Ga0190330_10300042

F044784

QRYWEVELKDGTIIREGQMEWREVPKKAIIRLSLFFDGRSWHLTNKEAYFVKYRASMIPGIQESFRLERRTIGFYEGRSKVCYHVDETTGRFYMEVIDTNAAN

Ga0190330_1034567

Ga0190330_10345672

F060924

IGIGIPRGLTGNAGFPTAFDEIVSESGDFIIAESGAYPTYMIVE

Ga0190330_1035136

Ga0190330_10351361

F065253

MDGMFFHVEQRRAWIRAHTHTVVYDRDPDFPRFSGDPSGTVKRMVRIWLAESGPEQPRLQAYLGTVTFCFAGPSFRELCRLFRLASRAAKAAGQSAQGLRRDLATLVRRYVREEYGP

Ga0190330_1036901

Ga0190330_10369011

F003492

MDKKLLTDDIIIGKLEKDGFMEEPDGPWLLEYIEEQHGGKLDKTSGYVDDRHSLKIYSESTYDGYDIWWCTYDEKPYISQDGFYYEDYTEWSSRALDELTSGSDVWVEPHLWDDMEYEFNYELEQWWQDVYQELFDEKKD

Ga0190330_1037742

Ga0190330_10377422

F102576

MNDLLMLDKYFPEGNLEGGIELANRLDWGITVQMAGEGYVVSSGDEPILRAEHKDALQSFIYGLGLAYAILPEKVFISLEKALKDL

Ga0190330_1037783

Ga0190330_10377832

F036471

MQNRLNLWQRLKPEYKKQLKKSNKKYSYKMASIKDELKNTYWFTDVKYGTAFDVMTPNKLNFLGDAFNANKGYE

Ga0190330_1037874

Ga0190330_10378741

F056171

MRKFTHKAIIAITYATAIGLTTMAISGIGFLIFGLITGQLNADFGIYR

Ga0190330_1041515

Ga0190330_10415152

F050065

VSDVEQVKFVIAYLKGLLRDAKRRGDKEVARYIGEIIGVYEARLQSQNNNN

Ga0190330_1046118

Ga0190330_10461182

F055007

FTCGCQKASLGNGVIVCKQCKAKVDADVSTSSNLNRELARQQIQDLRNK

Ga0190330_1050302

Ga0190330_10503021

F027047

MDVGSLLVAIFSAVVYSLSMYVKKHLNSENPQSFDVAKFITTVIWGAIVGAALQLSGVPISEQAVEEQFVAYAGLVAITENVVKA

Ga0190330_1054347

Ga0190330_10543471

F034978

MNEIVVRATKEQINEFKESLLWQDIVNELMNWKEGFNREMQSIVDDAAVENPSTASVLLHMGDLNGRQKAVDYMINILDMFLSILESKEQENDS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300021490: Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-3-4_MG

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences