NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300020256

3300020256: Marine microbial communities from Tara Oceans - TARA_B100000929 (ERX556010-ERR599067)



Overview

Basic Information
IMG/M Taxon OID3300020256 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0114795 | Gp0117245 | Ga0211645
Sample NameMarine microbial communities from Tara Oceans - TARA_B100000929 (ERX556010-ERR599067)
Sequencing StatusPermanent Draft
Sequencing CenterCEA Genoscope
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size182323738
Sequencing Scaffolds46
Novel Protein Genes48
Associated Families48

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus koreensis1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae1
Not Available33
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1
All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → Nitrospinia → Nitrospinales → Nitrospinaceae → Nitrospina1
All Organisms → cellular organisms → Bacteria3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
All Organisms → Viruses → environmental samples → uncultured Mediterranean phage1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium MED-G401

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From Tara Oceans
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomemarine water bodyplanktonic material
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationTARA_109
CoordinatesLat. (o)2.1008Long. (o)-84.5107Alt. (m)N/ADepth (m)380
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000711Metagenome / Metatranscriptome925Y
F001081Metagenome / Metatranscriptome784Y
F001620Metagenome / Metatranscriptome662Y
F002232Metagenome / Metatranscriptome580Y
F006126Metagenome / Metatranscriptome381Y
F007755Metagenome / Metatranscriptome345Y
F010250Metagenome / Metatranscriptome306N
F010876Metagenome / Metatranscriptome298Y
F012162Metagenome / Metatranscriptome283Y
F012354Metagenome281Y
F013190Metagenome / Metatranscriptome273Y
F013235Metagenome273N
F013358Metagenome / Metatranscriptome272N
F015788Metagenome / Metatranscriptome252Y
F016978Metagenome243Y
F019844Metagenome227N
F020787Metagenome / Metatranscriptome222N
F022427Metagenome / Metatranscriptome214N
F023453Metagenome / Metatranscriptome210Y
F026715Metagenome / Metatranscriptome197Y
F029782Metagenome / Metatranscriptome187Y
F029783Metagenome187N
F031152Metagenome183N
F033592Metagenome / Metatranscriptome177Y
F035075Metagenome / Metatranscriptome173Y
F037425Metagenome / Metatranscriptome168Y
F042560Metagenome158Y
F042933Metagenome / Metatranscriptome157Y
F045576Metagenome / Metatranscriptome152N
F049047Metagenome / Metatranscriptome147N
F049927Metagenome146Y
F050430Metagenome / Metatranscriptome145N
F054102Metagenome140Y
F064793Metagenome / Metatranscriptome128N
F065856Metagenome127N
F070221Metagenome123N
F076500Metagenome / Metatranscriptome118Y
F080484Metagenome115N
F081452Metagenome / Metatranscriptome114N
F084705Metagenome112Y
F084713Metagenome112Y
F086145Metagenome / Metatranscriptome111N
F087030Metagenome / Metatranscriptome110N
F092217Metagenome107Y
F092225Metagenome107N
