NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300020303

3300020303: Marine microbial communities from Tara Oceans - TARA_B100000745 (ERX556095-ERR599124)



Overview

Basic Information
IMG/M Taxon OID3300020303 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0117946 | Gp0117270 | Ga0211692
Sample NameMarine microbial communities from Tara Oceans - TARA_B100000745 (ERX556095-ERR599124)
Sequencing StatusPermanent Draft
Sequencing CenterCEA Genoscope
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size122887323
Sequencing Scaffolds88
Novel Protein Genes118
Associated Families116

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota1
All Organisms → cellular organisms → Archaea → Euryarchaeota2
All Organisms → Viruses → Predicted Viral9
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1
Not Available52
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → unclassified Nitrososphaerales → Nitrososphaerales archaeon2
All Organisms → Viruses → environmental samples → uncultured marine virus1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium3
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon3
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote3
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium TMED561
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium1
All Organisms → cellular organisms → Archaea1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomemarine water bodysea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationTARA_078
CoordinatesLat. (o)-30.3455Long. (o)-43.2924Alt. (m)N/ADepth (m)800
Location on Map
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Associated Families

Associated Scaffolds

Sequences


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