Basic Information | |
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IMG/M Taxon OID | 3300020256 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0114795 | Gp0117245 | Ga0211645 |
Sample Name | Marine microbial communities from Tara Oceans - TARA_B100000929 (ERX556010-ERR599067) |
Sequencing Status | Permanent Draft |
Sequencing Center | CEA Genoscope |
Published? | Y |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 182323738 |
Sequencing Scaffolds | 46 |
Novel Protein Genes | 48 |
Associated Families | 48 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus koreensis | 1 |
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae | 1 |
Not Available | 33 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1 |
All Organisms → Viruses → Predicted Viral | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → Nitrospinia → Nitrospinales → Nitrospinaceae → Nitrospina | 1 |
All Organisms → cellular organisms → Bacteria | 3 |
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1 |
All Organisms → Viruses → environmental samples → uncultured Mediterranean phage | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium MED-G40 | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Marine Microbial Communities From Tara Oceans |
Type | Environmental |
Taxonomy | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | marine biome → marine water body → planktonic material |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
Location Information | ||||||||
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Location | TARA_109 | |||||||
Coordinates | Lat. (o) | 2.1008 | Long. (o) | -84.5107 | Alt. (m) | N/A | Depth (m) | 380 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000711 | Metagenome / Metatranscriptome | 925 | Y |
F001081 | Metagenome / Metatranscriptome | 784 | Y |
F001620 | Metagenome / Metatranscriptome | 662 | Y |
F002232 | Metagenome / Metatranscriptome | 580 | Y |
F006126 | Metagenome / Metatranscriptome | 381 | Y |
F007755 | Metagenome / Metatranscriptome | 345 | Y |
F010250 | Metagenome / Metatranscriptome | 306 | N |
F010876 | Metagenome / Metatranscriptome | 298 | Y |
F012162 | Metagenome / Metatranscriptome | 283 | Y |
F012354 | Metagenome | 281 | Y |
F013190 | Metagenome / Metatranscriptome | 273 | Y |
F013235 | Metagenome | 273 | N |
F013358 | Metagenome / Metatranscriptome | 272 | N |
F015788 | Metagenome / Metatranscriptome | 252 | Y |
F016978 | Metagenome | 243 | Y |
F019844 | Metagenome | 227 | N |
F020787 | Metagenome / Metatranscriptome | 222 | N |
F022427 | Metagenome / Metatranscriptome | 214 | N |
F023453 | Metagenome / Metatranscriptome | 210 | Y |
F026715 | Metagenome / Metatranscriptome | 197 | Y |
F029782 | Metagenome / Metatranscriptome | 187 | Y |
F029783 | Metagenome | 187 | N |
F031152 | Metagenome | 183 | N |