F098016Metagenome / Metatranscriptome104N
F099440Metagenome / Metatranscriptome103N
F105497Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0211645_1004208All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus koreensis2567Open in IMG/M
Ga0211645_1004733All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae2411Open in IMG/M
Ga0211645_1005279Not Available2287Open in IMG/M
Ga0211645_1005330All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2276Open in IMG/M
Ga0211645_1007817Not Available1852Open in IMG/M
Ga0211645_1008296All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1796Open in IMG/M
Ga0211645_1010989All Organisms → Viruses → Predicted Viral1549Open in IMG/M
Ga0211645_1011308Not Available1526Open in IMG/M
Ga0211645_1016987Not Available1237Open in IMG/M
Ga0211645_1017104Not Available1232Open in IMG/M
Ga0211645_1018541All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1182Open in IMG/M
Ga0211645_1018653Not Available1179Open in IMG/M
Ga0211645_1020469All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → Nitrospinia → Nitrospinales → Nitrospinaceae → Nitrospina1123Open in IMG/M
Ga0211645_1021125All Organisms → cellular organisms → Bacteria1106Open in IMG/M
Ga0211645_1022180Not Available1078Open in IMG/M
Ga0211645_1025937All Organisms → cellular organisms → Bacteria993Open in IMG/M
Ga0211645_1026210Not Available988Open in IMG/M
Ga0211645_1030177Not Available918Open in IMG/M
Ga0211645_1032170Not Available887Open in IMG/M
Ga0211645_1033921Not Available862Open in IMG/M
Ga0211645_1041523Not Available775Open in IMG/M
Ga0211645_1044177All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes750Open in IMG/M
Ga0211645_1046645All Organisms → Viruses → environmental samples → uncultured Mediterranean phage729Open in IMG/M
Ga0211645_1050026Not Available703Open in IMG/M
Ga0211645_1050027Not Available703Open in IMG/M
Ga0211645_1050174Not Available702Open in IMG/M
Ga0211645_1051444Not Available693Open in IMG/M
Ga0211645_1056003Not Available663Open in IMG/M
Ga0211645_1056752Not Available658Open in IMG/M
Ga0211645_1056779Not Available658Open in IMG/M
Ga0211645_1057449Not Available654Open in IMG/M
Ga0211645_1057816Not Available652Open in IMG/M
Ga0211645_1061714Not Available629Open in IMG/M
Ga0211645_1065958Not Available607Open in IMG/M
Ga0211645_1072940Not Available575Open in IMG/M
Ga0211645_1076929Not Available558Open in IMG/M
Ga0211645_1077777Not Available555Open in IMG/M
Ga0211645_1080533All Organisms → cellular organisms → Bacteria544Open in IMG/M
Ga0211645_1082420Not Available537Open in IMG/M
Ga0211645_1083759Not Available532Open in IMG/M
Ga0211645_1087554Not Available519Open in IMG/M
Ga0211645_1087565All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium MED-G40519Open in IMG/M
Ga0211645_1089034Not Available514Open in IMG/M
Ga0211645_1090383Not Available509Open in IMG/M
Ga0211645_1092065Not Available504Open in IMG/M
Ga0211645_1093116Not Available501Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0211645_1004208Ga0211645_10042081F012354LPVCVIASSMIYPSAKTPKPIPIAKKAIVSRNSVGLPVFLNPIYEITPIITPTEKPIKFRIISNKNSNVANLLAVLNKV
Ga0211645_1004733Ga0211645_10047331F076500MTISKDDLLKRKEEIVTDYNKLVEEIGKGEQNLKVMR
Ga0211645_1005279Ga0211645_10052792F084705LVKHGFMLSPQALFALTYVSAVPLIAFSIETDMNNNPRAKKWYGVFGVIFFVIAVVAYIFFLIELLSY
Ga0211645_1005330Ga0211645_10053301F013235NNKQGWTSKLETPRGVNTPYIGSYMNSKLGDVKVSNKSLETFYGDKIKP
Ga0211645_1007817Ga0211645_10078173F001620MDAATLVTIITMFIVTDTSSEFVKYDGLMDCLKDKRKIEKMKDGRRVICGPSMAEIDAEGNIISIKNKMPDQSGSLKLGGTAKSLIEKKKEKKTKVLTQ
Ga0211645_1008296Ga0211645_10082962F035075LICIDDNAISVKYVNKKNQRRLWDTLKNIEAVEKWAQKKEELERKIKKNNPIDGRYK
Ga0211645_1010989Ga0211645_10109893F006126MSDLSFNKFTKGLNERRYIGPEGTAEFKKLSPKMRAAVNDVYSRINKAPDPIVSKIEGIIRVVAKKHGVSTYDIEDYFDNELIK
Ga0211645_1011308Ga0211645_10113082F092225MRKIAILSLLVFLNACGMTAPGFLATGTGAYSEYKVTSLIKTGTDLALSAADLPTTNDMVLSRITGYECKVSRALKEGIEYICKDVKVILPPTYTTIDNDEKK
Ga0211645_1016987Ga0211645_10169872F099440MQLIILENQVLNGVKLIDENGRKIMVCGLHNTGQEKYIENFSQWTCNLLASCIV
Ga0211645_1017104Ga0211645_10171041F026715NAVQLDGKTLRSRVNADAGYSFDVSTPFTSSHYTAGQKDVNLSPETTIEMQERNRNSFYSLNSYQVRGVSVSNGYAYGGPRVKNLSTYAFSAFAANNAITLEGGTGEGEILLENESGVLQHPQSDSWSTTVADWNTLRFTGSLNTNVDGETMRLSDINGTNSSQNHKINWAFPTEVTKSA
Ga0211645_1018541Ga0211645_10185412F001081MKELKIPKKHTKICDNCRGNGFIKVVNNNRQTNVHQCWVCKSEGEIKNYDQAEVDDFIYDFYYRERLH
Ga0211645_1018653Ga0211645_10186531F092217VEILAYAIVTFALIGLLSNFFFIFFEEANNELNEEYKDD
Ga0211645_1018653Ga0211645_10186532F016978MIKPGIEPFAKFKVGDKIRGRDALGIVDGQPGIVREVHASYPTADDYDDLTNPGIVYAVQFMKGNFLLKDYQMDLLGKQQLFNFMYDFSHIAEMENGNSEPLEXTTDIMQ
Ga0211645_1020469Ga0211645_10204692F086145MRRIVCKGYAGCWGGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKISIIVRV
Ga0211645_1021125Ga0211645_10211252F049047MPDYPSLNEEQSKEVMLDTNDFIKEQLSSTPFHVNLVLTFVGFIFLCLILAIKPVQIFKKEKHSDGSIILSVIALNKYLSSFARVYRSLTALAFYEHPKVIKIIDSQHGVSRKSN
Ga0211645_1022180Ga0211645_10221802F049927KIVKIAVPTTYKAVGNVAKDFIDAICDPIIPLKKTVIVAAVNPKT
Ga0211645_1025937Ga0211645_10259372F064793MTKKNKLKNGSTNSKELVEVLSMIDKSRKKLSANLKSSPAVVLDLICAANKLDKFIKTSKNIK
Ga0211645_1026210Ga0211645_10262102F015788MKMKRKCPNCQMNTCKQIAEGISHHQWYGYYECEQCKRIRTYKINRPATIETEYSWGATESTPIGINAKDWPTHD
Ga0211645_1030177Ga0211645_10301772F065856MMNRDKKGQNNQEIGKTEQSSQGDQFRQPSIYSRHDDVCFLDQADHQNSDN
Ga0211645_1032170Ga0211645_10321702F087030MKIMLIVYICASIGGTCDTWVKETHFDDWDSCMRAGYTTSLDLIKEAGPEYVNKSRMYVKFICKTVPVEEKKT
Ga0211645_1033921Ga0211645_10339211F070221ISLLLFIGLAFWGCEDSENNATNETGDFYISNEFLRCGQTYQVTISLPSNDTIGIVYNIEWNNLIKKLPRPVSYNDELIRVDTIFTEYDQCGNAIFTDYKMLSDYPDSTGIPDHPVDSVRNTYTDYWKLIQSISYYKYWDNSISNFTWDGLTRIKVDDPNSYTIHNEYGISLGNSFMQVETMDDGKRIKSKNMLDGSISWTYEWDGYSYEMWMNSSTNQSGYQTGTIDEYANEIEYILYDCSVDPCVPTQKTIFEFDCTMFEPIPM
Ga0211645_1041523Ga0211645_10415232F010876SSPLYRFILQEGKFKGVEFYFKNVELDHKPAPGAFDIAFEYEIIGGNYRDHGYPADKEYMNRAITEKNRDQFQVEIGKILKNLLILNDPRVILHKGRDL
Ga0211645_1044177Ga0211645_10441771F029782RLKEKPESEWKFHELSLDKFPGGFERELDWAGRYKKRNSDPKQKHEYKIEVINE
Ga0211645_1046645Ga0211645_10466452F022427GGTYDIDQTSTGTINLDVDGASANVSIEQTSSGTVSIDAAGASFTADIDQDNASTLELHHDGASADYVILQTGGSGDIIDLEVNGASANVDIIQRD
Ga0211645_1050026Ga0211645_10500261F042933MKKGDKNMAVEKDINGLDFIYENKDELVFEPDPNQLEPIEDEIED