F033592 | Metagenome / Metatranscriptome | 177 | Y |
F035075 | Metagenome / Metatranscriptome | 173 | Y |
F037425 | Metagenome / Metatranscriptome | 168 | Y |
F042560 | Metagenome | 158 | Y |
F042933 | Metagenome / Metatranscriptome | 157 | Y |
F045576 | Metagenome / Metatranscriptome | 152 | N |
F049047 | Metagenome / Metatranscriptome | 147 | N |
F049927 | Metagenome | 146 | Y |
F050430 | Metagenome / Metatranscriptome | 145 | N |
F054102 | Metagenome | 140 | Y |
F064793 | Metagenome / Metatranscriptome | 128 | N |
F065856 | Metagenome | 127 | N |
F070221 | Metagenome | 123 | N |
F076500 | Metagenome / Metatranscriptome | 118 | Y |
F080484 | Metagenome | 115 | N |
F081452 | Metagenome / Metatranscriptome | 114 | N |
F084705 | Metagenome | 112 | Y |
F084713 | Metagenome | 112 | Y |
F086145 | Metagenome / Metatranscriptome | 111 | N |
F087030 | Metagenome / Metatranscriptome | 110 | N |
F092217 | Metagenome | 107 | Y |
F092225 | Metagenome | 107 | N |
F098016 | Metagenome / Metatranscriptome | 104 | N |
F099440 | Metagenome / Metatranscriptome | 103 | N |
F105497 | Metagenome | 100 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
---|---|---|---|
Ga0211645_1004208 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus koreensis | 2567 | Open in IMG/M |
Ga0211645_1004733 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae | 2411 | Open in IMG/M |
Ga0211645_1005279 | Not Available | 2287 | Open in IMG/M |
Ga0211645_1005330 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 2276 | Open in IMG/M |
Ga0211645_1007817 | Not Available | 1852 | Open in IMG/M |
Ga0211645_1008296 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1796 | Open in IMG/M |
Ga0211645_1010989 | All Organisms → Viruses → Predicted Viral | 1549 | Open in IMG/M |
Ga0211645_1011308 | Not Available | 1526 | Open in IMG/M |
Ga0211645_1016987 | Not Available | 1237 | Open in IMG/M |
Ga0211645_1017104 | Not Available | 1232 | Open in IMG/M |
Ga0211645_1018541 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 1182 | Open in IMG/M |
Ga0211645_1018653 | Not Available | 1179 | Open in IMG/M |
Ga0211645_1020469 | All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → Nitrospinia → Nitrospinales → Nitrospinaceae → Nitrospina | 1123 | Open in IMG/M |
Ga0211645_1021125 | All Organisms → cellular organisms → Bacteria | 1106 | Open in IMG/M |
Ga0211645_1022180 | Not Available | 1078 | Open in IMG/M |
Ga0211645_1025937 | All Organisms → cellular organisms → Bacteria | 993 | Open in IMG/M |
Ga0211645_1026210 | Not Available | 988 | Open in IMG/M |
Ga0211645_1030177 | Not Available | 918 | Open in IMG/M |
Ga0211645_1032170 | Not Available | 887 | Open in IMG/M |
Ga0211645_1033921 | Not Available | 862 | Open in IMG/M |
Ga0211645_1041523 | Not Available | 775 | Open in IMG/M |
Ga0211645_1044177 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 750 | Open in IMG/M |
Ga0211645_1046645 | All Organisms → Viruses → environmental samples → uncultured Mediterranean phage | 729 | Open in IMG/M |
Ga0211645_1050026 | Not Available | 703 | Open in IMG/M |
Ga0211645_1050027 | Not Available | 703 | Open in IMG/M |
Ga0211645_1050174 | Not Available | 702 | Open in IMG/M |
Ga0211645_1051444 | Not Available | 693 | Open in IMG/M |
Ga0211645_1056003 | Not Available | 663 | Open in IMG/M |
Ga0211645_1056752 | Not Available | 658 | Open in IMG/M |
Ga0211645_1056779 | Not Available | 658 | Open in IMG/M |
Ga0211645_1057449 | Not Available | 654 | Open in IMG/M |
Ga0211645_1057816 | Not Available | 652 | Open in IMG/M |
Ga0211645_1061714 | Not Available | 629 | Open in IMG/M |
Ga0211645_1065958 | Not Available | 607 | Open in IMG/M |
Ga0211645_1072940 | Not Available | 575 | Open in IMG/M |
Ga0211645_1076929 | Not Available | 558 | Open in IMG/M |
Ga0211645_1077777 | Not Available | 555 | Open in IMG/M |
Ga0211645_1080533 | All Organisms → cellular organisms → Bacteria | 544 | Open in IMG/M |
Ga0211645_1082420 | Not Available | 537 | Open in IMG/M |
Ga0211645_1083759 | Not Available | 532 | Open in IMG/M |
Ga0211645_1087554 | Not Available | 519 | Open in IMG/M |
Ga0211645_1087565 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium MED-G40 | 519 | Open in IMG/M |
Ga0211645_1089034 | Not Available | 514 | Open in IMG/M |
Ga0211645_1090383 | Not Available | 509 | Open in IMG/M |
Ga0211645_1092065 | Not Available | 504 | Open in IMG/M |
Ga0211645_1093116 | Not Available | 501 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0211645_1004208 | Ga0211645_10042081 | F012354 | LPVCVIASSMIYPSAKTPKPIPIAKKAIVSRNSVGLPVFLNPIYEITPIITPTEKPIKFRIISNKNSNVANLLAVLNKV |
Ga0211645_1004733 | Ga0211645_10047331 | F076500 | MTISKDDLLKRKEEIVTDYNKLVEEIGKGEQNLKVMR |
Ga0211645_1005279 | Ga0211645_10052792 | F084705 | LVKHGFMLSPQALFALTYVSAVPLIAFSIETDMNNNPRAKKWYGVFGVIFFVIAVVAYIFFLIELLSY |
Ga0211645_1005330 | Ga0211645_10053301 | F013235 | NNKQGWTSKLETPRGVNTPYIGSYMNSKLGDVKVSNKSLETFYGDKIKP |
Ga0211645_1007817 | Ga0211645_10078173 | F001620 | MDAATLVTIITMFIVTDTSSEFVKYDGLMDCLKDKRKIEKMKDGRRVICGPSMAEIDAEGNIISIKNKMPDQSGSLKLGGTAKSLIEKKKEKKTKVLTQ |
Ga0211645_1008296 | Ga0211645_10082962 | F035075 | LICIDDNAISVKYVNKKNQRRLWDTLKNIEAVEKWAQKKEELERKIKKNNPIDGRYK |
Ga0211645_1010989 | Ga0211645_10109893 | F006126 | MSDLSFNKFTKGLNERRYIGPEGTAEFKKLSPKMRAAVNDVYSRINKAPDPIVSKIEGIIRVVAKKHGVSTYDIEDYFDNELIK |
Ga0211645_1011308 | Ga0211645_10113082 | F092225 | MRKIAILSLLVFLNACGMTAPGFLATGTGAYSEYKVTSLIKTGTDLALSAADLPTTNDMVLSRITGYECKVSRALKEGIEYICKDVKVILPPTYTTIDNDEKK |
Ga0211645_1016987 | Ga0211645_10169872 | F099440 | MQLIILENQVLNGVKLIDENGRKIMVCGLHNTGQEKYIENFSQWTCNLLASCIV |