Ga0211645_1050027Ga0211645_10500271F000711METINEPDHPTDYRIVKLMDGSLLMGTISVDDNHMRIENPLELTTIPRMTEFGLKEDTTLAQWIPFTKDKEFVITKDKVVVISLATVELAHFYEVVLNKMQNEVRRPRPALTPDDIDRILDIAEEMDNTEFMRDDEPHDMIGGYKIDSKKLH
Ga0211645_1050174Ga0211645_10501742F013358MSIRPKTVCDSCSATYILVHELPEDVYTEQYCPFCGEEHEDIEEDVLLNEDWD
Ga0211645_1051444Ga0211645_10514442F081452MIPVLSLAQFAREDAVIFDASRIFKDPTNFNIIISDKAA
Ga0211645_1056003Ga0211645_10560033F033592DGDKKLSLTGKGKYGLRPGQLKFGNDKQFKLTTDSNVKSYLLVTEFRRN
Ga0211645_1056752Ga0211645_10567523F029783MFVLVTEFLGRGLMIGELSGDTADFLNEIPWFDGIIYIIMLMGLYVFYKWVNKKFR
Ga0211645_1056779Ga0211645_10567791F054102SVYDTSATTRYTYDYKAALAATTKFEFLNSDNSILLVLEESDKLQVTCETTGGLNLIVSALEISR
Ga0211645_1057449Ga0211645_10574491F031152MTNQQKINKFAKRGYNDIPERKAVERLLTNDPNFKSWLQDYFQIDGPFQLVQDPLGEYKVDMGAVDRDGKILGLIEVDVFFSWKNEWPSHYKWCHRLGRKRKYWINTSYPYINITFSVNHKDAIVTTREIESQYPIKNKYFKYKQMTEQIVE
Ga0211645_1057816Ga0211645_10578163F013190LSQLYFSNAELGQEISINATWEGSIPLNEMPSTVASKVASSTKVDIAEIIAFHSSEVFVLAENSNLIKWL
Ga0211645_1061714Ga0211645_10617141F098016LSQRPLSPSDLPDETSADERLAQVSDDLPEPRLVLPLDDEEPDTPVLEDNAPVSLNGLSQHPADLGQHAAPSIELLLTRPDPAAAGSTVAQPILPGSQPVSPVPGWMSVADLHEPEDQLFLPEIPIGLPAELAEPVAAVFTNGASDAPLAE
Ga0211645_1065958Ga0211645_10659581F105497SKGRDKPVTKLFPKLSVRDKEMEKLVVGTPAQKAFRAGETEHKIEGIEILIRRLKHDKKILERQAKNKAMGDSGLDFLMKDLEKSFSDVYGPHLKKYTDIDKDILQMENIKKNVIMKDRKLNATGGRIGYSGGGKAGLPAITRGLPQGPGMQGTPVPAGPQPAGTSGGDLLVQNQMQQNPWMGAQKPPMGQPPMGQPPMGQ
Ga0211645_1072940Ga0211645_10729401F007755LQAARKNIMKHTFKIIYETDGMPICPDAIHKQLDLAMDDIKKQFSIQYYTLPGLHKLYLEPCGDWFPEEQKPIRFELQAPSGRVGPRAPSRKLDR
Ga0211645_1076929Ga0211645_10769291F084713MPKLIIEKIQDKKVYGKDMYKVVKLIDSHRLSLLNTQFDEPSMLRYIQSLPNTYNYEIKNKTGV
Ga0211645_1077777Ga0211645_10777771F019844VLHILKDFINRLFGFKDKKINKPKLTLVVNKTDNQEGKSENAIFSIIEEQFTFEEDISEEYRNELKIHLIESIENKVHPWDFEKNLDFKLKEPDKIYYLFMYYLMYIDIFEQDLFNKYTKLWYENNLDDTTKSDDEINNEALRLL
Ga0211645_1080533Ga0211645_10805332F002232MSKAVKKLRKLKEQLDKLEDKEADLLSDIDIAIDELE
Ga0211645_1082420Ga0211645_10824202F012162MLLTEEQTKYYLNDMIKHYREKEDNTVGSFSWQRSEAEYRRKTFEDMRIVLFGDDDNGNQRTINT
Ga0211645_1083759Ga0211645_10837592F045576TFKDGTSKEGGAYLNNVLSGTIDFPNQDGGFKDFIERLEDNEWTQYIREFIDNFEGPGKSIDYEEDEFENWEHIDTFDCEYDAKQYPAEIYFYFGDKEVLFQGSGYFYVNKNIKYTKENIIDLVTSLTES
Ga0211645_1084534Ga0211645_10845342F020787MPKVRFEIYSTERGKKLIDLGELLVESGYLQSFDLDEEGTEVVFNFEVNAGFDVEKSEINMEELRSYFDAADDVGKKFTDE
Ga0211645_1087554Ga0211645_10875541F050430MDKLKENIIDAIKIAGMLFFLIILIGTLVWPGGVETLINLFQ
Ga0211645_1087565Ga0211645_10875651F042560KLKKKGKFPIVSMVTKNNIKEFIKTVVMWLVFRISSWQ
Ga0211645_1089034Ga0211645_10890341F023453MKINDIISDGNSLTELEQWGRKQTPLFEGVASAEKLSKSLLQKAVDKFKRQPEPSEEKSKEMQDYMDKLELKLGTEKVEKTTLQKFFGFFRKHPKMIGLGVMILILLSPLLPSIAVIGLSLEKILSMILAGLYAMDIASPAVKTAMEL
Ga0211645_1090383Ga0211645_10903833F037425WDDFRNQYNGIIKNLLNNIDICNRRYAEEGEGGYLIQRKVYIKEIEEIKTFVKKKEIELGYYSNE
Ga0211645_1092065Ga0211645_10920652F010250MWLLTKMVIFLTMYFVGLLIMLNYPQDHELGIILSFGGLLLFGLTIAQAHIKSLE
Ga0211645_1093116Ga0211645_10931161F080484NANNILDSFAGIFIALHLFDVYTQTKKYNRNLSMSIFGQKTPPPTLGTIFPLKTNYKHYFNFFGFPNHRTGIGMFGYSITKRTKKNNEYYMGIGTIIINLSITAGWKYYFKKSNADDYYLAMSLVGSTLEIDDRYDETKKVSKDFIAGNFSAGYEKRLSKNIYLNM

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