Ga0211645_1017104 | Ga0211645_10171041 | F026715 | NAVQLDGKTLRSRVNADAGYSFDVSTPFTSSHYTAGQKDVNLSPETTIEMQERNRNSFYSLNSYQVRGVSVSNGYAYGGPRVKNLSTYAFSAFAANNAITLEGGTGEGEILLENESGVLQHPQSDSWSTTVADWNTLRFTGSLNTNVDGETMRLSDINGTNSSQNHKINWAFPTEVTKSA |
Ga0211645_1018541 | Ga0211645_10185412 | F001081 | MKELKIPKKHTKICDNCRGNGFIKVVNNNRQTNVHQCWVCKSEGEIKNYDQAEVDDFIYDFYYRERLH |
Ga0211645_1018653 | Ga0211645_10186531 | F092217 | VEILAYAIVTFALIGLLSNFFFIFFEEANNELNEEYKDD |
Ga0211645_1018653 | Ga0211645_10186532 | F016978 | MIKPGIEPFAKFKVGDKIRGRDALGIVDGQPGIVREVHASYPTADDYDDLTNPGIVYAVQFMKGNFLLKDYQMDLLGKQQLFNFMYDFSHIAEMENGNSEPLEXTTDIMQ |
Ga0211645_1020469 | Ga0211645_10204692 | F086145 | MRRIVCKGYAGCWGGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKISIIVRV |
Ga0211645_1021125 | Ga0211645_10211252 | F049047 | MPDYPSLNEEQSKEVMLDTNDFIKEQLSSTPFHVNLVLTFVGFIFLCLILAIKPVQIFKKEKHSDGSIILSVIALNKYLSSFARVYRSLTALAFYEHPKVIKIIDSQHGVSRKSN |
Ga0211645_1022180 | Ga0211645_10221802 | F049927 | KIVKIAVPTTYKAVGNVAKDFIDAICDPIIPLKKTVIVAAVNPKT |
Ga0211645_1025937 | Ga0211645_10259372 | F064793 | MTKKNKLKNGSTNSKELVEVLSMIDKSRKKLSANLKSSPAVVLDLICAANKLDKFIKTSKNIK |
Ga0211645_1026210 | Ga0211645_10262102 | F015788 | MKMKRKCPNCQMNTCKQIAEGISHHQWYGYYECEQCKRIRTYKINRPATIETEYSWGATESTPIGINAKDWPTHD |
Ga0211645_1030177 | Ga0211645_10301772 | F065856 | MMNRDKKGQNNQEIGKTEQSSQGDQFRQPSIYSRHDDVCFLDQADHQNSDN |
Ga0211645_1032170 | Ga0211645_10321702 | F087030 | MKIMLIVYICASIGGTCDTWVKETHFDDWDSCMRAGYTTSLDLIKEAGPEYVNKSRMYVKFICKTVPVEEKKT |
Ga0211645_1033921 | Ga0211645_10339211 | F070221 | ISLLLFIGLAFWGCEDSENNATNETGDFYISNEFLRCGQTYQVTISLPSNDTIGIVYNIEWNNLIKKLPRPVSYNDELIRVDTIFTEYDQCGNAIFTDYKMLSDYPDSTGIPDHPVDSVRNTYTDYWKLIQSISYYKYWDNSISNFTWDGLTRIKVDDPNSYTIHNEYGISLGNSFMQVETMDDGKRIKSKNMLDGSISWTYEWDGYSYEMWMNSSTNQSGYQTGTIDEYANEIEYILYDCSVDPCVPTQKTIFEFDCTMFEPIPM |
Ga0211645_1041523 | Ga0211645_10415232 | F010876 | SSPLYRFILQEGKFKGVEFYFKNVELDHKPAPGAFDIAFEYEIIGGNYRDHGYPADKEYMNRAITEKNRDQFQVEIGKILKNLLILNDPRVILHKGRDL |
Ga0211645_1044177 | Ga0211645_10441771 | F029782 | RLKEKPESEWKFHELSLDKFPGGFERELDWAGRYKKRNSDPKQKHEYKIEVINE |
Ga0211645_1046645 | Ga0211645_10466452 | F022427 | GGTYDIDQTSTGTINLDVDGASANVSIEQTSSGTVSIDAAGASFTADIDQDNASTLELHHDGASADYVILQTGGSGDIIDLEVNGASANVDIIQRD |
Ga0211645_1050026 | Ga0211645_10500261 | F042933 | MKKGDKNMAVEKDINGLDFIYENKDELVFEPDPNQLEPIEDEIED |
Ga0211645_1050027 | Ga0211645_10500271 | F000711 | METINEPDHPTDYRIVKLMDGSLLMGTISVDDNHMRIENPLELTTIPRMTEFGLKEDTTLAQWIPFTKDKEFVITKDKVVVISLATVELAHFYEVVLNKMQNEVRRPRPALTPDDIDRILDIAEEMDNTEFMRDDEPHDMIGGYKIDSKKLH |
Ga0211645_1050174 | Ga0211645_10501742 | F013358 | MSIRPKTVCDSCSATYILVHELPEDVYTEQYCPFCGEEHEDIEEDVLLNEDWD |
Ga0211645_1051444 | Ga0211645_10514442 | F081452 | MIPVLSLAQFAREDAVIFDASRIFKDPTNFNIIISDKAA |
Ga0211645_1056003 | Ga0211645_10560033 | F033592 | DGDKKLSLTGKGKYGLRPGQLKFGNDKQFKLTTDSNVKSYLLVTEFRRN |
Ga0211645_1056752 | Ga0211645_10567523 | F029783 | MFVLVTEFLGRGLMIGELSGDTADFLNEIPWFDGIIYIIMLMGLYVFYKWVNKKFR |
Ga0211645_1056779 | Ga0211645_10567791 | F054102 | SVYDTSATTRYTYDYKAALAATTKFEFLNSDNSILLVLEESDKLQVTCETTGGLNLIVSALEISR |
Ga0211645_1057449 | Ga0211645_10574491 | F031152 | MTNQQKINKFAKRGYNDIPERKAVERLLTNDPNFKSWLQDYFQIDGPFQLVQDPLGEYKVDMGAVDRDGKILGLIEVDVFFSWKNEWPSHYKWCHRLGRKRKYWINTSYPYINITFSVNHKDAIVTTREIESQYPIKNKYFKYKQMTEQIVE |
Ga0211645_1057816 | Ga0211645_10578163 | F013190 | LSQLYFSNAELGQEISINATWEGSIPLNEMPSTVASKVASSTKVDIAEIIAFHSSEVFVLAENSNLIKWL |
Ga0211645_1061714 | Ga0211645_10617141 | F098016 | LSQRPLSPSDLPDETSADERLAQVSDDLPEPRLVLPLDDEEPDTPVLEDNAPVSLNGLSQHPADLGQHAAPSIELLLTRPDPAAAGSTVAQPILPGSQPVSPVPGWMSVADLHEPEDQLFLPEIPIGLPAELAEPVAAVFTNGASDAPLAE |
Ga0211645_1065958 | Ga0211645_10659581 | F105497 | SKGRDKPVTKLFPKLSVRDKEMEKLVVGTPAQKAFRAGETEHKIEGIEILIRRLKHDKKILERQAKNKAMGDSGLDFLMKDLEKSFSDVYGPHLKKYTDIDKDILQMENIKKNVIMKDRKLNATGGRIGYSGGGKAGLPAITRGLPQGPGMQGTPVPAGPQPAGTSGGDLLVQNQMQQNPWMGAQKPPMGQPPMGQPPMGQ |
Ga0211645_1072940 | Ga0211645_10729401 | F007755 | LQAARKNIMKHTFKIIYETDGMPICPDAIHKQLDLAMDDIKKQFSIQYYTLPGLHKLYLEPCGDWFPEEQKPIRFELQAPSGRVGPRAPSRKLDR |
Ga0211645_1076929 | Ga0211645_10769291 | F084713 | MPKLIIEKIQDKKVYGKDMYKVVKLIDSHRLSLLNTQFDEPSMLRYIQSLPNTYNYEIKNKTGV |
Ga0211645_1077777 | Ga0211645_10777771 | F019844 | VLHILKDFINRLFGFKDKKINKPKLTLVVNKTDNQEGKSENAIFSIIEEQFTFEEDISEEYRNELKIHLIESIENKVHPWDFEKNLDFKLKEPDKIYYLFMYYLMYIDIFEQDLFNKYTKLWYENNLDDTTKSDDEINNEALRLL |
Ga0211645_1080533 | Ga0211645_10805332 | F002232 | MSKAVKKLRKLKEQLDKLEDKEADLLSDIDIAIDELE |
Ga0211645_1082420 | Ga0211645_10824202 | F012162 | MLLTEEQTKYYLNDMIKHYREKEDNTVGSFSWQRSEAEYRRKTFEDMRIVLFGDDDNGNQRTINT |
Ga0211645_1083759 | Ga0211645_10837592 | F045576 | TFKDGTSKEGGAYLNNVLSGTIDFPNQDGGFKDFIERLEDNEWTQYIREFIDNFEGPGKSIDYEEDEFENWEHIDTFDCEYDAKQYPAEIYFYFGDKEVLFQGSGYFYVNKNIKYTKENIIDLVTSLTES |
Ga0211645_1084534 | Ga0211645_10845342 | F020787 | MPKVRFEIYSTERGKKLIDLGELLVESGYLQSFDLDEEGTEVVFNFEVNAGFDVEKSEINMEELRSYFDAADDVGKKFTDE |
Ga0211645_1087554 | Ga0211645_10875541 | F050430 | MDKLKENIIDAIKIAGMLFFLIILIGTLVWPGGVETLINLFQ |
Ga0211645_1087565 | Ga0211645_10875651 | F042560 | KLKKKGKFPIVSMVTKNNIKEFIKTVVMWLVFRISSWQ |
Ga0211645_1089034 | Ga0211645_10890341 | F023453 | MKINDIISDGNSLTELEQWGRKQTPLFEGVASAEKLSKSLLQKAVDKFKRQPEPSEEKSKEMQDYMDKLELKLGTEKVEKTTLQKFFGFFRKHPKMIGLGVMILILLSPLLPSIAVIGLSLEKILSMILAGLYAMDIASPAVKTAMEL |
Ga0211645_1090383 | Ga0211645_10903833 | F037425 | WDDFRNQYNGIIKNLLNNIDICNRRYAEEGEGGYLIQRKVYIKEIEEIKTFVKKKEIELGYYSNE |
Ga0211645_1092065 | Ga0211645_10920652 | F010250 | MWLLTKMVIFLTMYFVGLLIMLNYPQDHELGIILSFGGLLLFGLTIAQAHIKSLE |
Ga0211645_1093116 | Ga0211645_10931161 | F080484 | NANNILDSFAGIFIALHLFDVYTQTKKYNRNLSMSIFGQKTPPPTLGTIFPLKTNYKHYFNFFGFPNHRTGIGMFGYSITKRTKKNNEYYMGIGTIIINLSITAGWKYYFKKSNADDYYLAMSLVGSTLEIDDRYDETKKVSKDFIAGNFSAGYEKRLSKNIYLNM |
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